Wall clock time and date at job start Wed Apr 1 2020 05:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00186 * 2 1 4 4 H 1.48500 * 109.46945 * 274.98107 * 3 2 1 5 5 H 1.48501 * 109.47227 * 34.97866 * 3 2 1 6 6 H 1.48497 * 109.47123 * 154.98356 * 3 2 1 7 7 C 1.38809 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00127 * 186.06219 * 7 2 1 9 9 N 1.36944 * 120.00112 * 6.05575 * 7 2 1 10 10 C 1.50234 * 130.83912 * 352.04520 * 9 7 2 11 11 H 1.09003 * 116.45970 * 359.97234 * 10 9 7 12 12 C 1.55844 * 101.04918 * 233.93902 * 10 9 7 13 13 C 1.54849 * 103.44787 * 327.06265 * 12 10 9 14 14 C 1.50238 * 130.83604 * 172.00750 * 9 7 2 15 15 H 1.08997 * 115.86209 * 0.38122 * 14 9 7 16 16 C 1.56224 * 101.03516 * 234.07772 * 14 9 7 17 17 H 1.08997 * 110.74037 * 85.39923 * 16 14 9 18 18 N 1.46502 * 110.67996 * 208.53237 * 16 14 9 19 19 C 1.34770 * 120.00393 * 270.25227 * 18 16 14 20 20 O 1.21286 * 119.99805 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00223 * 179.97438 * 19 18 16 22 22 C 1.50703 * 109.46968 * 179.97438 * 21 19 18 23 23 C 1.33640 * 122.74858 * 84.71106 * 22 21 19 24 24 S 1.76193 * 107.92545 * 179.97438 * 23 22 21 25 25 C 1.70974 * 90.28118 * 0.27100 * 24 23 22 26 26 C 1.50707 * 124.91340 * 179.83590 * 25 24 23 27 27 C 1.52996 * 117.49912 * 8.75773 * 26 25 24 28 28 C 1.52991 * 117.50324 * 300.09091 * 26 25 24 29 29 N 1.29024 * 110.16819 * 359.84433 * 25 24 23 30 30 C 1.54851 * 103.27023 * 326.95168 * 16 14 9 31 31 H 0.97004 * 120.00155 * 0.02562 * 1 2 3 32 32 H 1.09006 * 110.62397 * 85.55275 * 12 10 9 33 33 H 1.09000 * 110.62797 * 208.56619 * 12 10 9 34 34 H 1.09004 * 110.62718 * 118.48779 * 13 12 10 35 35 H 1.08999 * 110.62878 * 241.35034 * 13 12 10 36 36 H 0.97002 * 119.99771 * 90.24539 * 18 16 14 37 37 H 1.08991 * 109.47232 * 299.99441 * 21 19 18 38 38 H 1.09008 * 109.46875 * 59.99867 * 21 19 18 39 39 H 1.08008 * 126.03468 * 0.03461 * 23 22 21 40 40 H 1.09005 * 115.54706 * 154.42093 * 26 25 24 41 41 H 1.08999 * 117.50109 * 359.97438 * 27 26 25 42 42 H 1.08996 * 117.50002 * 145.02297 * 27 26 25 43 43 H 1.08996 * 117.50332 * 214.97812 * 28 26 25 44 44 H 1.09008 * 117.50010 * 0.02562 * 28 26 25 45 45 H 1.09005 * 110.62584 * 241.54992 * 30 16 14 46 46 H 1.08994 * 110.62815 * 118.68762 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5043 2.6200 0.8026 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0856 -1.2049 0.0982 9 7 1.3311 -2.3847 -0.1262 10 6 -0.1425 -2.6770 -0.1190 11 1 -0.8067 -1.8218 0.0061 12 6 -0.2263 -3.7624 0.9962 13 6 1.1177 -4.5199 0.8632 14 6 1.8306 -3.7891 -0.3143 15 1 2.9134 -3.9073 -0.3547 16 6 1.0452 -4.2167 -1.5954 17 1 1.5734 -3.9014 -2.4952 18 7 0.8226 -5.6646 -1.6066 19 6 1.7310 -6.4818 -2.1752 20 8 2.7327 -6.0184 -2.6781 21 6 1.5023 -7.9713 -2.1862 22 6 2.6562 -8.6516 -2.8766 23 6 3.7881 -8.9751 -2.2441 24 16 4.8601 -9.7458 -3.4108 25 6 3.6828 -9.5493 -4.6350 26 6 3.8463 -9.9883 -6.0674 27 6 5.0707 -10.8393 -6.4101 28 6 5.0008 -9.3795 -6.8655 29 7 2.6342 -8.9706 -4.1550 30 6 -0.2984 -3.4592 -1.4579 31 1 -0.4850 0.8401 -0.0004 32 1 -0.3095 -3.2977 1.9787 33 1 -1.0654 -4.4343 0.8158 34 1 1.7010 -4.4309 1.7797 35 1 0.9452 -5.5682 0.6195 36 1 0.0213 -6.0352 -1.2046 37 1 1.4262 -8.3347 -1.1615 38 1 0.5780 -8.1930 -2.7199 39 1 4.0067 -8.7965 -1.2016 40 1 2.9206 -10.1996 -6.6029 41 1 5.7582 -11.0813 -5.5996 42 1 4.9508 -11.6101 -7.1713 43 1 4.8351 -9.1907 -7.9261 44 1 5.6426 -8.6617 -6.3545 45 1 -1.1304 -4.1609 -1.3980 46 1 -0.4378 -2.7704 -2.2910 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096111305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:16 Heat of formation + Delta-G solvation = 63.887389 kcal Electronic energy + Delta-G solvation = -27836.763545 eV Core-core repulsion = 24047.606907 eV Total energy + Delta-G solvation = -3789.156638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60762 -40.90048 -39.57587 -38.07541 -35.43254 -34.24206 -33.01433 -31.00275 -30.79212 -29.76763 -28.48621 -26.64705 -26.05478 -23.38695 -23.16057 -22.53911 -21.79488 -21.23217 -20.64341 -20.12458 -18.99176 -18.61752 -18.10859 -17.17038 -16.87981 -16.78203 -16.47986 -15.95430 -15.78037 -15.44577 -15.33719 -15.05947 -14.60942 -14.18943 -14.07236 -13.93976 -13.49300 -13.32878 -13.23017 -13.03450 -12.88698 -12.81554 -12.61771 -12.56072 -12.36774 -12.21284 -12.00460 -11.91032 -11.81514 -11.58355 -11.51179 -11.18157 -11.04571 -10.85803 -10.75816 -10.64902 -10.30515 -9.96921 -9.59150 -8.85108 -7.83272 -5.20998 -0.28594 0.38992 0.73582 1.43512 1.45830 1.53545 1.60992 1.70641 2.33923 2.50519 2.79882 3.04276 3.31250 3.52105 3.69796 3.79492 3.89393 3.97142 4.01854 4.12829 4.13890 4.20827 4.25037 4.40500 4.43316 4.48555 4.52180 4.61319 4.69980 4.72674 4.76544 4.82603 4.91048 4.98045 5.02862 5.08654 5.14844 5.15411 5.16289 5.26625 5.34769 5.46334 5.56087 5.76820 5.89126 6.24981 6.67461 6.78308 7.03817 7.37094 7.67199 8.54644 9.24621 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018435 B = 0.002290 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.504031 B =12225.074024 C =12850.361993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.061 4.061 3 Si 0.973 3.027 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.227 4.227 8 H 0.069 0.931 9 N -0.619 5.619 10 C 0.140 3.860 11 H 0.116 0.884 12 C -0.127 4.127 13 C -0.114 4.114 14 C 0.118 3.882 15 H 0.063 0.937 16 C 0.148 3.852 17 H 0.044 0.956 18 N -0.696 5.696 19 C 0.513 3.487 20 O -0.587 6.587 21 C -0.059 4.059 22 C 0.070 3.930 23 C -0.258 4.258 24 S 0.150 5.850 25 C 0.065 3.935 26 C -0.108 4.108 27 C -0.147 4.147 28 C -0.163 4.163 29 N -0.497 5.497 30 C -0.125 4.125 31 H 0.249 0.751 32 H 0.036 0.964 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.093 0.907 36 H 0.417 0.583 37 H 0.150 0.850 38 H 0.128 0.872 39 H 0.193 0.807 40 H 0.135 0.865 41 H 0.100 0.900 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.489 -26.859 -7.080 27.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.255 4.255 3 Si 0.802 3.198 4 H -0.219 1.219 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.356 4.356 8 H 0.087 0.913 9 N -0.341 5.341 10 C 0.034 3.966 11 H 0.133 0.867 12 C -0.166 4.166 13 C -0.154 4.154 14 C 0.010 3.990 15 H 0.081 0.919 16 C 0.041 3.959 17 H 0.063 0.937 18 N -0.349 5.349 19 C 0.300 3.700 20 O -0.467 6.467 21 C -0.101 4.101 22 C -0.062 4.062 23 C -0.397 4.397 24 S 0.406 5.594 25 C -0.212 4.212 26 C -0.130 4.130 27 C -0.185 4.185 28 C -0.202 4.202 29 N -0.211 5.211 30 C -0.165 4.165 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.255 0.745 37 H 0.168 0.832 38 H 0.146 0.854 39 H 0.210 0.790 40 H 0.153 0.847 41 H 0.119 0.881 42 H 0.152 0.848 43 H 0.141 0.859 44 H 0.106 0.894 45 H 0.117 0.883 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.782 -26.541 -7.680 28.040 hybrid contribution -0.467 1.991 0.598 2.131 sum 4.315 -24.550 -7.082 25.912 Atomic orbital electron populations 1.69724 1.05874 1.25131 1.58269 1.25446 0.96569 1.00169 1.03272 0.85136 0.77780 0.79798 0.77098 1.21883 1.21642 1.19979 1.19271 0.90957 0.83755 1.41604 0.91298 1.46717 1.03144 1.00980 1.83259 1.23577 0.85919 0.95289 0.91789 0.86690 1.22971 0.97165 0.97778 0.98682 1.22815 0.96417 0.99089 0.97031 1.23399 0.95612 0.85183 0.94772 0.91854 1.22065 0.97015 0.79392 0.97461 0.93726 1.45903 1.24401 1.05815 1.58749 1.21010 0.82512 0.89707 0.76776 1.90711 1.30252 1.78477 1.47260 1.20281 0.97136 0.88468 1.04224 1.19764 0.97010 1.00803 0.88583 1.27097 0.97267 1.09054 1.06318 1.83506 1.20504 1.54822 1.00573 1.26514 0.92853 1.00921 1.00907 1.20565 0.96880 1.07656 0.87894 1.23273 0.96699 0.94515 1.03983 1.23242 0.98669 0.96953 1.01339 1.65921 1.27906 1.14332 1.12988 1.23107 0.95491 0.98447 0.99463 0.94106 0.94482 0.89132 0.93845 0.88909 0.74459 0.83249 0.85377 0.78998 0.84699 0.88148 0.84845 0.85878 0.89390 0.88339 0.94198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.22 10.53 21.65 0.23 -54.99 16 2 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 3 Si 0.97 46.82 29.56 68.60 2.03 48.85 16 4 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.23 -13.05 10.57 84.03 0.89 -12.16 16 8 H 0.07 3.94 7.84 -2.91 -0.02 3.92 16 9 N -0.62 -31.71 2.98 -614.55 -1.83 -33.55 16 10 C 0.14 6.28 4.68 46.23 0.22 6.50 16 11 H 0.12 6.05 5.63 -2.39 -0.01 6.04 16 12 C -0.13 -4.48 6.44 32.21 0.21 -4.27 16 13 C -0.11 -3.83 6.32 32.21 0.20 -3.63 16 14 C 0.12 4.98 5.36 46.37 0.25 5.23 16 15 H 0.06 2.87 8.14 -2.39 -0.02 2.86 16 16 C 0.15 5.54 3.16 46.74 0.15 5.69 16 17 H 0.04 2.02 7.60 -2.39 -0.02 2.01 16 18 N -0.70 -18.50 3.72 -434.28 -1.62 -20.11 16 19 C 0.51 14.84 7.82 87.66 0.69 15.53 16 20 O -0.59 -23.68 15.71 -3.05 -0.05 -23.72 16 21 C -0.06 -1.16 6.11 29.10 0.18 -0.98 16 22 C 0.07 1.75 5.23 41.52 0.22 1.97 16 23 C -0.26 -5.72 11.14 66.78 0.74 -4.98 16 24 S 0.15 2.91 21.94 -56.49 -1.24 1.68 16 25 C 0.07 1.50 7.04 88.52 0.62 2.12 16 26 C -0.11 -1.82 6.33 -11.54 -0.07 -1.89 16 27 C -0.15 -1.54 10.02 30.62 0.31 -1.23 16 28 C -0.16 -2.25 10.24 30.62 0.31 -1.94 16 29 N -0.50 -13.66 10.53 -179.40 -1.89 -15.55 16 30 C -0.13 -4.69 6.19 32.21 0.20 -4.49 16 31 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.09 2.41 7.82 -2.39 -0.02 2.39 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.09 2.33 6.43 -2.39 -0.02 2.32 16 36 H 0.42 7.58 7.94 -92.71 -0.74 6.85 16 37 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.13 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.19 3.39 8.06 -2.91 -0.02 3.37 16 40 H 0.14 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.10 1.01 7.23 -2.39 -0.02 1.00 16 42 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.10 2.77 7.38 -2.38 -0.02 2.76 16 46 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -78.17 384.07 1.47 -76.69 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.27 Total: 22.29 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 5.57 Total: -1.59 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -5.11 Total: -124.20 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.72 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.24 Total: 1.68 kcal Total: -78.17 1.47 -76.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096111305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.582 kcal (2) G-P(sol) polarization free energy of solvation -78.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds