Wall clock time and date at job start Wed Apr 1 2020 04:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00238 * 2 1 4 4 H 1.48498 * 109.46620 * 239.99674 * 3 2 1 5 5 H 1.48502 * 109.46843 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47078 * 119.99793 * 3 2 1 7 7 C 1.38814 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00274 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.47214 * 126.70263 * 359.95023 * 9 7 2 11 11 C 1.53779 * 106.38335 * 211.32052 * 10 9 7 12 12 H 1.09002 * 111.70890 * 219.70229 * 11 10 9 13 13 C 1.54325 * 109.79197 * 95.22289 * 11 10 9 14 14 C 1.54202 * 104.33997 * 222.84966 * 13 11 10 15 15 C 1.55055 * 102.51016 * 39.00132 * 14 13 11 16 16 C 1.54328 * 103.93251 * 320.56378 * 15 14 13 17 17 N 1.46501 * 111.68481 * 262.79179 * 16 15 14 18 18 C 1.34772 * 120.00230 * 298.88236 * 17 16 15 19 19 O 1.21620 * 120.00328 * 0.02562 * 18 17 16 20 20 C 1.47265 * 120.00020 * 180.02562 * 18 17 16 21 21 N 1.29765 * 125.52278 * 359.69783 * 20 18 17 22 22 C 1.32594 * 116.75054 * 179.85238 * 21 20 18 23 23 C 1.34629 * 114.30983 * 0.40869 * 22 21 20 24 24 S 1.71615 * 109.60013 * 359.80876 * 23 22 21 25 25 C 1.51949 * 110.68303 * 179.83012 * 23 22 21 26 26 C 1.54225 * 104.84785 * 17.39852 * 25 23 22 27 27 C 1.52801 * 136.15338 * 180.02562 * 22 21 20 28 28 C 1.47217 * 126.70352 * 180.02562 * 9 7 2 29 29 H 0.97000 * 119.99622 * 0.02562 * 1 2 3 30 30 H 1.08996 * 110.07659 * 92.09129 * 10 9 7 31 31 H 1.09002 * 110.07526 * 330.54972 * 10 9 7 32 32 H 1.08993 * 110.53716 * 340.30846 * 13 11 10 33 33 H 1.09000 * 110.53237 * 103.08367 * 13 11 10 34 34 H 1.08998 * 110.18469 * 280.90439 * 14 13 11 35 35 H 1.09001 * 111.27882 * 157.59950 * 14 13 11 36 36 H 1.08998 * 110.53604 * 201.94478 * 15 14 13 37 37 H 1.09007 * 110.53185 * 79.16757 * 15 14 13 38 38 H 0.97003 * 119.99754 * 118.88466 * 17 16 15 39 39 H 1.08997 * 110.36389 * 136.24867 * 25 23 22 40 40 H 1.09003 * 110.35860 * 258.55838 * 25 23 22 41 41 H 1.08999 * 110.95387 * 91.61625 * 26 25 23 42 42 H 1.09002 * 110.95250 * 215.29701 * 26 25 23 43 43 H 1.09001 * 110.31075 * 43.86318 * 27 22 21 44 44 H 1.08990 * 110.39828 * 281.71928 * 27 22 21 45 45 H 1.08994 * 110.07063 * 29.44773 * 28 9 7 46 46 H 1.09005 * 110.06643 * 267.90590 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1366 -2.5598 0.0010 11 6 -0.4200 -3.8624 0.7678 12 1 -1.2196 -4.4385 0.3022 13 6 -0.7333 -3.5418 2.2445 14 6 0.0417 -4.6115 3.0402 15 6 1.3661 -4.7294 2.2426 16 6 0.9213 -4.6367 0.7678 17 7 0.7836 -5.9624 0.1595 18 6 1.8526 -6.7786 0.0734 19 8 2.9315 -6.4149 0.5010 20 6 1.7143 -8.1110 -0.5385 21 7 0.6177 -8.6083 -1.0223 22 6 0.6917 -9.8281 -1.5369 23 6 1.9163 -10.3836 -1.4720 24 16 3.0064 -9.2885 -0.7254 25 6 1.9065 -11.7767 -2.0788 26 6 0.6169 -11.8310 -2.9229 27 6 -0.2782 -10.8052 -2.1998 28 6 1.9077 -3.7402 0.0016 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5042 -2.6404 -1.0219 31 1 -0.6120 -1.7182 0.5048 32 1 -0.3587 -2.5530 2.5089 33 1 -1.8051 -3.6083 2.4311 34 1 -0.5033 -5.5554 3.0309 35 1 0.2311 -4.2841 4.0625 36 1 1.8459 -5.6885 2.4378 37 1 2.0371 -3.9073 2.4920 38 1 -0.0770 -6.2527 -0.1812 39 1 2.7813 -11.9204 -2.7128 40 1 1.8779 -12.5321 -1.2935 41 1 0.8105 -11.5240 -3.9507 42 1 0.1728 -12.8260 -2.8925 43 1 -0.9104 -10.2824 -2.9175 44 1 -0.8910 -11.3014 -1.4474 45 1 2.8741 -3.7310 0.5056 46 1 2.0220 -4.0990 -1.0214 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098943682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:21 Heat of formation + Delta-G solvation = 41.214850 kcal Electronic energy + Delta-G solvation = -28498.543972 eV Core-core repulsion = 24708.404178 eV Total energy + Delta-G solvation = -3790.139794 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -40.71803 -40.04916 -38.15068 -36.16968 -34.42650 -33.39944 -31.42562 -29.63363 -29.04803 -28.81997 -27.51770 -25.36734 -24.63504 -24.20216 -22.20773 -21.18298 -20.53588 -20.09801 -19.07506 -18.67747 -18.22067 -17.23626 -16.56638 -16.18146 -15.66659 -15.14897 -14.77834 -14.41132 -14.36991 -14.08689 -13.65281 -13.57619 -13.46895 -13.38341 -13.24307 -13.07162 -12.62971 -12.38873 -11.84141 -11.65796 -11.45417 -11.39896 -11.28956 -11.02375 -10.89306 -10.69564 -10.56626 -10.33953 -10.22147 -10.20932 -10.05516 -9.94014 -9.91164 -9.69984 -9.62575 -9.52308 -8.87611 -8.70993 -8.58331 -6.83679 -5.61781 -3.06216 0.13579 0.86682 1.56942 2.14089 3.14043 3.24121 3.43118 3.46970 3.48356 3.66526 4.06912 4.36584 4.51553 4.53063 4.77907 4.96093 5.01262 5.14094 5.16056 5.21689 5.31791 5.38180 5.43817 5.51454 5.54268 5.67861 5.69745 5.82781 5.88951 5.90822 6.03682 6.13146 6.17094 6.25482 6.38233 6.41828 6.58906 6.65851 6.79191 6.84584 6.98167 7.08922 7.28443 7.45354 7.64376 7.70536 7.86382 8.27970 8.43594 9.23798 9.83968 10.51243 11.39509 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.019059 B = 0.002627 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.774981 B =10655.454847 C =10907.358533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.215 4.215 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.139 3.861 11 C -0.112 4.112 12 H 0.070 0.930 13 C -0.108 4.108 14 C -0.124 4.124 15 C -0.112 4.112 16 C 0.155 3.845 17 N -0.680 5.680 18 C 0.595 3.405 19 O -0.520 6.520 20 C 0.003 3.997 21 N -0.421 5.421 22 C 0.035 3.965 23 C -0.276 4.276 24 S 0.252 5.748 25 C -0.037 4.037 26 C -0.117 4.117 27 C -0.040 4.040 28 C 0.141 3.859 29 H 0.253 0.747 30 H 0.005 0.995 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.406 0.594 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.054 0.946 46 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 -24.730 -1.529 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.747 3.253 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.343 4.343 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.014 3.986 11 C -0.133 4.133 12 H 0.089 0.911 13 C -0.146 4.146 14 C -0.162 4.162 15 C -0.150 4.150 16 C 0.069 3.931 17 N -0.330 5.330 18 C 0.376 3.624 19 O -0.396 6.396 20 C -0.274 4.274 21 N -0.138 5.138 22 C -0.101 4.101 23 C -0.398 4.398 24 S 0.510 5.490 25 C -0.076 4.076 26 C -0.156 4.156 27 C -0.080 4.080 28 C 0.013 3.987 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.148 0.852 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.242 0.758 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.072 0.928 46 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 0.317 -23.793 -0.890 23.812 hybrid contribution -0.761 0.149 -0.714 1.054 sum -0.445 -23.645 -1.604 23.703 Atomic orbital electron populations 1.69578 1.04859 1.24779 1.57955 1.24756 0.95710 0.97630 1.02607 0.86121 0.78376 0.82919 0.77926 1.21265 1.21587 1.21133 1.19059 0.90499 0.82107 1.42644 0.90373 1.44438 1.01773 0.99489 1.85880 1.22030 0.85686 0.94562 0.96346 1.23042 0.93874 0.98824 0.97542 0.91146 1.22266 0.98831 0.99876 0.93635 1.22452 0.96437 0.98719 0.98602 1.22666 0.97252 1.02216 0.92864 1.21970 0.97894 0.80024 0.93238 1.45835 1.11577 1.15869 1.59735 1.16679 0.85101 0.81521 0.79132 1.90870 1.26157 1.74308 1.48243 1.27531 0.91607 1.01103 1.07144 1.65914 1.27468 1.11051 1.09347 1.21699 0.95404 0.90472 1.02536 1.26968 0.99334 1.04795 1.08747 1.83870 1.10701 1.04430 1.49972 1.20701 0.99393 0.89069 0.98467 1.22342 0.94417 0.99566 0.99257 1.20892 0.95650 0.92694 0.98777 1.21515 0.95052 0.85969 0.96189 0.93622 0.97746 0.85221 0.90243 0.92309 0.92634 0.91958 0.91748 0.90047 0.75774 0.90104 0.89465 0.90255 0.89422 0.89804 0.89513 0.92809 0.96800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.52 10.08 55.49 0.56 -25.96 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.92 22.20 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.21 -6.04 10.34 -15.06 -0.16 -6.19 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.59 -15.39 3.39 -171.15 -0.58 -15.97 16 10 C 0.14 3.37 5.59 -3.25 -0.02 3.35 16 11 C -0.11 -2.14 3.65 -88.53 -0.32 -2.47 16 12 H 0.07 1.20 7.71 -51.93 -0.40 0.80 16 13 C -0.11 -1.90 6.21 -25.41 -0.16 -2.06 16 14 C -0.12 -1.97 6.88 -25.02 -0.17 -2.14 16 15 C -0.11 -2.01 5.52 -24.95 -0.14 -2.15 16 16 C 0.16 2.94 0.92 -129.74 -0.12 2.82 16 17 N -0.68 -11.36 5.21 -46.80 -0.24 -11.60 16 18 C 0.59 10.11 7.12 -12.59 -0.09 10.02 16 19 O -0.52 -10.05 14.92 5.26 0.08 -9.97 16 20 C 0.00 0.05 7.44 -14.76 -0.11 -0.06 16 21 N -0.42 -5.88 10.23 -6.78 -0.07 -5.95 16 22 C 0.04 0.40 7.62 -82.49 -0.63 -0.23 16 23 C -0.28 -2.81 7.17 -34.97 -0.25 -3.06 16 24 S 0.25 2.97 23.03 -107.50 -2.48 0.50 16 25 C -0.04 -0.23 6.80 -26.62 -0.18 -0.41 16 26 C -0.12 -0.61 7.11 -25.49 -0.18 -0.79 16 27 C -0.04 -0.31 6.81 -26.23 -0.18 -0.48 16 28 C 0.14 3.21 5.30 -3.26 -0.02 3.19 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.13 3.46 4.93 -51.93 -0.26 3.20 16 32 H 0.08 1.62 7.61 -51.93 -0.40 1.22 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.15 6.65 -51.93 -0.35 0.80 16 37 H 0.08 1.62 7.56 -51.92 -0.39 1.22 16 38 H 0.41 6.13 7.95 -40.82 -0.32 5.81 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 1.27 7.55 -51.93 -0.39 0.88 16 46 H 0.01 0.34 8.08 -51.93 -0.42 -0.08 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -31.60 373.29 -11.64 -43.25 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.70 Total: 4.00 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.82 Total: -1.09 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.33 Total: -59.48 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.48 Total: 0.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.60 -11.64 -43.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098943682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.464 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds