Wall clock time and date at job start Wed Apr 1 2020 05:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48502 * 109.47104 * 269.99871 * 3 2 1 5 5 H 1.48499 * 109.47407 * 30.00250 * 3 2 1 6 6 H 1.48506 * 109.47352 * 150.00127 * 3 2 1 7 7 C 1.38819 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99626 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.50243 * 130.83677 * 359.97438 * 9 7 2 11 11 H 1.08994 * 115.86010 * 0.37103 * 10 9 7 12 12 C 1.55851 * 101.75258 * 234.17597 * 10 9 7 13 13 C 1.56996 * 102.65177 * 327.22732 * 12 10 9 14 14 C 1.50664 * 130.81278 * 180.02562 * 9 7 2 15 15 H 1.08999 * 116.03147 * 359.55203 * 14 9 7 16 16 C 1.55842 * 100.85852 * 233.91858 * 14 9 7 17 17 H 1.09004 * 110.63084 * 208.48776 * 16 14 9 18 18 N 1.46503 * 110.62676 * 85.62675 * 16 14 9 19 19 C 1.34773 * 119.99984 * 157.20359 * 18 16 14 20 20 O 1.21275 * 120.00399 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00051 * 179.97438 * 19 18 16 22 22 C 1.50697 * 109.47406 * 179.97438 * 21 19 18 23 23 C 1.33635 * 122.74873 * 85.02241 * 22 21 19 24 24 S 1.76199 * 107.92344 * 180.02562 * 23 22 21 25 25 C 1.70977 * 90.28221 * 359.97438 * 24 23 22 26 26 C 1.50699 * 124.91502 * 179.97438 * 25 24 23 27 27 C 1.53007 * 117.49979 * 8.64886 * 26 25 24 28 28 C 1.53002 * 60.00137 * 252.51014 * 27 26 25 29 29 N 1.29027 * 110.16578 * 0.02562 * 25 24 23 30 30 C 1.54848 * 103.58720 * 327.05778 * 16 14 9 31 31 H 0.97004 * 119.99768 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.62539 * 85.31824 * 12 10 9 33 33 H 1.09000 * 110.62487 * 208.33926 * 12 10 9 34 34 H 1.08999 * 110.29320 * 241.31960 * 13 12 10 35 35 H 1.08993 * 110.96875 * 118.45177 * 13 12 10 36 36 H 0.97005 * 119.99722 * 337.19695 * 18 16 14 37 37 H 1.09002 * 109.47287 * 59.99447 * 21 19 18 38 38 H 1.09009 * 109.46858 * 299.99938 * 21 19 18 39 39 H 1.08001 * 126.03996 * 0.03618 * 23 22 21 40 40 H 1.08997 * 115.55162 * 154.35494 * 26 25 24 41 41 H 1.08998 * 117.49555 * 0.02562 * 27 26 25 42 42 H 1.09000 * 117.49359 * 145.01616 * 27 26 25 43 43 H 1.09004 * 117.49574 * 252.51706 * 28 27 26 44 44 H 1.08993 * 117.52152 * 107.47982 * 28 27 26 45 45 H 1.09001 * 110.62894 * 118.56840 * 30 16 14 46 46 H 1.08998 * 110.62924 * 241.42883 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1501 -2.6705 0.0005 11 1 -0.8014 -1.7966 -0.0050 12 6 -0.2930 -3.6079 1.2373 13 6 1.0690 -4.3887 1.2363 14 6 1.8207 -3.8110 -0.0005 15 1 2.9029 -3.9410 -0.0082 16 6 1.0659 -4.3846 -1.2375 17 1 0.8918 -5.4541 -1.1192 18 7 1.8147 -4.1182 -2.4682 19 6 1.6144 -4.8851 -3.5582 20 8 0.8146 -5.7959 -3.5202 21 6 2.3843 -4.6107 -4.8244 22 6 1.9784 -5.6025 -5.8839 23 6 0.9130 -5.4245 -6.6706 24 16 0.8032 -6.8080 -7.7561 25 6 2.2013 -7.4879 -7.0446 26 6 2.8244 -8.7991 -7.4492 27 6 2.2823 -9.4805 -8.7073 28 6 1.9634 -10.0580 -7.3268 29 7 2.6451 -6.7163 -6.1106 30 6 -0.2751 -3.6103 -1.2365 31 1 -0.4850 0.8401 0.0004 32 1 -0.4008 -3.0239 2.1513 33 1 -1.1383 -4.2844 1.1108 34 1 0.8922 -5.4572 1.1136 35 1 1.6297 -4.1961 2.1509 36 1 2.4547 -3.3898 -2.4985 37 1 3.4522 -4.7058 -4.6281 38 1 2.1670 -3.5999 -5.1699 39 1 0.2384 -4.5814 -6.6457 40 1 3.8903 -8.8964 -7.2434 41 1 1.4753 -8.9802 -9.2426 42 1 2.9918 -10.0261 -9.3294 43 1 2.4631 -10.9835 -7.0407 44 1 0.9465 -9.9379 -6.9532 45 1 -0.3831 -3.0280 -2.1516 46 1 -1.1142 -4.2957 -1.1177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097982054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:20 Heat of formation + Delta-G solvation = 60.680141 kcal Electronic energy + Delta-G solvation = -27835.655632 eV Core-core repulsion = 24046.359917 eV Total energy + Delta-G solvation = -3789.295715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.50066 -40.82939 -39.60874 -38.07892 -35.25488 -34.38225 -33.05498 -30.93492 -30.48043 -29.85512 -28.52213 -26.62857 -26.05990 -23.43657 -23.32823 -22.24960 -21.51866 -21.31702 -20.69472 -20.25241 -18.82404 -18.69342 -18.08444 -17.25660 -17.13960 -16.74590 -16.11888 -15.93764 -15.60616 -15.47552 -15.25872 -15.08236 -14.70821 -14.28040 -14.17520 -13.74969 -13.65082 -13.41436 -13.11649 -12.90499 -12.84037 -12.74328 -12.65090 -12.56224 -12.24588 -12.09566 -11.97883 -11.91332 -11.81567 -11.67407 -11.50816 -11.22877 -10.96118 -10.92537 -10.71292 -10.65638 -10.32454 -9.93025 -9.61229 -8.85905 -7.74016 -5.13905 -0.30859 0.36341 0.70039 1.50571 1.51429 1.59242 1.59778 1.67868 2.41454 2.51641 2.80200 3.02826 3.38882 3.45274 3.68275 3.79607 3.91646 3.99679 4.02519 4.07739 4.12650 4.21734 4.27998 4.38589 4.44551 4.46246 4.48705 4.62360 4.70457 4.71317 4.72620 4.82768 4.89439 4.91793 5.03175 5.07321 5.12936 5.16462 5.17267 5.19226 5.37634 5.52814 5.60774 5.72423 5.89868 6.27867 6.65828 6.75637 7.07406 7.30519 7.73912 8.59884 9.33196 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.002401 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.931485 B =11659.220424 C =12405.598228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.974 3.026 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.212 4.212 8 H 0.087 0.913 9 N -0.608 5.608 10 C 0.141 3.859 11 H 0.115 0.885 12 C -0.133 4.133 13 C -0.119 4.119 14 C 0.126 3.874 15 H 0.104 0.896 16 C 0.142 3.858 17 H 0.079 0.921 18 N -0.703 5.703 19 C 0.516 3.484 20 O -0.582 6.582 21 C -0.064 4.064 22 C 0.076 3.924 23 C -0.263 4.263 24 S 0.158 5.842 25 C 0.068 3.932 26 C -0.110 4.110 27 C -0.148 4.148 28 C -0.159 4.159 29 N -0.496 5.496 30 C -0.132 4.132 31 H 0.245 0.755 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.408 0.592 37 H 0.124 0.876 38 H 0.133 0.867 39 H 0.187 0.813 40 H 0.135 0.865 41 H 0.100 0.900 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.090 0.910 45 H 0.035 0.965 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.594 -16.817 -16.099 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.230 1.230 6 H -0.197 1.197 7 C -0.341 4.341 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.034 3.966 11 H 0.132 0.868 12 C -0.172 4.172 13 C -0.159 4.159 14 C 0.020 3.980 15 H 0.122 0.878 16 C 0.035 3.965 17 H 0.097 0.903 18 N -0.353 5.353 19 C 0.303 3.697 20 O -0.463 6.463 21 C -0.106 4.106 22 C -0.056 4.056 23 C -0.402 4.402 24 S 0.414 5.586 25 C -0.209 4.209 26 C -0.131 4.131 27 C -0.186 4.186 28 C -0.197 4.197 29 N -0.211 5.211 30 C -0.172 4.172 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.244 0.756 37 H 0.142 0.858 38 H 0.151 0.849 39 H 0.204 0.796 40 H 0.153 0.847 41 H 0.118 0.882 42 H 0.152 0.848 43 H 0.143 0.857 44 H 0.108 0.892 45 H 0.054 0.946 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.863 -17.568 -16.567 24.455 hybrid contribution 0.526 2.340 1.064 2.624 sum 4.390 -15.227 -15.503 22.170 Atomic orbital electron populations 1.69726 1.06222 1.24719 1.59192 1.25426 0.96302 1.00336 1.03995 0.85120 0.77516 0.79748 0.77161 1.21654 1.22993 1.19692 1.19364 0.90790 0.82877 1.41044 0.89569 1.46787 1.02057 0.99551 1.84597 1.23532 0.86803 0.95119 0.91139 0.86789 1.23333 0.96977 0.98024 0.98901 1.23163 0.96058 0.98754 0.97886 1.23441 0.97090 0.84657 0.92859 0.87774 1.22378 0.91856 0.97937 0.84319 0.90300 1.45933 1.43491 1.34191 1.11638 1.20786 0.82382 0.81246 0.85300 1.90649 1.38078 1.32925 1.84632 1.20234 1.02492 0.98908 0.88998 1.19614 0.93794 0.93764 0.98432 1.27054 1.04261 1.05725 1.03207 1.83421 1.26806 1.13059 1.35273 1.26573 0.97561 1.00502 0.96275 1.20571 1.00062 0.86604 1.05912 1.23271 1.03461 1.01792 0.90089 1.23243 1.00310 0.95967 1.00227 1.65915 1.33303 1.04541 1.17306 1.23301 0.96591 0.97903 0.99408 0.94576 0.94226 0.91111 0.90365 0.92049 0.75609 0.85757 0.84934 0.79615 0.84689 0.88201 0.84848 0.85683 0.89175 0.94602 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.30 10.47 21.65 0.23 -54.08 16 2 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 3 Si 0.97 43.96 29.55 68.60 2.03 45.99 16 4 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.21 -10.85 10.59 84.04 0.89 -9.96 16 8 H 0.09 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.61 -28.25 3.00 -614.20 -1.84 -30.10 16 10 C 0.14 6.45 4.67 46.23 0.22 6.66 16 11 H 0.11 6.19 5.52 -2.39 -0.01 6.17 16 12 C -0.13 -5.17 6.58 32.98 0.22 -4.95 16 13 C -0.12 -4.08 6.51 32.98 0.21 -3.86 16 14 C 0.13 4.69 5.07 46.14 0.23 4.93 16 15 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 16 C 0.14 5.17 2.75 46.60 0.13 5.30 16 17 H 0.08 2.90 7.29 -2.38 -0.02 2.88 16 18 N -0.70 -23.35 5.08 -434.92 -2.21 -25.56 16 19 C 0.52 17.16 7.82 87.66 0.69 17.84 16 20 O -0.58 -23.73 15.72 -3.01 -0.05 -23.78 16 21 C -0.06 -1.65 6.11 29.10 0.18 -1.47 16 22 C 0.08 2.14 5.23 41.52 0.22 2.36 16 23 C -0.26 -6.65 11.14 66.77 0.74 -5.91 16 24 S 0.16 3.27 21.94 -56.49 -1.24 2.03 16 25 C 0.07 1.63 7.04 88.52 0.62 2.25 16 26 C -0.11 -1.86 6.33 -11.54 -0.07 -1.93 16 27 C -0.15 -1.55 10.01 30.60 0.31 -1.24 16 28 C -0.16 -2.07 10.23 30.60 0.31 -1.76 16 29 N -0.50 -14.52 10.53 -179.41 -1.89 -16.41 16 30 C -0.13 -5.40 6.22 32.21 0.20 -5.20 16 31 H 0.24 13.83 8.31 -92.71 -0.77 13.06 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.42 7.81 -2.39 -0.02 2.41 16 34 H 0.08 2.29 7.82 -2.39 -0.02 2.27 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.41 12.73 8.64 -92.70 -0.80 11.93 16 37 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.13 2.75 8.14 -2.38 -0.02 2.73 16 39 H 0.19 4.09 8.06 -2.91 -0.02 4.07 16 40 H 0.14 2.15 8.14 -2.39 -0.02 2.14 16 41 H 0.10 1.02 7.22 -2.39 -0.02 1.00 16 42 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.04 1.60 7.98 -2.39 -0.02 1.58 16 46 H 0.06 2.36 7.81 -2.39 -0.02 2.34 16 Total: -1.00 -69.42 387.00 0.79 -68.63 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.21 Total: 33.43 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.56 Total: -0.15 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -5.72 Total: -126.15 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.78 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.24 Total: 2.03 kcal Total: -69.42 0.79 -68.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097982054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.309 kcal (2) G-P(sol) polarization free energy of solvation -69.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds