Wall clock time and date at job start Wed Apr 1 2020 05:18:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86798 * 120.00168 * 2 1
4 4 H 1.48502 * 109.47104 * 269.99871 * 3 2 1
5 5 H 1.48499 * 109.47407 * 30.00250 * 3 2 1
6 6 H 1.48506 * 109.47352 * 150.00127 * 3 2 1
7 7 C 1.38819 * 119.99756 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99626 * 179.97438 * 7 2 1
9 9 N 1.36932 * 120.00179 * 359.97438 * 7 2 1
10 10 C 1.50243 * 130.83677 * 359.97438 * 9 7 2
11 11 H 1.08994 * 115.86010 * 0.37103 * 10 9 7
12 12 C 1.55851 * 101.75258 * 234.17597 * 10 9 7
13 13 C 1.56996 * 102.65177 * 327.22732 * 12 10 9
14 14 C 1.50664 * 130.81278 * 180.02562 * 9 7 2
15 15 H 1.08999 * 116.03147 * 359.55203 * 14 9 7
16 16 C 1.55842 * 100.85852 * 233.91858 * 14 9 7
17 17 H 1.09004 * 110.63084 * 208.48776 * 16 14 9
18 18 N 1.46503 * 110.62676 * 85.62675 * 16 14 9
19 19 C 1.34773 * 119.99984 * 157.20359 * 18 16 14
20 20 O 1.21275 * 120.00399 * 359.97438 * 19 18 16
21 21 C 1.50701 * 120.00051 * 179.97438 * 19 18 16
22 22 C 1.50697 * 109.47406 * 179.97438 * 21 19 18
23 23 C 1.33635 * 122.74873 * 85.02241 * 22 21 19
24 24 S 1.76199 * 107.92344 * 180.02562 * 23 22 21
25 25 C 1.70977 * 90.28221 * 359.97438 * 24 23 22
26 26 C 1.50699 * 124.91502 * 179.97438 * 25 24 23
27 27 C 1.53007 * 117.49979 * 8.64886 * 26 25 24
28 28 C 1.53002 * 60.00137 * 252.51014 * 27 26 25
29 29 N 1.29027 * 110.16578 * 0.02562 * 25 24 23
30 30 C 1.54848 * 103.58720 * 327.05778 * 16 14 9
31 31 H 0.97004 * 119.99768 * 359.97438 * 1 2 3
32 32 H 1.08998 * 110.62539 * 85.31824 * 12 10 9
33 33 H 1.09000 * 110.62487 * 208.33926 * 12 10 9
34 34 H 1.08999 * 110.29320 * 241.31960 * 13 12 10
35 35 H 1.08993 * 110.96875 * 118.45177 * 13 12 10
36 36 H 0.97005 * 119.99722 * 337.19695 * 18 16 14
37 37 H 1.09002 * 109.47287 * 59.99447 * 21 19 18
38 38 H 1.09009 * 109.46858 * 299.99938 * 21 19 18
39 39 H 1.08001 * 126.03996 * 0.03618 * 23 22 21
40 40 H 1.08997 * 115.55162 * 154.35494 * 26 25 24
41 41 H 1.08998 * 117.49555 * 0.02562 * 27 26 25
42 42 H 1.09000 * 117.49359 * 145.01616 * 27 26 25
43 43 H 1.09004 * 117.49574 * 252.51706 * 28 27 26
44 44 H 1.08993 * 117.52152 * 107.47982 * 28 27 26
45 45 H 1.09001 * 110.62894 * 118.56840 * 30 16 14
46 46 H 1.08998 * 110.62924 * 241.42883 * 30 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4978 2.0464 -1.4001
5 1 1.4478 2.6527 0.7001
6 1 3.5479 1.4401 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0903 -1.2022 -0.0010
9 7 1.3256 -2.3881 -0.0005
10 6 -0.1501 -2.6705 0.0005
11 1 -0.8014 -1.7966 -0.0050
12 6 -0.2930 -3.6079 1.2373
13 6 1.0690 -4.3887 1.2363
14 6 1.8207 -3.8110 -0.0005
15 1 2.9029 -3.9410 -0.0082
16 6 1.0659 -4.3846 -1.2375
17 1 0.8918 -5.4541 -1.1192
18 7 1.8147 -4.1182 -2.4682
19 6 1.6144 -4.8851 -3.5582
20 8 0.8146 -5.7959 -3.5202
21 6 2.3843 -4.6107 -4.8244
22 6 1.9784 -5.6025 -5.8839
23 6 0.9130 -5.4245 -6.6706
24 16 0.8032 -6.8080 -7.7561
25 6 2.2013 -7.4879 -7.0446
26 6 2.8244 -8.7991 -7.4492
27 6 2.2823 -9.4805 -8.7073
28 6 1.9634 -10.0580 -7.3268
29 7 2.6451 -6.7163 -6.1106
30 6 -0.2751 -3.6103 -1.2365
31 1 -0.4850 0.8401 0.0004
32 1 -0.4008 -3.0239 2.1513
33 1 -1.1383 -4.2844 1.1108
34 1 0.8922 -5.4572 1.1136
35 1 1.6297 -4.1961 2.1509
36 1 2.4547 -3.3898 -2.4985
37 1 3.4522 -4.7058 -4.6281
38 1 2.1670 -3.5999 -5.1699
39 1 0.2384 -4.5814 -6.6457
40 1 3.8903 -8.8964 -7.2434
41 1 1.4753 -8.9802 -9.2426
42 1 2.9918 -10.0261 -9.3294
43 1 2.4631 -10.9835 -7.0407
44 1 0.9465 -9.9379 -6.9532
45 1 -0.3831 -3.0280 -2.1516
46 1 -1.1142 -4.2957 -1.1177
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001097982054.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:18:21
Heat of formation + Delta-G solvation = 79.300566 kcal
Electronic energy + Delta-G solvation = -27834.848190 eV
Core-core repulsion = 24046.359917 eV
Total energy + Delta-G solvation = -3788.488273 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 347.141 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-40.32669 -39.47898 -38.21518 -37.37473 -33.71131 -32.54696 -31.99302 -29.08888
-29.06444 -28.42326 -27.18019 -25.73872 -24.18790 -22.83588 -22.14537 -21.19612
-20.09706 -19.82598 -19.50860 -18.66493 -17.76830 -17.00450 -16.76314 -16.37660
-15.80398 -15.14220 -14.86046 -14.61569 -14.42819 -14.21883 -13.93104 -13.75601
-13.51144 -13.08542 -12.77116 -12.58155 -12.23804 -12.00606 -11.98030 -11.81665
-11.38153 -11.16876 -11.12472 -11.11515 -10.94153 -10.92985 -10.91255 -10.50289
-10.39758 -10.11146 -9.90149 -9.73403 -9.68616 -9.41587 -9.25666 -9.17381
-8.97947 -8.68754 -8.42468 -6.96192 -5.75958 -3.15081 0.61594 1.24769
1.62999 2.60654 3.00993 3.34418 3.39932 3.40324 3.41970 3.70785
3.82638 4.38758 4.39447 4.54556 4.62010 4.89038 5.05870 5.12499
5.20557 5.22326 5.25376 5.35691 5.40953 5.46379 5.60858 5.63067
5.66432 5.69332 5.74236 5.87602 6.04475 6.05680 6.12444 6.16378
6.30296 6.42180 6.50012 6.59852 6.75004 6.82392 6.94999 7.14051
7.32567 7.45281 7.69577 7.77578 8.02365 8.15718 8.65768 9.05590
9.68634 10.50209 11.32862
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.017573 B = 0.002401 C = 0.002257
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1592.931485 B =11659.220424 C =12405.598228
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C -0.011 4.011
3 Si 0.915 3.085
4 H -0.290 1.290
5 H -0.291 1.291
6 H -0.282 1.282
7 C -0.213 4.213
8 H 0.078 0.922
9 N -0.590 5.590
10 C 0.154 3.846
11 H 0.152 0.848
12 C -0.139 4.139
13 C -0.127 4.127
14 C 0.124 3.876
15 H 0.088 0.912
16 C 0.131 3.869
17 H 0.077 0.923
18 N -0.705 5.705
19 C 0.515 3.485
20 O -0.546 6.546
21 C -0.071 4.071
22 C 0.097 3.903
23 C -0.243 4.243
24 S 0.114 5.886
25 C 0.078 3.922
26 C -0.084 4.084
27 C -0.170 4.170
28 C -0.160 4.160
29 N -0.460 5.460
30 C -0.142 4.142
31 H 0.254 0.746
32 H 0.055 0.945
33 H 0.050 0.950
34 H 0.050 0.950
35 H 0.057 0.943
36 H 0.403 0.597
37 H 0.109 0.891
38 H 0.110 0.890
39 H 0.177 0.823
40 H 0.132 0.868
41 H 0.098 0.902
42 H 0.109 0.891
43 H 0.107 0.893
44 H 0.100 0.900
45 H 0.058 0.942
46 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.304 -15.040 -14.935 21.452
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.207 4.207
3 Si 0.746 3.254
4 H -0.217 1.217
5 H -0.217 1.217
6 H -0.208 1.208
7 C -0.341 4.341
8 H 0.096 0.904
9 N -0.311 5.311
10 C 0.047 3.953
11 H 0.169 0.831
12 C -0.178 4.178
13 C -0.167 4.167
14 C 0.016 3.984
15 H 0.106 0.894
16 C 0.024 3.976
17 H 0.095 0.905
18 N -0.355 5.355
19 C 0.300 3.700
20 O -0.424 6.424
21 C -0.114 4.114
22 C -0.035 4.035
23 C -0.381 4.381
24 S 0.369 5.631
25 C -0.200 4.200
26 C -0.106 4.106
27 C -0.208 4.208
28 C -0.198 4.198
29 N -0.174 5.174
30 C -0.182 4.182
31 H 0.064 0.936
32 H 0.074 0.926
33 H 0.068 0.932
34 H 0.069 0.931
35 H 0.076 0.924
36 H 0.237 0.763
37 H 0.128 0.872
38 H 0.128 0.872
39 H 0.194 0.806
40 H 0.150 0.850
41 H 0.117 0.883
42 H 0.127 0.873
43 H 0.126 0.874
44 H 0.119 0.881
45 H 0.077 0.923
46 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 2.544 -15.767 -15.393 22.182
hybrid contribution 0.967 1.887 0.755 2.251
sum 3.511 -13.880 -14.638 20.475
Atomic orbital electron populations
1.69471 1.05003 1.24952 1.57319 1.24704 0.95595 0.97476 1.02885
0.86066 0.78491 0.83373 0.77486 1.21734 1.21729 1.20817 1.19007
0.90203 0.81897 1.43030 0.90390 1.46616 1.01540 0.98528 1.84465
1.23703 0.87343 0.95360 0.88888 0.83140 1.23424 0.94981 0.98255
1.01184 1.23206 0.97510 0.97563 0.98428 1.23243 0.96015 0.86932
0.92211 0.89352 1.22602 0.92819 0.98402 0.83728 0.90516 1.45973
1.43661 1.33951 1.11902 1.20217 0.82944 0.82271 0.84617 1.90674
1.36355 1.31364 1.83973 1.20233 1.02363 0.97832 0.90979 1.19437
0.93022 0.93293 0.97716 1.26764 1.04297 1.04448 1.02628 1.83682
1.28028 1.14675 1.36727 1.25965 0.97190 0.99872 0.96959 1.20386
0.99718 0.87253 1.03204 1.23141 1.03609 1.03305 0.90733 1.23148
1.01098 0.96217 0.99384 1.65880 1.31988 1.03769 1.15769 1.23448
0.94977 0.98319 1.01488 0.93565 0.92613 0.93172 0.93085 0.92413
0.76252 0.87233 0.87152 0.80562 0.84977 0.88349 0.87298 0.87450
0.88148 0.92330 0.92971
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -25.54 10.47 55.49 0.58 -24.96 16
2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16
3 Si 0.91 21.17 29.55 -169.99 -5.02 16.15 16
4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16
5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
7 C -0.21 -5.49 10.59 -15.06 -0.16 -5.65 16
8 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16
9 N -0.59 -13.81 3.00 -145.49 -0.44 -14.25 16
10 C 0.15 3.48 4.67 -62.79 -0.29 3.19 16
11 H 0.15 3.92 5.52 -51.93 -0.29 3.64 16
12 C -0.14 -2.76 6.58 -23.04 -0.15 -2.91 16
13 C -0.13 -2.32 6.51 -23.05 -0.15 -2.47 16
14 C 0.12 2.41 5.07 -62.56 -0.32 2.10 16
15 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16
16 C 0.13 2.46 2.75 -65.44 -0.18 2.28 16
17 H 0.08 1.48 7.29 -51.93 -0.38 1.11 16
18 N -0.71 -12.07 5.08 -51.40 -0.26 -12.33 16
19 C 0.51 8.75 7.82 -10.99 -0.09 8.66 16
20 O -0.55 -11.22 15.72 5.56 0.09 -11.13 16
21 C -0.07 -0.95 6.11 -29.04 -0.18 -1.13 16
22 C 0.10 1.40 5.23 -84.23 -0.44 0.96 16
23 C -0.24 -3.14 11.14 29.12 0.32 -2.82 16
24 S 0.11 1.24 21.94 -107.50 -2.36 -1.12 16
25 C 0.08 0.97 7.04 -13.46 -0.09 0.87 16
26 C -0.08 -0.77 6.33 -91.76 -0.58 -1.35 16
27 C -0.17 -1.10 10.01 -26.73 -0.27 -1.37 16
28 C -0.16 -1.20 10.23 -26.73 -0.27 -1.47 16
29 N -0.46 -6.84 10.53 -8.06 -0.08 -6.93 16
30 C -0.14 -2.92 6.22 -24.24 -0.15 -3.07 16
31 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16
32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16
33 H 0.05 0.90 7.81 -51.93 -0.41 0.49 16
34 H 0.05 0.83 7.82 -51.93 -0.41 0.43 16
35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
36 H 0.40 6.52 8.64 -40.82 -0.35 6.16 16
37 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16
38 H 0.11 1.22 8.14 -51.92 -0.42 0.80 16
39 H 0.18 1.99 8.06 -52.49 -0.42 1.56 16
40 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16
41 H 0.10 0.63 7.22 -51.93 -0.38 0.25 16
42 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16
43 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16
44 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16
45 H 0.06 1.29 7.98 -51.93 -0.41 0.88 16
46 H 0.05 1.02 7.81 -51.93 -0.41 0.61 16
LS Contribution 387.00 15.07 5.83 5.83
Total: -1.00 -31.71 387.00 -11.56 -43.27
By element:
Atomic # 1 Polarization: 16.83 SS G_CDS: -6.80 Total: 10.04 kcal
Atomic # 6 Polarization: -1.47 SS G_CDS: -3.10 Total: -4.57 kcal
Atomic # 7 Polarization: -58.26 SS G_CDS: -0.20 Total: -58.46 kcal
Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal
Atomic # 16 Polarization: 1.24 SS G_CDS: -2.36 Total: -1.12 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -31.71 -11.56 -43.27 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001097982054.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.568 kcal
(2) G-P(sol) polarization free energy of solvation -31.709 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.558 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.267 kcal
(6) G-S(sol) free energy of system = (1) + (5) 79.301 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds