Wall clock time and date at job start Wed Apr 1 2020 04:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00238 * 2 1 4 4 H 1.48498 * 109.46620 * 239.99674 * 3 2 1 5 5 H 1.48502 * 109.46843 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47078 * 119.99793 * 3 2 1 7 7 C 1.38814 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00274 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.47214 * 126.70263 * 359.95023 * 9 7 2 11 11 C 1.53779 * 106.38335 * 211.32052 * 10 9 7 12 12 H 1.09002 * 111.70890 * 219.70229 * 11 10 9 13 13 C 1.54325 * 109.79197 * 95.22289 * 11 10 9 14 14 C 1.54202 * 104.33997 * 222.84966 * 13 11 10 15 15 C 1.55055 * 102.51016 * 39.00132 * 14 13 11 16 16 C 1.54328 * 103.93251 * 320.56378 * 15 14 13 17 17 N 1.46501 * 111.68481 * 262.79179 * 16 15 14 18 18 C 1.34772 * 120.00230 * 298.88236 * 17 16 15 19 19 O 1.21620 * 120.00328 * 0.02562 * 18 17 16 20 20 C 1.47265 * 120.00020 * 180.02562 * 18 17 16 21 21 N 1.29765 * 125.52278 * 359.69783 * 20 18 17 22 22 C 1.32594 * 116.75054 * 179.85238 * 21 20 18 23 23 C 1.34629 * 114.30983 * 0.40869 * 22 21 20 24 24 S 1.71615 * 109.60013 * 359.80876 * 23 22 21 25 25 C 1.51949 * 110.68303 * 179.83012 * 23 22 21 26 26 C 1.54225 * 104.84785 * 17.39852 * 25 23 22 27 27 C 1.52801 * 136.15338 * 180.02562 * 22 21 20 28 28 C 1.47217 * 126.70352 * 180.02562 * 9 7 2 29 29 H 0.97000 * 119.99622 * 0.02562 * 1 2 3 30 30 H 1.08996 * 110.07659 * 92.09129 * 10 9 7 31 31 H 1.09002 * 110.07526 * 330.54972 * 10 9 7 32 32 H 1.08993 * 110.53716 * 340.30846 * 13 11 10 33 33 H 1.09000 * 110.53237 * 103.08367 * 13 11 10 34 34 H 1.08998 * 110.18469 * 280.90439 * 14 13 11 35 35 H 1.09001 * 111.27882 * 157.59950 * 14 13 11 36 36 H 1.08998 * 110.53604 * 201.94478 * 15 14 13 37 37 H 1.09007 * 110.53185 * 79.16757 * 15 14 13 38 38 H 0.97003 * 119.99754 * 118.88466 * 17 16 15 39 39 H 1.08997 * 110.36389 * 136.24867 * 25 23 22 40 40 H 1.09003 * 110.35860 * 258.55838 * 25 23 22 41 41 H 1.08999 * 110.95387 * 91.61625 * 26 25 23 42 42 H 1.09002 * 110.95250 * 215.29701 * 26 25 23 43 43 H 1.09001 * 110.31075 * 43.86318 * 27 22 21 44 44 H 1.08990 * 110.39828 * 281.71928 * 27 22 21 45 45 H 1.08994 * 110.07063 * 29.44773 * 28 9 7 46 46 H 1.09005 * 110.06643 * 267.90590 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1366 -2.5598 0.0010 11 6 -0.4200 -3.8624 0.7678 12 1 -1.2196 -4.4385 0.3022 13 6 -0.7333 -3.5418 2.2445 14 6 0.0417 -4.6115 3.0402 15 6 1.3661 -4.7294 2.2426 16 6 0.9213 -4.6367 0.7678 17 7 0.7836 -5.9624 0.1595 18 6 1.8526 -6.7786 0.0734 19 8 2.9315 -6.4149 0.5010 20 6 1.7143 -8.1110 -0.5385 21 7 0.6177 -8.6083 -1.0223 22 6 0.6917 -9.8281 -1.5369 23 6 1.9163 -10.3836 -1.4720 24 16 3.0064 -9.2885 -0.7254 25 6 1.9065 -11.7767 -2.0788 26 6 0.6169 -11.8310 -2.9229 27 6 -0.2782 -10.8052 -2.1998 28 6 1.9077 -3.7402 0.0016 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5042 -2.6404 -1.0219 31 1 -0.6120 -1.7182 0.5048 32 1 -0.3587 -2.5530 2.5089 33 1 -1.8051 -3.6083 2.4311 34 1 -0.5033 -5.5554 3.0309 35 1 0.2311 -4.2841 4.0625 36 1 1.8459 -5.6885 2.4378 37 1 2.0371 -3.9073 2.4920 38 1 -0.0770 -6.2527 -0.1812 39 1 2.7813 -11.9204 -2.7128 40 1 1.8779 -12.5321 -1.2935 41 1 0.8105 -11.5240 -3.9507 42 1 0.1728 -12.8260 -2.8925 43 1 -0.9104 -10.2824 -2.9175 44 1 -0.8910 -11.3014 -1.4474 45 1 2.8741 -3.7310 0.5056 46 1 2.0220 -4.0990 -1.0214 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098943682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:20 Heat of formation + Delta-G solvation = 21.368944 kcal Electronic energy + Delta-G solvation = -28499.404555 eV Core-core repulsion = 24708.404178 eV Total energy + Delta-G solvation = -3791.000377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.88671 -41.22707 -39.61193 -36.92874 -36.29618 -34.79590 -33.44264 -31.17256 -30.21248 -29.57683 -28.94124 -26.64641 -26.35434 -25.80397 -23.18149 -22.36995 -22.14704 -21.24118 -20.53340 -19.93169 -19.26287 -18.95072 -17.87000 -17.20372 -16.95538 -16.72441 -16.37567 -15.81891 -15.56395 -15.38177 -15.10672 -15.02169 -14.73641 -14.64793 -14.37722 -14.29051 -13.74655 -13.63676 -13.12084 -13.00037 -12.81768 -12.79770 -12.28393 -12.23409 -12.14709 -12.11636 -12.07668 -11.94632 -11.88859 -11.75835 -11.70409 -11.65398 -11.44334 -11.35504 -10.85654 -10.75624 -10.51055 -10.23007 -9.62657 -8.94223 -7.76822 -5.25408 -0.84418 -0.07209 0.66864 1.14739 1.45932 1.49166 1.55567 1.93791 2.04791 2.47693 2.67692 3.29062 3.37122 3.47508 3.56099 3.68850 3.80691 3.84497 4.02064 4.15412 4.35085 4.38796 4.40391 4.44298 4.52750 4.55918 4.67783 4.74405 4.77504 4.81837 4.84751 4.88697 4.90571 5.00398 5.06319 5.10524 5.18292 5.19303 5.24648 5.31110 5.38853 5.45612 5.53980 5.63966 5.79379 6.22188 6.35903 6.48163 6.97056 7.09253 7.72584 8.40127 9.21894 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.019059 B = 0.002627 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.774981 B =10655.454847 C =10907.358533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.059 4.059 3 Si 0.982 3.018 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.074 0.926 9 N -0.610 5.610 10 C 0.142 3.858 11 C -0.103 4.103 12 H 0.098 0.902 13 C -0.103 4.103 14 C -0.110 4.110 15 C -0.108 4.108 16 C 0.168 3.832 17 N -0.675 5.675 18 C 0.596 3.404 19 O -0.553 6.553 20 C -0.041 4.041 21 N -0.429 5.429 22 C 0.006 3.994 23 C -0.257 4.257 24 S 0.266 5.734 25 C -0.039 4.039 26 C -0.107 4.107 27 C -0.041 4.041 28 C 0.144 3.856 29 H 0.251 0.749 30 H -0.021 1.021 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.416 0.584 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.083 0.917 44 H 0.100 0.900 45 H 0.037 0.963 46 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.873 -27.889 -1.524 27.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.252 4.252 3 Si 0.809 3.191 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.369 4.369 8 H 0.092 0.908 9 N -0.334 5.334 10 C 0.017 3.983 11 C -0.123 4.123 12 H 0.116 0.884 13 C -0.141 4.141 14 C -0.147 4.147 15 C -0.147 4.147 16 C 0.080 3.920 17 N -0.326 5.326 18 C 0.379 3.621 19 O -0.430 6.430 20 C -0.315 4.315 21 N -0.147 5.147 22 C -0.130 4.130 23 C -0.380 4.380 24 S 0.523 5.477 25 C -0.079 4.079 26 C -0.146 4.146 27 C -0.080 4.080 28 C 0.016 3.984 29 H 0.061 0.939 30 H -0.003 1.003 31 H 0.125 0.875 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.253 0.747 39 H 0.115 0.885 40 H 0.127 0.873 41 H 0.100 0.900 42 H 0.136 0.864 43 H 0.102 0.898 44 H 0.118 0.882 45 H 0.055 0.945 46 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -0.491 -26.975 -0.886 26.994 hybrid contribution -0.461 1.006 -0.838 1.388 sum -0.952 -25.969 -1.724 26.044 Atomic orbital electron populations 1.69815 1.05953 1.25222 1.58147 1.25563 0.96682 1.00614 1.02297 0.85115 0.77200 0.78704 0.78057 1.20847 1.21326 1.20289 1.19345 0.90756 0.83473 1.43322 0.90791 1.44656 1.02748 1.00054 1.85981 1.21882 0.84580 0.96557 0.95291 1.22947 0.94673 0.96392 0.98293 0.88356 1.22189 1.00744 0.98691 0.92427 1.22401 0.94496 0.99227 0.98609 1.22571 0.98318 1.01258 0.92510 1.21623 0.96508 0.80541 0.93283 1.45656 1.12242 1.14871 1.59868 1.16956 0.84394 0.82340 0.78373 1.90841 1.27192 1.75342 1.49666 1.26967 0.93320 1.01035 1.10188 1.65881 1.27517 1.12341 1.08949 1.22432 0.97263 0.90165 1.03147 1.27633 0.98119 1.06006 1.06220 1.83780 1.10159 1.04009 1.49723 1.21005 1.00791 0.86763 0.99305 1.22400 0.93101 1.00340 0.98740 1.21104 0.95559 0.92315 0.99058 1.21520 0.95565 0.85721 0.95578 0.93940 1.00319 0.87530 0.93623 0.89401 0.90032 0.90335 0.91452 0.92653 0.74684 0.88529 0.87323 0.89953 0.86410 0.89808 0.88219 0.94463 0.98543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.85 10.08 21.65 0.22 -55.64 16 2 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 3 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.24 -14.11 10.34 84.03 0.87 -13.24 16 8 H 0.07 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.61 -33.39 3.39 -695.40 -2.36 -35.75 16 10 C 0.14 7.17 5.59 86.51 0.48 7.66 16 11 C -0.10 -3.93 3.65 -9.44 -0.03 -3.97 16 12 H 0.10 3.21 7.71 -2.39 -0.02 3.20 16 13 C -0.10 -3.52 6.21 31.45 0.20 -3.32 16 14 C -0.11 -3.27 6.88 31.70 0.22 -3.05 16 15 C -0.11 -3.93 5.52 31.75 0.18 -3.75 16 16 C 0.17 6.49 0.92 4.95 0.00 6.50 16 17 N -0.68 -22.79 5.21 -420.23 -2.19 -24.98 16 18 C 0.60 20.76 7.12 86.62 0.62 21.38 16 19 O -0.55 -22.19 14.92 -4.09 -0.06 -22.25 16 20 C -0.04 -1.19 7.44 87.37 0.65 -0.54 16 21 N -0.43 -11.70 10.23 -175.36 -1.79 -13.50 16 22 C 0.01 0.12 7.62 42.30 0.32 0.45 16 23 C -0.26 -4.64 7.17 25.26 0.18 -4.46 16 24 S 0.27 6.07 23.03 -56.49 -1.30 4.77 16 25 C -0.04 -0.34 6.80 30.66 0.21 -0.13 16 26 C -0.11 -0.66 7.11 31.40 0.22 -0.44 16 27 C -0.04 -0.49 6.81 30.92 0.21 -0.28 16 28 C 0.14 6.93 5.30 86.49 0.46 7.39 16 29 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 30 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 31 H 0.11 5.94 4.93 -2.39 -0.01 5.93 16 32 H 0.04 1.88 7.61 -2.39 -0.02 1.86 16 33 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 2.41 6.65 -2.39 -0.02 2.39 16 37 H 0.05 2.29 7.56 -2.38 -0.02 2.27 16 38 H 0.42 12.39 7.95 -92.71 -0.74 11.66 16 39 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.04 1.88 7.55 -2.39 -0.02 1.87 16 46 H 0.00 -0.16 8.08 -2.38 -0.02 -0.18 16 Total: -1.00 -72.79 373.29 0.07 -72.73 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.28 Total: 18.75 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.25 Total: 7.26 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -6.12 Total: -129.86 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.06 Total: -22.25 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -1.30 Total: 4.77 kcal Total: -72.79 0.07 -72.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098943682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.094 kcal (2) G-P(sol) polarization free energy of solvation -72.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds