Wall clock time and date at job start Wed Apr 1 2020 04:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35375 * 116.99720 * 2 1 4 4 C 1.36090 * 125.57621 * 179.71667 * 3 2 1 5 5 C 1.39910 * 107.17838 * 179.90709 * 4 3 2 6 6 C 1.37828 * 106.67128 * 0.35639 * 5 4 3 7 7 C 1.46134 * 126.02675 * 179.76345 * 6 5 4 8 8 O 1.21766 * 120.00122 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99620 * 179.97438 * 7 6 5 10 10 C 1.47067 * 136.06087 * 359.62828 * 9 7 6 11 11 C 1.53751 * 87.88717 * 152.96369 * 10 9 7 12 12 N 1.46499 * 114.57452 * 272.66076 * 11 10 9 13 13 C 1.35316 * 125.86844 * 8.38920 * 12 11 10 14 14 C 1.35343 * 106.17600 * 179.90591 * 13 12 11 15 15 C 1.50703 * 126.75348 * 180.12788 * 14 13 12 16 16 N 1.46504 * 109.47085 * 95.24262 * 15 14 13 17 17 C 1.36938 * 119.99621 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00035 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99785 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00095 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99979 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47444 * 90.00037 * 21 19 17 23 23 H 1.48504 * 109.47272 * 210.00499 * 21 19 17 24 24 H 1.48500 * 109.47304 * 329.99836 * 21 19 17 25 25 N 1.33775 * 106.49729 * 0.35259 * 14 13 12 26 26 N 1.28634 * 108.88272 * 359.77273 * 25 14 13 27 27 C 1.47070 * 136.05415 * 179.97438 * 9 7 6 28 28 O 1.34001 * 125.57901 * 0.03002 * 3 2 1 29 29 H 1.08999 * 109.47144 * 59.99655 * 1 2 3 30 30 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47352 * 299.99631 * 1 2 3 32 32 H 1.08009 * 126.41208 * 0.02562 * 4 3 2 33 33 H 1.08001 * 126.66364 * 180.12858 * 5 4 3 34 34 H 1.09006 * 113.46378 * 267.69852 * 10 9 7 35 35 H 1.08993 * 113.46831 * 38.13086 * 10 9 7 36 36 H 1.09002 * 114.08418 * 139.77975 * 11 10 9 37 37 H 1.08003 * 126.91174 * 0.02562 * 13 12 11 38 38 H 1.08999 * 109.47479 * 215.24366 * 15 14 13 39 39 H 1.09000 * 109.47143 * 335.24836 * 15 14 13 40 40 H 0.96999 * 120.00206 * 0.02562 * 16 15 14 41 41 H 0.97001 * 119.99875 * 179.97438 * 20 19 17 42 42 H 1.09000 * 113.46321 * 321.85958 * 27 9 7 43 43 H 1.08997 * 113.46807 * 92.30426 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3892 1.4092 0.0055 5 6 3.5984 2.7926 0.0011 6 6 2.3521 3.3810 0.0013 7 6 2.0793 4.8167 0.0024 8 8 3.0017 5.6116 0.0037 9 7 0.8068 5.2608 0.0019 10 6 -0.5293 4.6463 -0.0062 11 6 -1.0516 5.9085 0.6996 12 7 -0.9522 5.8747 2.1608 13 6 -0.3135 4.9308 2.8904 14 6 -0.4685 5.2875 4.1868 15 6 0.0640 4.5573 5.3928 16 7 1.3440 5.1462 5.7944 17 6 2.0205 4.6430 6.8734 18 1 1.6103 3.8124 7.4286 19 6 3.2330 5.2013 7.2543 20 7 3.8830 4.7181 8.2917 21 14 3.9421 6.6384 6.2945 22 1 3.4547 7.9133 6.8796 23 1 5.4249 6.5967 6.3640 24 1 3.5105 6.5477 4.8764 25 7 -1.1915 6.4130 4.1873 26 7 -1.4620 6.7346 2.9715 27 6 0.1434 6.5734 0.0031 28 8 1.4264 2.3957 0.0006 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 4.1528 0.6454 0.0102 33 1 4.5514 3.3007 0.0017 34 1 -0.9375 4.5085 -1.0075 35 1 -0.5968 3.7462 0.6046 36 1 -2.0235 6.2483 0.3416 37 1 0.2153 4.0676 2.5139 38 1 -0.6485 4.6427 6.2132 39 1 0.2095 3.5057 5.1458 40 1 1.7122 5.8924 5.2960 41 1 4.7305 5.1080 8.5576 42 1 0.6490 7.3146 0.6220 43 1 -0.0874 6.9440 -0.9956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105345937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:10 Heat of formation + Delta-G solvation = 93.971444 kcal Electronic energy + Delta-G solvation = -30785.762086 eV Core-core repulsion = 26451.616776 eV Total energy + Delta-G solvation = -4334.145310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.48086 -43.86239 -41.52364 -39.67434 -39.17667 -37.05406 -34.79590 -34.34383 -33.74923 -32.06784 -31.65796 -30.00736 -28.13125 -28.08461 -27.21566 -25.42008 -24.41137 -23.60652 -23.09741 -22.50134 -21.85398 -20.71667 -19.97446 -19.68960 -18.79851 -18.36030 -18.12572 -17.51375 -17.45699 -16.78356 -16.57527 -16.33819 -16.14475 -15.90495 -15.76566 -15.13770 -14.99219 -14.80020 -14.46998 -14.38964 -14.15083 -14.06310 -14.01839 -13.83338 -13.66276 -13.24507 -13.01200 -12.98312 -12.74416 -12.50893 -12.37900 -12.22689 -11.98809 -11.87873 -11.59355 -11.17739 -11.13199 -11.07345 -10.39602 -10.17363 -9.37902 -9.20577 -8.08159 -5.40785 -0.15974 0.42590 0.96954 1.17428 1.23589 1.29187 1.31454 1.34005 1.38500 1.47464 1.93808 2.15213 2.40752 2.64346 3.04956 3.22809 3.33458 3.54228 3.67153 3.70374 3.80092 3.90995 4.03442 4.13498 4.20802 4.27138 4.29698 4.32216 4.39494 4.46036 4.47160 4.48929 4.57212 4.69151 4.74304 4.80644 4.99811 5.05126 5.16399 5.37904 5.56073 5.69827 6.03590 6.15933 6.22159 6.71850 6.99348 7.37956 7.74492 7.93535 9.13052 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.008195 B = 0.004089 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3415.752015 B = 6846.483509 C = 8029.391474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.266 6.266 3 C 0.226 3.774 4 C -0.249 4.249 5 C -0.081 4.081 6 C -0.123 4.123 7 C 0.636 3.364 8 O -0.563 6.563 9 N -0.655 5.655 10 C 0.110 3.890 11 C 0.096 3.904 12 N -0.267 5.267 13 C -0.016 4.016 14 C -0.037 4.037 15 C 0.239 3.761 16 N -0.755 5.755 17 C -0.230 4.230 18 H 0.073 0.927 19 C -0.049 4.049 20 N -0.975 5.975 21 Si 0.941 3.059 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 N -0.291 5.291 26 N -0.091 5.091 27 C 0.101 3.899 28 O -0.178 6.178 29 H 0.079 0.921 30 H 0.135 0.865 31 H 0.067 0.933 32 H 0.182 0.818 33 H 0.167 0.833 34 H 0.171 0.829 35 H 0.095 0.905 36 H 0.197 0.803 37 H 0.199 0.801 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.359 0.641 41 H 0.260 0.740 42 H 0.059 0.941 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.076 -8.332 -30.582 34.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.180 6.180 3 C 0.128 3.872 4 C -0.269 4.269 5 C -0.102 4.102 6 C -0.173 4.173 7 C 0.428 3.572 8 O -0.444 6.444 9 N -0.390 5.390 10 C -0.012 4.012 11 C -0.005 4.005 12 N -0.061 5.061 13 C -0.168 4.168 14 C -0.175 4.175 15 C 0.111 3.889 16 N -0.400 5.400 17 C -0.361 4.361 18 H 0.091 0.909 19 C -0.241 4.241 20 N -0.625 5.625 21 Si 0.770 3.230 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.200 1.200 25 N -0.158 5.158 26 N -0.069 5.069 27 C -0.021 4.021 28 O -0.078 6.078 29 H 0.097 0.903 30 H 0.153 0.847 31 H 0.086 0.914 32 H 0.199 0.801 33 H 0.184 0.816 34 H 0.189 0.811 35 H 0.113 0.887 36 H 0.214 0.786 37 H 0.216 0.784 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.191 0.809 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.455 -6.960 -30.293 34.279 hybrid contribution 1.627 -0.017 0.012 1.627 sum -12.828 -6.977 -30.281 33.618 Atomic orbital electron populations 1.23555 0.74401 1.07144 1.03461 1.86470 1.25421 1.17531 1.88551 1.20975 0.89767 0.78522 0.97929 1.21053 0.93136 0.96645 1.16020 1.22239 0.98012 0.93566 0.96353 1.21400 0.87523 0.86634 1.21726 1.15870 0.81256 0.84290 0.75810 1.90924 1.44556 1.55280 1.53643 1.49596 1.04418 1.12114 1.72885 1.23893 0.77384 0.95693 1.04188 1.23440 1.03824 1.01112 0.72122 1.47173 1.33923 1.16030 1.09002 1.23323 1.03274 0.99259 0.90896 1.22187 1.03039 0.96306 0.96017 1.18924 0.85701 0.94315 0.89930 1.42721 1.22450 1.39931 1.34895 1.19062 1.00897 1.12356 1.03749 0.90945 1.25239 0.98129 1.01798 0.98930 1.69825 1.17584 1.45573 1.29550 0.85624 0.77706 0.80802 0.78830 1.20727 1.21355 1.20003 1.75064 1.15270 1.13356 1.12120 1.78169 1.19239 1.15149 0.94389 1.23751 0.88108 0.86602 1.03660 1.83892 1.36852 1.13911 1.73190 0.90275 0.84726 0.91418 0.80112 0.81571 0.81141 0.88665 0.78609 0.78395 0.94029 0.91988 0.80878 0.93134 0.92197 0.81832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 10.74 113.37 1.22 1.27 16 2 O -0.27 -3.89 10.55 -64.45 -0.68 -4.57 16 3 C 0.23 4.09 7.86 67.32 0.53 4.62 16 4 C -0.25 -4.86 10.89 22.18 0.24 -4.62 16 5 C -0.08 -1.87 10.66 22.58 0.24 -1.63 16 6 C -0.12 -2.84 7.12 24.22 0.17 -2.67 16 7 C 0.64 16.50 8.02 86.29 0.69 17.20 16 8 O -0.56 -19.79 17.64 -4.56 -0.08 -19.87 16 9 N -0.66 -11.02 3.43 -863.24 -2.96 -13.98 16 10 C 0.11 0.69 7.00 83.27 0.58 1.27 16 11 C 0.10 0.91 5.36 45.54 0.24 1.16 16 12 N -0.27 -6.08 3.56 -326.20 -1.16 -7.24 16 13 C -0.02 -0.44 10.40 83.49 0.87 0.43 16 14 C -0.04 -1.35 6.62 41.60 0.28 -1.08 16 15 C 0.24 9.86 6.82 85.63 0.58 10.44 16 16 N -0.75 -38.71 5.40 -347.17 -1.87 -40.58 16 17 C -0.23 -13.70 10.47 84.03 0.88 -12.82 16 18 H 0.07 4.55 8.06 -2.91 -0.02 4.52 16 19 C -0.05 -3.00 5.50 84.86 0.47 -2.54 16 20 N -0.97 -64.07 13.97 21.65 0.30 -63.76 16 21 Si 0.94 50.02 27.73 68.60 1.90 51.92 16 22 H -0.28 -14.73 7.11 99.48 0.71 -14.03 16 23 H -0.29 -15.04 7.11 99.48 0.71 -14.34 16 24 H -0.27 -14.18 6.52 99.48 0.65 -13.53 16 25 N -0.29 -11.09 12.41 -48.60 -0.60 -11.69 16 26 N -0.09 -2.79 13.16 37.02 0.49 -2.30 16 27 C 0.10 1.23 8.42 83.17 0.70 1.93 16 28 O -0.18 -3.16 8.72 13.58 0.12 -3.04 16 29 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.17 3.75 8.06 -2.91 -0.02 3.72 16 34 H 0.17 -0.55 8.14 -2.38 -0.02 -0.57 16 35 H 0.10 0.68 6.35 -2.39 -0.02 0.67 16 36 H 0.20 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.20 4.65 7.22 -2.91 -0.02 4.63 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.36 18.79 5.52 -92.71 -0.51 18.28 16 41 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.16 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -91.53 378.04 3.65 -87.89 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.50 Total: 14.27 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 7.69 Total: 12.95 kcal Atomic # 7 Polarization: -133.75 SS G_CDS: -5.81 Total: -139.56 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.64 Total: -27.48 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 1.90 Total: 51.92 kcal Total: -91.53 3.65 -87.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105345937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.858 kcal (2) G-P(sol) polarization free energy of solvation -91.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds