Wall clock time and date at job start Wed Apr 1 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99761 * 2 1 4 4 H 1.48498 * 109.47131 * 270.00060 * 3 2 1 5 5 H 1.48499 * 109.47152 * 30.00244 * 3 2 1 6 6 H 1.48500 * 109.46889 * 149.99956 * 3 2 1 7 7 C 1.38809 * 120.00572 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00386 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99530 * 359.97438 * 7 2 1 10 10 C 1.47577 * 134.49022 * 179.97438 * 9 7 2 11 11 C 1.53945 * 86.11860 * 155.36438 * 10 9 7 12 12 N 1.46499 * 113.74664 * 137.95471 * 11 10 9 13 13 C 1.46761 * 124.35321 * 119.95077 * 12 11 10 14 14 C 1.54477 * 105.47577 * 197.03814 * 13 12 11 15 15 H 1.09002 * 111.00292 * 92.71686 * 14 13 12 16 16 N 1.46501 * 110.96986 * 216.46711 * 14 13 12 17 17 C 1.34776 * 119.99723 * 198.83333 * 16 14 13 18 18 O 1.21280 * 119.99984 * 359.97438 * 17 16 14 19 19 C 1.50700 * 120.00031 * 179.97438 * 17 16 14 20 20 O 1.42893 * 109.47425 * 179.97438 * 19 17 16 21 21 C 1.42905 * 114.00274 * 180.02562 * 20 19 17 22 22 C 1.52997 * 109.47264 * 179.97438 * 21 20 19 23 23 F 1.39904 * 109.46820 * 59.99936 * 22 21 20 24 24 F 1.39901 * 109.47234 * 300.00340 * 22 21 20 25 25 C 1.54635 * 101.76401 * 334.58657 * 14 13 12 26 26 C 1.34418 * 124.34488 * 299.97855 * 12 11 10 27 27 O 1.21282 * 124.94836 * 359.60104 * 26 12 11 28 28 C 1.47584 * 134.49580 * 0.02562 * 9 7 2 29 29 H 0.97005 * 120.00287 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.77039 * 41.06272 * 10 9 7 31 31 H 1.09001 * 113.77645 * 269.66229 * 10 9 7 32 32 H 1.09004 * 113.74290 * 269.15827 * 11 10 9 33 33 H 1.09004 * 110.24421 * 78.03454 * 13 12 11 34 34 H 1.09000 * 110.24285 * 316.04050 * 13 12 11 35 35 H 0.96998 * 119.99866 * 18.83151 * 16 14 13 36 36 H 1.09003 * 109.47015 * 59.99589 * 19 17 16 37 37 H 1.09002 * 109.47065 * 300.00077 * 19 17 16 38 38 H 1.08998 * 109.46610 * 59.99541 * 21 20 19 39 39 H 1.08996 * 109.46641 * 300.00506 * 21 20 19 40 40 H 1.09002 * 109.47153 * 179.97438 * 22 21 20 41 41 H 1.08995 * 110.48883 * 143.47672 * 25 14 13 42 42 H 1.09001 * 110.48250 * 266.12149 * 25 14 13 43 43 H 1.08995 * 113.76790 * 90.33191 * 28 9 7 44 44 H 1.09006 * 113.76151 * 318.93685 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0016 10 6 1.7203 -3.8100 0.0019 11 6 0.3477 -4.0827 0.6434 12 7 -0.3330 -5.2613 0.1015 13 6 -0.7238 -6.4308 0.8974 14 6 -0.9894 -7.5564 -0.1268 15 1 -0.0936 -8.1557 -0.2896 16 7 -2.1102 -8.3985 0.2985 17 6 -2.2660 -9.6293 -0.2281 18 8 -1.4786 -10.0394 -1.0544 19 6 -3.4186 -10.4958 0.2097 20 8 -3.3682 -11.7429 -0.4862 21 6 -4.4234 -12.6433 -0.1426 22 6 -4.2704 -13.9377 -0.9438 23 9 -3.0377 -14.5281 -0.6451 24 9 -4.3302 -13.6494 -2.3115 25 6 -1.3533 -6.7495 -1.3947 26 6 -0.6794 -5.4108 -1.1886 27 8 -0.4802 -4.5919 -2.0608 28 6 -0.1032 -2.7574 0.0019 29 1 -0.4851 0.8401 0.0004 30 1 2.5630 -4.0319 0.6566 31 1 1.8314 -4.2355 -0.9954 32 1 0.3608 -4.0631 1.7331 33 1 -1.6294 -6.2156 1.4646 34 1 0.0847 -6.7163 1.5704 35 1 -2.7401 -8.0703 0.9591 36 1 -4.3583 -9.9918 -0.0161 37 1 -3.3512 -10.6751 1.2827 38 1 -5.3837 -12.1834 -0.3757 39 1 -4.3770 -12.8674 0.9231 40 1 -5.0750 -14.6247 -0.6814 41 1 -0.9614 -7.2408 -2.2852 42 1 -2.4336 -6.6251 -1.4706 43 1 -0.5271 -2.8739 -0.9955 44 1 -0.7167 -2.1385 0.6567 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108558588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:04 Heat of formation + Delta-G solvation = -137.893746 kcal Electronic energy + Delta-G solvation = -29966.795373 eV Core-core repulsion = 25171.906447 eV Total energy + Delta-G solvation = -4794.888926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.31358 -47.35215 -40.80988 -39.82742 -38.20334 -37.22343 -36.37829 -34.21122 -32.23937 -31.26340 -30.38521 -28.24733 -27.51992 -26.70330 -24.72337 -23.51599 -23.41378 -22.11883 -21.08098 -20.39243 -18.41311 -18.35737 -18.04468 -17.95343 -17.09919 -16.76037 -16.66902 -16.60286 -16.30453 -16.23388 -15.34394 -14.94080 -14.76713 -14.63186 -14.18588 -14.04537 -13.91862 -13.70405 -13.60697 -13.52649 -13.38450 -13.28428 -12.82823 -12.53401 -12.42586 -12.07176 -11.84912 -11.59674 -11.49369 -11.40319 -11.17744 -10.85192 -10.69808 -10.50803 -10.27758 -10.14031 -9.98647 -9.72595 -9.49149 -9.18143 -8.65163 -8.20018 -6.80893 -5.71955 -3.03855 2.11411 2.19554 2.91369 3.01801 3.26929 3.42807 3.43899 3.48247 3.49094 3.65718 3.90477 4.10415 4.27546 4.40926 4.45410 4.50923 4.51866 4.57247 4.58894 4.78387 4.83077 4.86168 5.23544 5.33102 5.34571 5.53914 5.61997 5.64745 5.70114 5.84959 6.02335 6.20230 6.29545 6.52018 6.58030 6.86952 7.02830 7.29422 7.47782 7.59125 7.64606 7.80760 8.01930 8.54384 9.09131 9.75098 10.64192 11.45292 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.043607 B = 0.001617 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.950885 B =17309.654222 C =17366.889452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.220 4.220 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.111 3.889 11 C 0.098 3.902 12 N -0.606 5.606 13 C 0.100 3.900 14 C 0.137 3.863 15 H 0.112 0.888 16 N -0.719 5.719 17 C 0.515 3.485 18 O -0.507 6.507 19 C 0.045 3.955 20 O -0.351 6.351 21 C 0.007 3.993 22 C 0.272 3.728 23 F -0.198 7.198 24 F -0.197 7.197 25 C -0.167 4.167 26 C 0.515 3.485 27 O -0.506 6.506 28 C 0.151 3.849 29 H 0.253 0.747 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.404 0.596 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.059 0.941 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.699 -28.813 7.208 33.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.348 4.348 8 H 0.098 0.902 9 N -0.331 5.331 10 C -0.016 4.016 11 C -0.004 4.004 12 N -0.342 5.342 13 C -0.025 4.025 14 C 0.032 3.968 15 H 0.130 0.870 16 N -0.374 5.374 17 C 0.300 3.700 18 O -0.380 6.380 19 C -0.035 4.035 20 O -0.269 6.269 21 C -0.071 4.071 22 C 0.219 3.781 23 F -0.179 7.179 24 F -0.179 7.179 25 C -0.209 4.209 26 C 0.301 3.699 27 O -0.380 6.380 28 C 0.026 3.974 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.124 0.876 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.239 0.761 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.077 0.923 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.750 -28.300 6.002 32.031 hybrid contribution -0.085 1.085 0.450 1.178 sum -13.835 -27.215 6.452 31.204 Atomic orbital electron populations 1.69829 1.05029 1.25275 1.56534 1.24799 0.95689 0.97546 1.02434 0.86098 0.78552 0.83357 0.77616 1.21595 1.21650 1.20607 1.18995 0.90216 0.81716 1.43855 0.90172 1.45670 1.02470 0.99151 1.85799 1.22934 0.94253 0.86909 0.97546 1.24106 0.94276 0.83699 0.98361 1.48501 1.58941 1.18072 1.08655 1.22179 1.01383 0.85065 0.93847 1.21812 0.90408 0.90983 0.93610 0.87030 1.45782 1.30376 1.15665 1.45573 1.20137 0.86354 0.81602 0.81913 1.90799 1.43810 1.72257 1.31180 1.22256 0.98003 0.85861 0.97410 1.88108 1.48292 1.25302 1.65180 1.23782 0.92823 0.90415 1.00109 1.21983 0.85012 0.93367 0.77770 1.93033 1.46919 1.85157 1.92834 1.93036 1.96582 1.94558 1.33704 1.22838 1.03043 0.94918 1.00101 1.20598 0.78692 0.88068 0.82519 1.90791 1.54684 1.46913 1.45597 1.22798 0.88357 0.87125 0.99158 0.93673 0.93894 0.94302 0.87630 0.90856 0.89574 0.76110 0.89616 0.89635 0.89797 0.89815 0.85694 0.87725 0.87805 0.92321 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.17 11.38 55.49 0.63 -27.54 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -6.43 10.70 -15.06 -0.16 -6.59 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 N -0.60 -16.35 3.70 -178.07 -0.66 -17.01 16 10 C 0.11 2.42 8.45 -2.98 -0.03 2.40 16 11 C 0.10 1.85 4.82 -70.13 -0.34 1.51 16 12 N -0.61 -9.13 3.15 -166.62 -0.53 -9.66 16 13 C 0.10 0.93 7.07 -3.13 -0.02 0.90 16 14 C 0.14 1.26 3.43 -66.30 -0.23 1.04 16 15 H 0.11 1.16 7.73 -51.93 -0.40 0.76 16 16 N -0.72 -4.64 5.18 -52.22 -0.27 -4.91 16 17 C 0.52 4.59 7.90 -10.99 -0.09 4.50 16 18 O -0.51 -7.28 16.24 -14.35 -0.23 -7.51 16 19 C 0.04 0.23 6.42 36.01 0.23 0.46 16 20 O -0.35 -3.02 9.76 -55.14 -0.54 -3.55 16 21 C 0.01 0.03 6.16 37.16 0.23 0.26 16 22 C 0.27 1.40 5.63 37.16 0.21 1.61 16 23 F -0.20 -1.72 17.28 2.25 0.04 -1.68 16 24 F -0.20 -1.75 17.28 2.25 0.04 -1.71 16 25 C -0.17 -2.01 6.59 -26.74 -0.18 -2.19 16 26 C 0.52 8.72 7.44 -10.86 -0.08 8.64 16 27 O -0.51 -11.36 14.64 5.56 0.08 -11.28 16 28 C 0.15 3.77 6.89 -2.96 -0.02 3.75 16 29 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.91 7.41 -51.93 -0.38 0.52 16 32 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 33 H 0.07 0.52 7.77 -51.93 -0.40 0.11 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.40 1.18 8.37 -40.82 -0.34 0.84 16 36 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 37 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 38 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 40 H 0.13 0.04 8.14 -51.93 -0.42 -0.38 16 41 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 43 H 0.06 1.62 5.57 -51.93 -0.29 1.33 16 44 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 LS Contribution 377.99 15.07 5.70 5.70 Total: -1.00 -41.91 377.99 -7.29 -49.20 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -5.96 Total: -3.71 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: -0.56 Total: 15.96 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.82 Total: -59.12 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.69 Total: -22.35 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.08 Total: -3.39 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -41.91 -7.29 -49.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108558588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.698 kcal (2) G-P(sol) polarization free energy of solvation -41.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds