Wall clock time and date at job start Wed Apr 1 2020 05:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48502 * 109.47104 * 269.99871 * 3 2 1 5 5 H 1.48499 * 109.47407 * 30.00250 * 3 2 1 6 6 H 1.48506 * 109.47352 * 150.00127 * 3 2 1 7 7 C 1.38819 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99626 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.50243 * 130.83677 * 359.97438 * 9 7 2 11 11 H 1.08994 * 115.86010 * 0.37103 * 10 9 7 12 12 C 1.55851 * 101.75258 * 234.17597 * 10 9 7 13 13 C 1.56996 * 102.65177 * 327.22732 * 12 10 9 14 14 C 1.50664 * 130.81278 * 180.02562 * 9 7 2 15 15 H 1.08999 * 116.03147 * 359.55203 * 14 9 7 16 16 C 1.55842 * 100.85852 * 233.91858 * 14 9 7 17 17 H 1.09004 * 110.63084 * 208.48776 * 16 14 9 18 18 N 1.46503 * 110.62676 * 85.62675 * 16 14 9 19 19 C 1.34773 * 119.99984 * 157.20359 * 18 16 14 20 20 O 1.21275 * 120.00399 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00051 * 179.97438 * 19 18 16 22 22 C 1.50697 * 109.47406 * 179.97438 * 21 19 18 23 23 C 1.33635 * 122.74873 * 85.02241 * 22 21 19 24 24 S 1.76199 * 107.92344 * 180.02562 * 23 22 21 25 25 C 1.70977 * 90.28221 * 359.97438 * 24 23 22 26 26 C 1.50699 * 124.91502 * 179.97438 * 25 24 23 27 27 C 1.53007 * 117.49979 * 8.64886 * 26 25 24 28 28 C 1.53002 * 60.00137 * 252.51014 * 27 26 25 29 29 N 1.29027 * 110.16578 * 0.02562 * 25 24 23 30 30 C 1.54848 * 103.58720 * 327.05778 * 16 14 9 31 31 H 0.97004 * 119.99768 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.62539 * 85.31824 * 12 10 9 33 33 H 1.09000 * 110.62487 * 208.33926 * 12 10 9 34 34 H 1.08999 * 110.29320 * 241.31960 * 13 12 10 35 35 H 1.08993 * 110.96875 * 118.45177 * 13 12 10 36 36 H 0.97005 * 119.99722 * 337.19695 * 18 16 14 37 37 H 1.09002 * 109.47287 * 59.99447 * 21 19 18 38 38 H 1.09009 * 109.46858 * 299.99938 * 21 19 18 39 39 H 1.08001 * 126.03996 * 0.03618 * 23 22 21 40 40 H 1.08997 * 115.55162 * 154.35494 * 26 25 24 41 41 H 1.08998 * 117.49555 * 0.02562 * 27 26 25 42 42 H 1.09000 * 117.49359 * 145.01616 * 27 26 25 43 43 H 1.09004 * 117.49574 * 252.51706 * 28 27 26 44 44 H 1.08993 * 117.52152 * 107.47982 * 28 27 26 45 45 H 1.09001 * 110.62894 * 118.56840 * 30 16 14 46 46 H 1.08998 * 110.62924 * 241.42883 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1501 -2.6705 0.0005 11 1 -0.8014 -1.7966 -0.0050 12 6 -0.2930 -3.6079 1.2373 13 6 1.0690 -4.3887 1.2363 14 6 1.8207 -3.8110 -0.0005 15 1 2.9029 -3.9410 -0.0082 16 6 1.0659 -4.3846 -1.2375 17 1 0.8918 -5.4541 -1.1192 18 7 1.8147 -4.1182 -2.4682 19 6 1.6144 -4.8851 -3.5582 20 8 0.8146 -5.7959 -3.5202 21 6 2.3843 -4.6107 -4.8244 22 6 1.9784 -5.6025 -5.8839 23 6 0.9130 -5.4245 -6.6706 24 16 0.8032 -6.8080 -7.7561 25 6 2.2013 -7.4879 -7.0446 26 6 2.8244 -8.7991 -7.4492 27 6 2.2823 -9.4805 -8.7073 28 6 1.9634 -10.0580 -7.3268 29 7 2.6451 -6.7163 -6.1106 30 6 -0.2751 -3.6103 -1.2365 31 1 -0.4850 0.8401 0.0004 32 1 -0.4008 -3.0239 2.1513 33 1 -1.1383 -4.2844 1.1108 34 1 0.8922 -5.4572 1.1136 35 1 1.6297 -4.1961 2.1509 36 1 2.4547 -3.3898 -2.4985 37 1 3.4522 -4.7058 -4.6281 38 1 2.1670 -3.5999 -5.1699 39 1 0.2384 -4.5814 -6.6457 40 1 3.8903 -8.8964 -7.2434 41 1 1.4753 -8.9802 -9.2426 42 1 2.9918 -10.0261 -9.3294 43 1 2.4631 -10.9835 -7.0407 44 1 0.9465 -9.9379 -6.9532 45 1 -0.3831 -3.0280 -2.1516 46 1 -1.1142 -4.2957 -1.1177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097982054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:21 Heat of formation + Delta-G solvation = 79.300566 kcal Electronic energy + Delta-G solvation = -27834.848190 eV Core-core repulsion = 24046.359917 eV Total energy + Delta-G solvation = -3788.488273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.32669 -39.47898 -38.21518 -37.37473 -33.71131 -32.54696 -31.99302 -29.08888 -29.06444 -28.42326 -27.18019 -25.73872 -24.18790 -22.83588 -22.14537 -21.19612 -20.09706 -19.82598 -19.50860 -18.66493 -17.76830 -17.00450 -16.76314 -16.37660 -15.80398 -15.14220 -14.86046 -14.61569 -14.42819 -14.21883 -13.93104 -13.75601 -13.51144 -13.08542 -12.77116 -12.58155 -12.23804 -12.00606 -11.98030 -11.81665 -11.38153 -11.16876 -11.12472 -11.11515 -10.94153 -10.92985 -10.91255 -10.50289 -10.39758 -10.11146 -9.90149 -9.73403 -9.68616 -9.41587 -9.25666 -9.17381 -8.97947 -8.68754 -8.42468 -6.96192 -5.75958 -3.15081 0.61594 1.24769 1.62999 2.60654 3.00993 3.34418 3.39932 3.40324 3.41970 3.70785 3.82638 4.38758 4.39447 4.54556 4.62010 4.89038 5.05870 5.12499 5.20557 5.22326 5.25376 5.35691 5.40953 5.46379 5.60858 5.63067 5.66432 5.69332 5.74236 5.87602 6.04475 6.05680 6.12444 6.16378 6.30296 6.42180 6.50012 6.59852 6.75004 6.82392 6.94999 7.14051 7.32567 7.45281 7.69577 7.77578 8.02365 8.15718 8.65768 9.05590 9.68634 10.50209 11.32862 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.002401 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.931485 B =11659.220424 C =12405.598228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.213 4.213 8 H 0.078 0.922 9 N -0.590 5.590 10 C 0.154 3.846 11 H 0.152 0.848 12 C -0.139 4.139 13 C -0.127 4.127 14 C 0.124 3.876 15 H 0.088 0.912 16 C 0.131 3.869 17 H 0.077 0.923 18 N -0.705 5.705 19 C 0.515 3.485 20 O -0.546 6.546 21 C -0.071 4.071 22 C 0.097 3.903 23 C -0.243 4.243 24 S 0.114 5.886 25 C 0.078 3.922 26 C -0.084 4.084 27 C -0.170 4.170 28 C -0.160 4.160 29 N -0.460 5.460 30 C -0.142 4.142 31 H 0.254 0.746 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.403 0.597 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.177 0.823 40 H 0.132 0.868 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.058 0.942 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.304 -15.040 -14.935 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.341 4.341 8 H 0.096 0.904 9 N -0.311 5.311 10 C 0.047 3.953 11 H 0.169 0.831 12 C -0.178 4.178 13 C -0.167 4.167 14 C 0.016 3.984 15 H 0.106 0.894 16 C 0.024 3.976 17 H 0.095 0.905 18 N -0.355 5.355 19 C 0.300 3.700 20 O -0.424 6.424 21 C -0.114 4.114 22 C -0.035 4.035 23 C -0.381 4.381 24 S 0.369 5.631 25 C -0.200 4.200 26 C -0.106 4.106 27 C -0.208 4.208 28 C -0.198 4.198 29 N -0.174 5.174 30 C -0.182 4.182 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.237 0.763 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.194 0.806 40 H 0.150 0.850 41 H 0.117 0.883 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.119 0.881 45 H 0.077 0.923 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.544 -15.767 -15.393 22.182 hybrid contribution 0.967 1.887 0.755 2.251 sum 3.511 -13.880 -14.638 20.475 Atomic orbital electron populations 1.69471 1.05003 1.24952 1.57319 1.24704 0.95595 0.97476 1.02885 0.86066 0.78491 0.83373 0.77486 1.21734 1.21729 1.20817 1.19007 0.90203 0.81897 1.43030 0.90390 1.46616 1.01540 0.98528 1.84465 1.23703 0.87343 0.95360 0.88888 0.83140 1.23424 0.94981 0.98255 1.01184 1.23206 0.97510 0.97563 0.98428 1.23243 0.96015 0.86932 0.92211 0.89352 1.22602 0.92819 0.98402 0.83728 0.90516 1.45973 1.43661 1.33951 1.11902 1.20217 0.82944 0.82271 0.84617 1.90674 1.36355 1.31364 1.83973 1.20233 1.02363 0.97832 0.90979 1.19437 0.93022 0.93293 0.97716 1.26764 1.04297 1.04448 1.02628 1.83682 1.28028 1.14675 1.36727 1.25965 0.97190 0.99872 0.96959 1.20386 0.99718 0.87253 1.03204 1.23141 1.03609 1.03305 0.90733 1.23148 1.01098 0.96217 0.99384 1.65880 1.31988 1.03769 1.15769 1.23448 0.94977 0.98319 1.01488 0.93565 0.92613 0.93172 0.93085 0.92413 0.76252 0.87233 0.87152 0.80562 0.84977 0.88349 0.87298 0.87450 0.88148 0.92330 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.54 10.47 55.49 0.58 -24.96 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.17 29.55 -169.99 -5.02 16.15 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.21 -5.49 10.59 -15.06 -0.16 -5.65 16 8 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.59 -13.81 3.00 -145.49 -0.44 -14.25 16 10 C 0.15 3.48 4.67 -62.79 -0.29 3.19 16 11 H 0.15 3.92 5.52 -51.93 -0.29 3.64 16 12 C -0.14 -2.76 6.58 -23.04 -0.15 -2.91 16 13 C -0.13 -2.32 6.51 -23.05 -0.15 -2.47 16 14 C 0.12 2.41 5.07 -62.56 -0.32 2.10 16 15 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 16 C 0.13 2.46 2.75 -65.44 -0.18 2.28 16 17 H 0.08 1.48 7.29 -51.93 -0.38 1.11 16 18 N -0.71 -12.07 5.08 -51.40 -0.26 -12.33 16 19 C 0.51 8.75 7.82 -10.99 -0.09 8.66 16 20 O -0.55 -11.22 15.72 5.56 0.09 -11.13 16 21 C -0.07 -0.95 6.11 -29.04 -0.18 -1.13 16 22 C 0.10 1.40 5.23 -84.23 -0.44 0.96 16 23 C -0.24 -3.14 11.14 29.12 0.32 -2.82 16 24 S 0.11 1.24 21.94 -107.50 -2.36 -1.12 16 25 C 0.08 0.97 7.04 -13.46 -0.09 0.87 16 26 C -0.08 -0.77 6.33 -91.76 -0.58 -1.35 16 27 C -0.17 -1.10 10.01 -26.73 -0.27 -1.37 16 28 C -0.16 -1.20 10.23 -26.73 -0.27 -1.47 16 29 N -0.46 -6.84 10.53 -8.06 -0.08 -6.93 16 30 C -0.14 -2.92 6.22 -24.24 -0.15 -3.07 16 31 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.90 7.81 -51.93 -0.41 0.49 16 34 H 0.05 0.83 7.82 -51.93 -0.41 0.43 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.40 6.52 8.64 -40.82 -0.35 6.16 16 37 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.11 1.22 8.14 -51.92 -0.42 0.80 16 39 H 0.18 1.99 8.06 -52.49 -0.42 1.56 16 40 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.10 0.63 7.22 -51.93 -0.38 0.25 16 42 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.29 7.98 -51.93 -0.41 0.88 16 46 H 0.05 1.02 7.81 -51.93 -0.41 0.61 16 LS Contribution 387.00 15.07 5.83 5.83 Total: -1.00 -31.71 387.00 -11.56 -43.27 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.80 Total: 10.04 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -3.10 Total: -4.57 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.20 Total: -58.46 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.36 Total: -1.12 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.71 -11.56 -43.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097982054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.568 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds