Wall clock time and date at job start Wed Apr 1 2020 05:18:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86797 * 120.00186 * 2 1
4 4 H 1.48500 * 109.46945 * 274.98107 * 3 2 1
5 5 H 1.48501 * 109.47227 * 34.97866 * 3 2 1
6 6 H 1.48497 * 109.47123 * 154.98356 * 3 2 1
7 7 C 1.38809 * 119.99733 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00127 * 186.06219 * 7 2 1
9 9 N 1.36944 * 120.00112 * 6.05575 * 7 2 1
10 10 C 1.50234 * 130.83912 * 352.04520 * 9 7 2
11 11 H 1.09003 * 116.45970 * 359.97234 * 10 9 7
12 12 C 1.55844 * 101.04918 * 233.93902 * 10 9 7
13 13 C 1.54849 * 103.44787 * 327.06265 * 12 10 9
14 14 C 1.50238 * 130.83604 * 172.00750 * 9 7 2
15 15 H 1.08997 * 115.86209 * 0.38122 * 14 9 7
16 16 C 1.56224 * 101.03516 * 234.07772 * 14 9 7
17 17 H 1.08997 * 110.74037 * 85.39923 * 16 14 9
18 18 N 1.46502 * 110.67996 * 208.53237 * 16 14 9
19 19 C 1.34770 * 120.00393 * 270.25227 * 18 16 14
20 20 O 1.21286 * 119.99805 * 359.97438 * 19 18 16
21 21 C 1.50699 * 120.00223 * 179.97438 * 19 18 16
22 22 C 1.50703 * 109.46968 * 179.97438 * 21 19 18
23 23 C 1.33640 * 122.74858 * 84.71106 * 22 21 19
24 24 S 1.76193 * 107.92545 * 179.97438 * 23 22 21
25 25 C 1.70974 * 90.28118 * 0.27100 * 24 23 22
26 26 C 1.50707 * 124.91340 * 179.83590 * 25 24 23
27 27 C 1.52996 * 117.49912 * 8.75773 * 26 25 24
28 28 C 1.52991 * 117.50324 * 300.09091 * 26 25 24
29 29 N 1.29024 * 110.16819 * 359.84433 * 25 24 23
30 30 C 1.54851 * 103.27023 * 326.95168 * 16 14 9
31 31 H 0.97004 * 120.00155 * 0.02562 * 1 2 3
32 32 H 1.09006 * 110.62397 * 85.55275 * 12 10 9
33 33 H 1.09000 * 110.62797 * 208.56619 * 12 10 9
34 34 H 1.09004 * 110.62718 * 118.48779 * 13 12 10
35 35 H 1.08999 * 110.62878 * 241.35034 * 13 12 10
36 36 H 0.97002 * 119.99771 * 90.24539 * 18 16 14
37 37 H 1.08991 * 109.47232 * 299.99441 * 21 19 18
38 38 H 1.09008 * 109.46875 * 59.99867 * 21 19 18
39 39 H 1.08008 * 126.03468 * 0.03461 * 23 22 21
40 40 H 1.09005 * 115.54706 * 154.42093 * 26 25 24
41 41 H 1.08999 * 117.50109 * 359.97438 * 27 26 25
42 42 H 1.08996 * 117.50002 * 145.02297 * 27 26 25
43 43 H 1.08996 * 117.50332 * 214.97812 * 28 26 25
44 44 H 1.09008 * 117.50010 * 0.02562 * 28 26 25
45 45 H 1.09005 * 110.62584 * 241.54992 * 30 16 14
46 46 H 1.08994 * 110.62815 * 118.68762 * 30 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.3924 2.1071 -1.3948
5 1 1.5043 2.6200 0.8026
6 1 3.5964 1.4120 0.5920
7 6 2.0102 -1.2021 -0.0005
8 1 3.0856 -1.2049 0.0982
9 7 1.3311 -2.3847 -0.1262
10 6 -0.1425 -2.6770 -0.1190
11 1 -0.8067 -1.8218 0.0061
12 6 -0.2263 -3.7624 0.9962
13 6 1.1177 -4.5199 0.8632
14 6 1.8306 -3.7891 -0.3143
15 1 2.9134 -3.9073 -0.3547
16 6 1.0452 -4.2167 -1.5954
17 1 1.5734 -3.9014 -2.4952
18 7 0.8226 -5.6646 -1.6066
19 6 1.7310 -6.4818 -2.1752
20 8 2.7327 -6.0184 -2.6781
21 6 1.5023 -7.9713 -2.1862
22 6 2.6562 -8.6516 -2.8766
23 6 3.7881 -8.9751 -2.2441
24 16 4.8601 -9.7458 -3.4108
25 6 3.6828 -9.5493 -4.6350
26 6 3.8463 -9.9883 -6.0674
27 6 5.0707 -10.8393 -6.4101
28 6 5.0008 -9.3795 -6.8655
29 7 2.6342 -8.9706 -4.1550
30 6 -0.2984 -3.4592 -1.4579
31 1 -0.4850 0.8401 -0.0004
32 1 -0.3095 -3.2977 1.9787
33 1 -1.0654 -4.4343 0.8158
34 1 1.7010 -4.4309 1.7797
35 1 0.9452 -5.5682 0.6195
36 1 0.0213 -6.0352 -1.2046
37 1 1.4262 -8.3347 -1.1615
38 1 0.5780 -8.1930 -2.7199
39 1 4.0067 -8.7965 -1.2016
40 1 2.9206 -10.1996 -6.6029
41 1 5.7582 -11.0813 -5.5996
42 1 4.9508 -11.6101 -7.1713
43 1 4.8351 -9.1907 -7.9261
44 1 5.6426 -8.6617 -6.3545
45 1 -1.1304 -4.1609 -1.3980
46 1 -0.4378 -2.7704 -2.2910
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001096111305.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:18:17
Heat of formation + Delta-G solvation = 84.581243 kcal
Electronic energy + Delta-G solvation = -27835.866192 eV
Core-core repulsion = 24047.606907 eV
Total energy + Delta-G solvation = -3788.259286 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 347.141 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-40.43625 -39.66890 -38.24578 -37.39669 -33.87398 -32.42582 -32.01085 -29.41501
-29.07108 -28.50474 -27.12130 -25.79313 -24.16595 -22.85131 -22.02106 -21.26994
-20.61502 -19.78003 -19.48123 -18.55398 -17.83020 -17.20371 -16.73415 -16.42305
-15.56769 -15.18033 -14.95677 -14.82771 -14.44620 -14.25869 -14.14012 -13.89107
-13.53129 -13.20033 -12.65145 -12.43532 -12.31616 -12.04260 -11.99195 -11.74850
-11.52071 -11.38501 -11.15537 -11.05762 -10.94647 -10.92638 -10.87319 -10.82611
-10.22334 -10.07737 -9.88050 -9.78365 -9.67003 -9.45432 -9.33186 -9.29294
-8.87330 -8.75551 -8.47495 -6.89736 -5.74481 -3.11211 0.56093 1.19909
1.58071 2.53799 2.90074 3.35361 3.40187 3.45784 3.46917 3.62422
3.74136 4.37377 4.46021 4.52340 4.55143 4.82267 4.96928 5.08730
5.15550 5.20114 5.21951 5.28443 5.38018 5.42910 5.56526 5.59493
5.63414 5.68852 5.81072 5.84588 5.95533 6.00223 6.07748 6.12873
6.31556 6.33671 6.54131 6.60410 6.71338 6.82248 6.96466 6.99973
7.27966 7.54846 7.63955 7.74828 7.86980 8.15294 8.54118 9.10010
9.72674 10.54350 11.35996
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.018435 B = 0.002290 C = 0.002178
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1518.504031 B =12225.074024 C =12850.361993
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.921 5.921
2 C -0.010 4.010
3 Si 0.914 3.086
4 H -0.289 1.289
5 H -0.291 1.291
6 H -0.281 1.281
7 C -0.212 4.212
8 H 0.078 0.922
9 N -0.589 5.589
10 C 0.157 3.843
11 H 0.151 0.849
12 C -0.139 4.139
13 C -0.130 4.130
14 C 0.128 3.872
15 H 0.084 0.916
16 C 0.129 3.871
17 H 0.083 0.917
18 N -0.712 5.712
19 C 0.512 3.488
20 O -0.535 6.535
21 C -0.070 4.070
22 C 0.094 3.906
23 C -0.243 4.243
24 S 0.117 5.883
25 C 0.079 3.921
26 C -0.085 4.085
27 C -0.170 4.170
28 C -0.159 4.159
29 N -0.461 5.461
30 C -0.139 4.139
31 H 0.254 0.746
32 H 0.054 0.946
33 H 0.046 0.954
34 H 0.050 0.950
35 H 0.051 0.949
36 H 0.395 0.605
37 H 0.109 0.891
38 H 0.109 0.891
39 H 0.177 0.823
40 H 0.133 0.867
41 H 0.098 0.902
42 H 0.109 0.891
43 H 0.108 0.892
44 H 0.101 0.899
45 H 0.054 0.946
46 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.865 -23.843 -7.228 25.212
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.206 4.206
3 Si 0.745 3.255
4 H -0.216 1.216
5 H -0.218 1.218
6 H -0.207 1.207
7 C -0.340 4.340
8 H 0.096 0.904
9 N -0.310 5.310
10 C 0.050 3.950
11 H 0.167 0.833
12 C -0.178 4.178
13 C -0.170 4.170
14 C 0.019 3.981
15 H 0.102 0.898
16 C 0.023 3.977
17 H 0.101 0.899
18 N -0.363 5.363
19 C 0.297 3.703
20 O -0.411 6.411
21 C -0.113 4.113
22 C -0.038 4.038
23 C -0.382 4.382
24 S 0.372 5.628
25 C -0.199 4.199
26 C -0.106 4.106
27 C -0.208 4.208
28 C -0.198 4.198
29 N -0.175 5.175
30 C -0.179 4.179
31 H 0.064 0.936
32 H 0.073 0.927
33 H 0.064 0.936
34 H 0.069 0.931
35 H 0.069 0.931
36 H 0.229 0.771
37 H 0.127 0.873
38 H 0.128 0.872
39 H 0.194 0.806
40 H 0.150 0.850
41 H 0.116 0.884
42 H 0.127 0.873
43 H 0.126 0.874
44 H 0.119 0.881
45 H 0.073 0.927
46 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 5.184 -23.460 -7.844 25.274
hybrid contribution -0.672 1.104 0.703 1.471
sum 4.512 -22.357 -7.141 23.899
Atomic orbital electron populations
1.69506 1.05031 1.25033 1.57294 1.24743 0.95649 0.97512 1.02668
0.86047 0.78632 0.83306 0.77517 1.21633 1.21774 1.20685 1.19048
0.90914 0.81966 1.42045 0.90375 1.46448 1.01615 1.00337 1.82592
1.23645 0.87798 0.94817 0.88752 0.83254 1.23079 0.95179 0.98380
1.01211 1.22913 0.97650 0.97437 0.98976 1.23259 0.96078 0.86385
0.92348 0.89831 1.22675 0.98026 0.76781 1.00240 0.89918 1.46198
1.23505 1.07925 1.58674 1.20252 0.83683 0.87999 0.78365 1.90722
1.27959 1.77260 1.45204 1.20228 0.96968 0.92380 1.01701 1.19424
0.95887 1.00016 0.88424 1.26752 0.97162 1.09117 1.05165 1.83719
1.21589 1.55769 1.01711 1.25973 0.92816 1.01599 0.99472 1.20393
0.95761 1.05525 0.88960 1.23153 0.98959 0.94791 1.03885 1.23167
0.99703 0.96120 1.00829 1.65875 1.26448 1.12914 1.12229 1.23271
0.93994 0.98439 1.02231 0.93574 0.92718 0.93578 0.93141 0.93075
0.77053 0.87279 0.87247 0.80569 0.84968 0.88354 0.87280 0.87402
0.88103 0.92750 0.91642
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -26.19 10.53 55.49 0.58 -25.61 16
2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16
3 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16
4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
7 C -0.21 -5.88 10.57 -15.06 -0.16 -6.04 16
8 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16
9 N -0.59 -14.74 2.98 -145.59 -0.43 -15.17 16
10 C 0.16 3.51 4.68 -62.80 -0.29 3.22 16
11 H 0.15 3.83 5.63 -51.93 -0.29 3.54 16
12 C -0.14 -2.62 6.44 -24.24 -0.16 -2.78 16
13 C -0.13 -2.34 6.32 -24.24 -0.15 -2.50 16
14 C 0.13 2.70 5.36 -62.59 -0.34 2.36 16
15 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16
16 C 0.13 2.44 3.16 -65.22 -0.21 2.24 16
17 H 0.08 1.81 7.60 -51.93 -0.39 1.42 16
18 N -0.71 -10.45 3.72 -51.20 -0.19 -10.64 16
19 C 0.51 7.90 7.82 -10.99 -0.09 7.82 16
20 O -0.54 -10.77 15.71 5.55 0.09 -10.68 16
21 C -0.07 -0.79 6.11 -29.03 -0.18 -0.97 16
22 C 0.09 1.25 5.23 -84.23 -0.44 0.81 16
23 C -0.24 -2.88 11.14 29.12 0.32 -2.55 16
24 S 0.12 1.20 21.94 -107.50 -2.36 -1.15 16
25 C 0.08 0.94 7.04 -13.45 -0.09 0.85 16
26 C -0.08 -0.75 6.33 -91.77 -0.58 -1.34 16
27 C -0.17 -1.07 10.02 -26.69 -0.27 -1.33 16
28 C -0.16 -1.19 10.24 -26.70 -0.27 -1.46 16
29 N -0.46 -6.51 10.53 -8.06 -0.08 -6.60 16
30 C -0.14 -2.68 6.19 -24.24 -0.15 -2.83 16
31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16
32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16
33 H 0.05 0.73 7.82 -51.93 -0.41 0.32 16
34 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16
35 H 0.05 0.76 6.43 -51.93 -0.33 0.43 16
36 H 0.40 4.59 7.94 -40.82 -0.32 4.26 16
37 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16
38 H 0.11 1.08 8.14 -51.92 -0.42 0.66 16
39 H 0.18 1.74 8.06 -52.48 -0.42 1.32 16
40 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16
41 H 0.10 0.60 7.23 -51.93 -0.38 0.23 16
42 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16
43 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16
44 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16
45 H 0.05 0.87 7.38 -51.93 -0.38 0.48 16
46 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16
LS Contribution 384.07 15.07 5.79 5.79
Total: -1.00 -33.51 384.07 -11.48 -45.00
By element:
Atomic # 1 Polarization: 13.52 SS G_CDS: -6.71 Total: 6.81 kcal
Atomic # 6 Polarization: -1.75 SS G_CDS: -3.15 Total: -4.89 kcal
Atomic # 7 Polarization: -57.89 SS G_CDS: -0.13 Total: -58.01 kcal
Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal
Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal
Atomic # 16 Polarization: 1.20 SS G_CDS: -2.36 Total: -1.15 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -33.51 -11.48 -45.00 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001096111305.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.578 kcal
(2) G-P(sol) polarization free energy of solvation -33.512 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.066 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.485 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.997 kcal
(6) G-S(sol) free energy of system = (1) + (5) 84.581 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds