Wall clock time and date at job start Wed Apr 1 2020 05:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00186 * 2 1 4 4 H 1.48500 * 109.46945 * 274.98107 * 3 2 1 5 5 H 1.48501 * 109.47227 * 34.97866 * 3 2 1 6 6 H 1.48497 * 109.47123 * 154.98356 * 3 2 1 7 7 C 1.38809 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00127 * 186.06219 * 7 2 1 9 9 N 1.36944 * 120.00112 * 6.05575 * 7 2 1 10 10 C 1.50234 * 130.83912 * 352.04520 * 9 7 2 11 11 H 1.09003 * 116.45970 * 359.97234 * 10 9 7 12 12 C 1.55844 * 101.04918 * 233.93902 * 10 9 7 13 13 C 1.54849 * 103.44787 * 327.06265 * 12 10 9 14 14 C 1.50238 * 130.83604 * 172.00750 * 9 7 2 15 15 H 1.08997 * 115.86209 * 0.38122 * 14 9 7 16 16 C 1.56224 * 101.03516 * 234.07772 * 14 9 7 17 17 H 1.08997 * 110.74037 * 85.39923 * 16 14 9 18 18 N 1.46502 * 110.67996 * 208.53237 * 16 14 9 19 19 C 1.34770 * 120.00393 * 270.25227 * 18 16 14 20 20 O 1.21286 * 119.99805 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00223 * 179.97438 * 19 18 16 22 22 C 1.50703 * 109.46968 * 179.97438 * 21 19 18 23 23 C 1.33640 * 122.74858 * 84.71106 * 22 21 19 24 24 S 1.76193 * 107.92545 * 179.97438 * 23 22 21 25 25 C 1.70974 * 90.28118 * 0.27100 * 24 23 22 26 26 C 1.50707 * 124.91340 * 179.83590 * 25 24 23 27 27 C 1.52996 * 117.49912 * 8.75773 * 26 25 24 28 28 C 1.52991 * 117.50324 * 300.09091 * 26 25 24 29 29 N 1.29024 * 110.16819 * 359.84433 * 25 24 23 30 30 C 1.54851 * 103.27023 * 326.95168 * 16 14 9 31 31 H 0.97004 * 120.00155 * 0.02562 * 1 2 3 32 32 H 1.09006 * 110.62397 * 85.55275 * 12 10 9 33 33 H 1.09000 * 110.62797 * 208.56619 * 12 10 9 34 34 H 1.09004 * 110.62718 * 118.48779 * 13 12 10 35 35 H 1.08999 * 110.62878 * 241.35034 * 13 12 10 36 36 H 0.97002 * 119.99771 * 90.24539 * 18 16 14 37 37 H 1.08991 * 109.47232 * 299.99441 * 21 19 18 38 38 H 1.09008 * 109.46875 * 59.99867 * 21 19 18 39 39 H 1.08008 * 126.03468 * 0.03461 * 23 22 21 40 40 H 1.09005 * 115.54706 * 154.42093 * 26 25 24 41 41 H 1.08999 * 117.50109 * 359.97438 * 27 26 25 42 42 H 1.08996 * 117.50002 * 145.02297 * 27 26 25 43 43 H 1.08996 * 117.50332 * 214.97812 * 28 26 25 44 44 H 1.09008 * 117.50010 * 0.02562 * 28 26 25 45 45 H 1.09005 * 110.62584 * 241.54992 * 30 16 14 46 46 H 1.08994 * 110.62815 * 118.68762 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5043 2.6200 0.8026 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0856 -1.2049 0.0982 9 7 1.3311 -2.3847 -0.1262 10 6 -0.1425 -2.6770 -0.1190 11 1 -0.8067 -1.8218 0.0061 12 6 -0.2263 -3.7624 0.9962 13 6 1.1177 -4.5199 0.8632 14 6 1.8306 -3.7891 -0.3143 15 1 2.9134 -3.9073 -0.3547 16 6 1.0452 -4.2167 -1.5954 17 1 1.5734 -3.9014 -2.4952 18 7 0.8226 -5.6646 -1.6066 19 6 1.7310 -6.4818 -2.1752 20 8 2.7327 -6.0184 -2.6781 21 6 1.5023 -7.9713 -2.1862 22 6 2.6562 -8.6516 -2.8766 23 6 3.7881 -8.9751 -2.2441 24 16 4.8601 -9.7458 -3.4108 25 6 3.6828 -9.5493 -4.6350 26 6 3.8463 -9.9883 -6.0674 27 6 5.0707 -10.8393 -6.4101 28 6 5.0008 -9.3795 -6.8655 29 7 2.6342 -8.9706 -4.1550 30 6 -0.2984 -3.4592 -1.4579 31 1 -0.4850 0.8401 -0.0004 32 1 -0.3095 -3.2977 1.9787 33 1 -1.0654 -4.4343 0.8158 34 1 1.7010 -4.4309 1.7797 35 1 0.9452 -5.5682 0.6195 36 1 0.0213 -6.0352 -1.2046 37 1 1.4262 -8.3347 -1.1615 38 1 0.5780 -8.1930 -2.7199 39 1 4.0067 -8.7965 -1.2016 40 1 2.9206 -10.1996 -6.6029 41 1 5.7582 -11.0813 -5.5996 42 1 4.9508 -11.6101 -7.1713 43 1 4.8351 -9.1907 -7.9261 44 1 5.6426 -8.6617 -6.3545 45 1 -1.1304 -4.1609 -1.3980 46 1 -0.4378 -2.7704 -2.2910 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096111305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:17 Heat of formation + Delta-G solvation = 84.581243 kcal Electronic energy + Delta-G solvation = -27835.866192 eV Core-core repulsion = 24047.606907 eV Total energy + Delta-G solvation = -3788.259286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.43625 -39.66890 -38.24578 -37.39669 -33.87398 -32.42582 -32.01085 -29.41501 -29.07108 -28.50474 -27.12130 -25.79313 -24.16595 -22.85131 -22.02106 -21.26994 -20.61502 -19.78003 -19.48123 -18.55398 -17.83020 -17.20371 -16.73415 -16.42305 -15.56769 -15.18033 -14.95677 -14.82771 -14.44620 -14.25869 -14.14012 -13.89107 -13.53129 -13.20033 -12.65145 -12.43532 -12.31616 -12.04260 -11.99195 -11.74850 -11.52071 -11.38501 -11.15537 -11.05762 -10.94647 -10.92638 -10.87319 -10.82611 -10.22334 -10.07737 -9.88050 -9.78365 -9.67003 -9.45432 -9.33186 -9.29294 -8.87330 -8.75551 -8.47495 -6.89736 -5.74481 -3.11211 0.56093 1.19909 1.58071 2.53799 2.90074 3.35361 3.40187 3.45784 3.46917 3.62422 3.74136 4.37377 4.46021 4.52340 4.55143 4.82267 4.96928 5.08730 5.15550 5.20114 5.21951 5.28443 5.38018 5.42910 5.56526 5.59493 5.63414 5.68852 5.81072 5.84588 5.95533 6.00223 6.07748 6.12873 6.31556 6.33671 6.54131 6.60410 6.71338 6.82248 6.96466 6.99973 7.27966 7.54846 7.63955 7.74828 7.86980 8.15294 8.54118 9.10010 9.72674 10.54350 11.35996 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018435 B = 0.002290 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.504031 B =12225.074024 C =12850.361993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.212 4.212 8 H 0.078 0.922 9 N -0.589 5.589 10 C 0.157 3.843 11 H 0.151 0.849 12 C -0.139 4.139 13 C -0.130 4.130 14 C 0.128 3.872 15 H 0.084 0.916 16 C 0.129 3.871 17 H 0.083 0.917 18 N -0.712 5.712 19 C 0.512 3.488 20 O -0.535 6.535 21 C -0.070 4.070 22 C 0.094 3.906 23 C -0.243 4.243 24 S 0.117 5.883 25 C 0.079 3.921 26 C -0.085 4.085 27 C -0.170 4.170 28 C -0.159 4.159 29 N -0.461 5.461 30 C -0.139 4.139 31 H 0.254 0.746 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.395 0.605 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.177 0.823 40 H 0.133 0.867 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.054 0.946 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.865 -23.843 -7.228 25.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.340 4.340 8 H 0.096 0.904 9 N -0.310 5.310 10 C 0.050 3.950 11 H 0.167 0.833 12 C -0.178 4.178 13 C -0.170 4.170 14 C 0.019 3.981 15 H 0.102 0.898 16 C 0.023 3.977 17 H 0.101 0.899 18 N -0.363 5.363 19 C 0.297 3.703 20 O -0.411 6.411 21 C -0.113 4.113 22 C -0.038 4.038 23 C -0.382 4.382 24 S 0.372 5.628 25 C -0.199 4.199 26 C -0.106 4.106 27 C -0.208 4.208 28 C -0.198 4.198 29 N -0.175 5.175 30 C -0.179 4.179 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.229 0.771 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.194 0.806 40 H 0.150 0.850 41 H 0.116 0.884 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.119 0.881 45 H 0.073 0.927 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.184 -23.460 -7.844 25.274 hybrid contribution -0.672 1.104 0.703 1.471 sum 4.512 -22.357 -7.141 23.899 Atomic orbital electron populations 1.69506 1.05031 1.25033 1.57294 1.24743 0.95649 0.97512 1.02668 0.86047 0.78632 0.83306 0.77517 1.21633 1.21774 1.20685 1.19048 0.90914 0.81966 1.42045 0.90375 1.46448 1.01615 1.00337 1.82592 1.23645 0.87798 0.94817 0.88752 0.83254 1.23079 0.95179 0.98380 1.01211 1.22913 0.97650 0.97437 0.98976 1.23259 0.96078 0.86385 0.92348 0.89831 1.22675 0.98026 0.76781 1.00240 0.89918 1.46198 1.23505 1.07925 1.58674 1.20252 0.83683 0.87999 0.78365 1.90722 1.27959 1.77260 1.45204 1.20228 0.96968 0.92380 1.01701 1.19424 0.95887 1.00016 0.88424 1.26752 0.97162 1.09117 1.05165 1.83719 1.21589 1.55769 1.01711 1.25973 0.92816 1.01599 0.99472 1.20393 0.95761 1.05525 0.88960 1.23153 0.98959 0.94791 1.03885 1.23167 0.99703 0.96120 1.00829 1.65875 1.26448 1.12914 1.12229 1.23271 0.93994 0.98439 1.02231 0.93574 0.92718 0.93578 0.93141 0.93075 0.77053 0.87279 0.87247 0.80569 0.84968 0.88354 0.87280 0.87402 0.88103 0.92750 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.19 10.53 55.49 0.58 -25.61 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.21 -5.88 10.57 -15.06 -0.16 -6.04 16 8 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 9 N -0.59 -14.74 2.98 -145.59 -0.43 -15.17 16 10 C 0.16 3.51 4.68 -62.80 -0.29 3.22 16 11 H 0.15 3.83 5.63 -51.93 -0.29 3.54 16 12 C -0.14 -2.62 6.44 -24.24 -0.16 -2.78 16 13 C -0.13 -2.34 6.32 -24.24 -0.15 -2.50 16 14 C 0.13 2.70 5.36 -62.59 -0.34 2.36 16 15 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 16 C 0.13 2.44 3.16 -65.22 -0.21 2.24 16 17 H 0.08 1.81 7.60 -51.93 -0.39 1.42 16 18 N -0.71 -10.45 3.72 -51.20 -0.19 -10.64 16 19 C 0.51 7.90 7.82 -10.99 -0.09 7.82 16 20 O -0.54 -10.77 15.71 5.55 0.09 -10.68 16 21 C -0.07 -0.79 6.11 -29.03 -0.18 -0.97 16 22 C 0.09 1.25 5.23 -84.23 -0.44 0.81 16 23 C -0.24 -2.88 11.14 29.12 0.32 -2.55 16 24 S 0.12 1.20 21.94 -107.50 -2.36 -1.15 16 25 C 0.08 0.94 7.04 -13.45 -0.09 0.85 16 26 C -0.08 -0.75 6.33 -91.77 -0.58 -1.34 16 27 C -0.17 -1.07 10.02 -26.69 -0.27 -1.33 16 28 C -0.16 -1.19 10.24 -26.70 -0.27 -1.46 16 29 N -0.46 -6.51 10.53 -8.06 -0.08 -6.60 16 30 C -0.14 -2.68 6.19 -24.24 -0.15 -2.83 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.73 7.82 -51.93 -0.41 0.32 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.76 6.43 -51.93 -0.33 0.43 16 36 H 0.40 4.59 7.94 -40.82 -0.32 4.26 16 37 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.11 1.08 8.14 -51.92 -0.42 0.66 16 39 H 0.18 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.10 0.60 7.23 -51.93 -0.38 0.23 16 42 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 45 H 0.05 0.87 7.38 -51.93 -0.38 0.48 16 46 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -33.51 384.07 -11.48 -45.00 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.71 Total: 6.81 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -3.15 Total: -4.89 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.13 Total: -58.01 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.36 Total: -1.15 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.51 -11.48 -45.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096111305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.578 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds