Wall clock time and date at job start Wed Apr 1 2020 04:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35375 * 116.99720 * 2 1 4 4 C 1.36090 * 125.57621 * 179.71667 * 3 2 1 5 5 C 1.39910 * 107.17838 * 179.90709 * 4 3 2 6 6 C 1.37828 * 106.67128 * 0.35639 * 5 4 3 7 7 C 1.46134 * 126.02675 * 179.76345 * 6 5 4 8 8 O 1.21766 * 120.00122 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99620 * 179.97438 * 7 6 5 10 10 C 1.47067 * 136.06087 * 359.62828 * 9 7 6 11 11 C 1.53751 * 87.88717 * 152.96369 * 10 9 7 12 12 N 1.46499 * 114.57452 * 272.66076 * 11 10 9 13 13 C 1.35316 * 125.86844 * 8.38920 * 12 11 10 14 14 C 1.35343 * 106.17600 * 179.90591 * 13 12 11 15 15 C 1.50703 * 126.75348 * 180.12788 * 14 13 12 16 16 N 1.46504 * 109.47085 * 95.24262 * 15 14 13 17 17 C 1.36938 * 119.99621 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00035 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99785 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00095 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99979 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47444 * 90.00037 * 21 19 17 23 23 H 1.48504 * 109.47272 * 210.00499 * 21 19 17 24 24 H 1.48500 * 109.47304 * 329.99836 * 21 19 17 25 25 N 1.33775 * 106.49729 * 0.35259 * 14 13 12 26 26 N 1.28634 * 108.88272 * 359.77273 * 25 14 13 27 27 C 1.47070 * 136.05415 * 179.97438 * 9 7 6 28 28 O 1.34001 * 125.57901 * 0.03002 * 3 2 1 29 29 H 1.08999 * 109.47144 * 59.99655 * 1 2 3 30 30 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47352 * 299.99631 * 1 2 3 32 32 H 1.08009 * 126.41208 * 0.02562 * 4 3 2 33 33 H 1.08001 * 126.66364 * 180.12858 * 5 4 3 34 34 H 1.09006 * 113.46378 * 267.69852 * 10 9 7 35 35 H 1.08993 * 113.46831 * 38.13086 * 10 9 7 36 36 H 1.09002 * 114.08418 * 139.77975 * 11 10 9 37 37 H 1.08003 * 126.91174 * 0.02562 * 13 12 11 38 38 H 1.08999 * 109.47479 * 215.24366 * 15 14 13 39 39 H 1.09000 * 109.47143 * 335.24836 * 15 14 13 40 40 H 0.96999 * 120.00206 * 0.02562 * 16 15 14 41 41 H 0.97001 * 119.99875 * 179.97438 * 20 19 17 42 42 H 1.09000 * 113.46321 * 321.85958 * 27 9 7 43 43 H 1.08997 * 113.46807 * 92.30426 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3892 1.4092 0.0055 5 6 3.5984 2.7926 0.0011 6 6 2.3521 3.3810 0.0013 7 6 2.0793 4.8167 0.0024 8 8 3.0017 5.6116 0.0037 9 7 0.8068 5.2608 0.0019 10 6 -0.5293 4.6463 -0.0062 11 6 -1.0516 5.9085 0.6996 12 7 -0.9522 5.8747 2.1608 13 6 -0.3135 4.9308 2.8904 14 6 -0.4685 5.2875 4.1868 15 6 0.0640 4.5573 5.3928 16 7 1.3440 5.1462 5.7944 17 6 2.0205 4.6430 6.8734 18 1 1.6103 3.8124 7.4286 19 6 3.2330 5.2013 7.2543 20 7 3.8830 4.7181 8.2917 21 14 3.9421 6.6384 6.2945 22 1 3.4547 7.9133 6.8796 23 1 5.4249 6.5967 6.3640 24 1 3.5105 6.5477 4.8764 25 7 -1.1915 6.4130 4.1873 26 7 -1.4620 6.7346 2.9715 27 6 0.1434 6.5734 0.0031 28 8 1.4264 2.3957 0.0006 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 4.1528 0.6454 0.0102 33 1 4.5514 3.3007 0.0017 34 1 -0.9375 4.5085 -1.0075 35 1 -0.5968 3.7462 0.6046 36 1 -2.0235 6.2483 0.3416 37 1 0.2153 4.0676 2.5139 38 1 -0.6485 4.6427 6.2132 39 1 0.2095 3.5057 5.1458 40 1 1.7122 5.8924 5.2960 41 1 4.7305 5.1080 8.5576 42 1 0.6490 7.3146 0.6220 43 1 -0.0874 6.9440 -0.9956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105345937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:11 Heat of formation + Delta-G solvation = 124.948313 kcal Electronic energy + Delta-G solvation = -30784.418828 eV Core-core repulsion = 26451.616776 eV Total energy + Delta-G solvation = -4332.802053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.33327 -43.07095 -40.74800 -39.02598 -38.27283 -35.18030 -33.66485 -33.39012 -31.87818 -30.80605 -30.33529 -29.31082 -27.57194 -26.90840 -26.11141 -24.47251 -22.75733 -22.41758 -22.31876 -21.20596 -20.81493 -19.84847 -19.07104 -18.10714 -17.92883 -17.50331 -17.21434 -16.60817 -16.38134 -15.90018 -15.74728 -15.25490 -14.80565 -14.52561 -14.30160 -14.11372 -13.88141 -13.59259 -13.40056 -13.35469 -13.31602 -13.02067 -12.86440 -12.69929 -12.64043 -12.14406 -12.02908 -11.72027 -11.58392 -11.10385 -10.84023 -10.68288 -10.59026 -10.36312 -10.12366 -10.01071 -9.55322 -9.45913 -9.04080 -8.86155 -8.44587 -7.20196 -5.72360 -3.08037 0.68631 1.57705 1.75090 2.01097 2.06880 2.15608 2.71430 2.73842 2.84863 3.27149 3.46554 3.51630 3.53603 3.75700 4.15660 4.33426 4.44237 4.53333 4.53565 4.60394 4.63636 4.66365 4.69167 4.88967 4.92811 5.01623 5.06840 5.10694 5.18591 5.30565 5.32903 5.52889 5.55906 5.66986 5.75027 5.95516 6.13227 6.21989 6.53215 6.57334 6.65590 6.70495 6.99788 7.60855 8.01239 8.46291 8.64238 9.24076 9.97130 10.16783 11.45664 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.008195 B = 0.004089 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3415.752015 B = 6846.483509 C = 8029.391474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.259 6.259 3 C 0.220 3.780 4 C -0.237 4.237 5 C -0.068 4.068 6 C -0.106 4.106 7 C 0.643 3.357 8 O -0.506 6.506 9 N -0.648 5.648 10 C 0.102 3.898 11 C 0.105 3.895 12 N -0.284 5.284 13 C -0.034 4.034 14 C -0.009 4.009 15 C 0.238 3.762 16 N -0.749 5.749 17 C -0.244 4.244 18 H 0.093 0.907 19 C 0.010 3.990 20 N -0.932 5.932 21 Si 0.881 3.119 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.279 1.279 25 N -0.249 5.249 26 N -0.088 5.088 27 C 0.103 3.897 28 O -0.190 6.190 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.148 0.852 37 H 0.181 0.819 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.363 0.637 41 H 0.260 0.740 42 H 0.095 0.905 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 -7.769 -27.254 30.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.173 6.173 3 C 0.123 3.877 4 C -0.257 4.257 5 C -0.089 4.089 6 C -0.156 4.156 7 C 0.434 3.566 8 O -0.382 6.382 9 N -0.385 5.385 10 C -0.022 4.022 11 C 0.000 4.000 12 N -0.078 5.078 13 C -0.184 4.184 14 C -0.146 4.146 15 C 0.110 3.890 16 N -0.395 5.395 17 C -0.374 4.374 18 H 0.111 0.889 19 C -0.186 4.186 20 N -0.580 5.580 21 Si 0.711 3.289 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.205 1.205 25 N -0.117 5.117 26 N -0.066 5.066 27 C -0.020 4.020 28 O -0.091 6.091 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.085 0.915 32 H 0.184 0.816 33 H 0.187 0.813 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.165 0.835 37 H 0.198 0.802 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.055 -6.394 -26.918 30.179 hybrid contribution 1.096 -0.069 -0.918 1.432 sum -10.959 -6.463 -27.836 30.606 Atomic orbital electron populations 1.23196 0.76517 1.05244 1.02599 1.86447 1.23233 1.18608 1.88987 1.20811 0.89582 0.78130 0.99201 1.20828 0.92235 0.96887 1.15733 1.22052 0.97810 0.92674 0.96326 1.21544 0.87091 0.86577 1.20360 1.15710 0.80590 0.84223 0.76046 1.90969 1.42609 1.53991 1.50676 1.49412 1.04142 1.10287 1.74649 1.23476 0.80282 0.96779 1.01680 1.22744 1.01754 0.99787 0.75676 1.46736 1.36244 1.17871 1.06961 1.23230 1.04421 0.98903 0.91895 1.22516 1.01118 0.95492 0.95497 1.18908 0.87998 0.93344 0.88787 1.42653 1.20993 1.39970 1.35904 1.19019 1.01138 1.13654 1.03563 0.88889 1.24596 0.97311 0.99006 0.97685 1.69695 1.16925 1.43744 1.27656 0.86599 0.78489 0.83811 0.79987 1.20906 1.21596 1.20528 1.75123 1.13779 1.12460 1.10291 1.78298 1.18929 1.14643 0.94766 1.23425 0.88919 0.88003 1.01677 1.83926 1.37615 1.14247 1.73319 0.91927 0.86993 0.91542 0.81588 0.81300 0.86409 0.88710 0.83479 0.80220 0.93344 0.93861 0.80468 0.93026 0.88702 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 10.74 101.05 1.09 1.17 16 2 O -0.26 -2.21 10.55 -41.05 -0.43 -2.64 16 3 C 0.22 2.20 7.86 29.96 0.24 2.43 16 4 C -0.24 -2.42 10.89 -39.73 -0.43 -2.85 16 5 C -0.07 -0.78 10.66 -39.11 -0.42 -1.20 16 6 C -0.11 -1.27 7.12 -36.57 -0.26 -1.53 16 7 C 0.64 8.59 8.02 -13.09 -0.10 8.49 16 8 O -0.51 -8.69 17.64 5.13 0.09 -8.60 16 9 N -0.65 -6.35 3.43 -186.85 -0.64 -6.99 16 10 C 0.10 0.57 7.00 -8.37 -0.06 0.51 16 11 C 0.10 0.74 5.36 -67.69 -0.36 0.37 16 12 N -0.28 -3.64 3.56 -54.46 -0.19 -3.83 16 13 C -0.03 -0.51 10.40 -17.05 -0.18 -0.69 16 14 C -0.01 -0.16 6.62 -82.78 -0.55 -0.71 16 15 C 0.24 4.94 6.82 -5.19 -0.04 4.91 16 16 N -0.75 -19.16 5.40 -61.08 -0.33 -19.49 16 17 C -0.24 -7.17 10.47 -15.06 -0.16 -7.33 16 18 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 19 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 20 N -0.93 -30.04 13.97 55.49 0.78 -29.26 16 21 Si 0.88 23.80 27.73 -169.99 -4.71 19.09 16 22 H -0.28 -7.62 7.11 56.52 0.40 -7.22 16 23 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 24 H -0.28 -7.41 6.52 56.52 0.37 -7.04 16 25 N -0.25 -4.82 12.41 33.29 0.41 -4.41 16 26 N -0.09 -1.43 13.16 60.35 0.79 -0.64 16 27 C 0.10 0.80 8.42 -8.52 -0.07 0.73 16 28 O -0.19 -1.90 8.72 -19.24 -0.17 -2.07 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.17 1.36 8.06 -52.48 -0.42 0.93 16 33 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.09 0.57 6.35 -51.93 -0.33 0.24 16 36 H 0.15 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.18 2.35 7.22 -52.48 -0.38 1.97 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.36 9.52 5.52 -40.82 -0.23 9.29 16 41 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -40.00 378.04 -5.29 -45.29 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.18 Total: 3.34 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -1.40 Total: 4.52 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: 0.82 Total: -64.62 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.51 Total: -13.31 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -4.71 Total: 19.09 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -40.00 -5.29 -45.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105345937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.239 kcal (2) G-P(sol) polarization free energy of solvation -40.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds