Wall clock time and date at job start Wed Apr 1 2020 05:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99761 * 2 1 4 4 H 1.48498 * 109.47131 * 270.00060 * 3 2 1 5 5 H 1.48499 * 109.47152 * 30.00244 * 3 2 1 6 6 H 1.48500 * 109.46889 * 149.99956 * 3 2 1 7 7 C 1.38809 * 120.00572 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00386 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99530 * 359.97438 * 7 2 1 10 10 C 1.47577 * 134.49022 * 179.97438 * 9 7 2 11 11 C 1.53945 * 86.11860 * 155.36438 * 10 9 7 12 12 N 1.46499 * 113.74664 * 137.95471 * 11 10 9 13 13 C 1.46761 * 124.35321 * 119.95077 * 12 11 10 14 14 C 1.54477 * 105.47577 * 197.03814 * 13 12 11 15 15 H 1.09002 * 111.00292 * 92.71686 * 14 13 12 16 16 N 1.46501 * 110.96986 * 216.46711 * 14 13 12 17 17 C 1.34776 * 119.99723 * 198.83333 * 16 14 13 18 18 O 1.21280 * 119.99984 * 359.97438 * 17 16 14 19 19 C 1.50700 * 120.00031 * 179.97438 * 17 16 14 20 20 O 1.42893 * 109.47425 * 179.97438 * 19 17 16 21 21 C 1.42905 * 114.00274 * 180.02562 * 20 19 17 22 22 C 1.52997 * 109.47264 * 179.97438 * 21 20 19 23 23 F 1.39904 * 109.46820 * 59.99936 * 22 21 20 24 24 F 1.39901 * 109.47234 * 300.00340 * 22 21 20 25 25 C 1.54635 * 101.76401 * 334.58657 * 14 13 12 26 26 C 1.34418 * 124.34488 * 299.97855 * 12 11 10 27 27 O 1.21282 * 124.94836 * 359.60104 * 26 12 11 28 28 C 1.47584 * 134.49580 * 0.02562 * 9 7 2 29 29 H 0.97005 * 120.00287 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.77039 * 41.06272 * 10 9 7 31 31 H 1.09001 * 113.77645 * 269.66229 * 10 9 7 32 32 H 1.09004 * 113.74290 * 269.15827 * 11 10 9 33 33 H 1.09004 * 110.24421 * 78.03454 * 13 12 11 34 34 H 1.09000 * 110.24285 * 316.04050 * 13 12 11 35 35 H 0.96998 * 119.99866 * 18.83151 * 16 14 13 36 36 H 1.09003 * 109.47015 * 59.99589 * 19 17 16 37 37 H 1.09002 * 109.47065 * 300.00077 * 19 17 16 38 38 H 1.08998 * 109.46610 * 59.99541 * 21 20 19 39 39 H 1.08996 * 109.46641 * 300.00506 * 21 20 19 40 40 H 1.09002 * 109.47153 * 179.97438 * 22 21 20 41 41 H 1.08995 * 110.48883 * 143.47672 * 25 14 13 42 42 H 1.09001 * 110.48250 * 266.12149 * 25 14 13 43 43 H 1.08995 * 113.76790 * 90.33191 * 28 9 7 44 44 H 1.09006 * 113.76151 * 318.93685 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0016 10 6 1.7203 -3.8100 0.0019 11 6 0.3477 -4.0827 0.6434 12 7 -0.3330 -5.2613 0.1015 13 6 -0.7238 -6.4308 0.8974 14 6 -0.9894 -7.5564 -0.1268 15 1 -0.0936 -8.1557 -0.2896 16 7 -2.1102 -8.3985 0.2985 17 6 -2.2660 -9.6293 -0.2281 18 8 -1.4786 -10.0394 -1.0544 19 6 -3.4186 -10.4958 0.2097 20 8 -3.3682 -11.7429 -0.4862 21 6 -4.4234 -12.6433 -0.1426 22 6 -4.2704 -13.9377 -0.9438 23 9 -3.0377 -14.5281 -0.6451 24 9 -4.3302 -13.6494 -2.3115 25 6 -1.3533 -6.7495 -1.3947 26 6 -0.6794 -5.4108 -1.1886 27 8 -0.4802 -4.5919 -2.0608 28 6 -0.1032 -2.7574 0.0019 29 1 -0.4851 0.8401 0.0004 30 1 2.5630 -4.0319 0.6566 31 1 1.8314 -4.2355 -0.9954 32 1 0.3608 -4.0631 1.7331 33 1 -1.6294 -6.2156 1.4646 34 1 0.0847 -6.7163 1.5704 35 1 -2.7401 -8.0703 0.9591 36 1 -4.3583 -9.9918 -0.0161 37 1 -3.3512 -10.6751 1.2827 38 1 -5.3837 -12.1834 -0.3757 39 1 -4.3770 -12.8674 0.9231 40 1 -5.0750 -14.6247 -0.6814 41 1 -0.9614 -7.2408 -2.2852 42 1 -2.4336 -6.6251 -1.4706 43 1 -0.5271 -2.8739 -0.9955 44 1 -0.7167 -2.1385 0.6567 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108558588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:03 Heat of formation + Delta-G solvation = -171.472219 kcal Electronic energy + Delta-G solvation = -29968.251445 eV Core-core repulsion = 25171.906447 eV Total energy + Delta-G solvation = -4796.344998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.78899 -47.86605 -41.92251 -40.70588 -39.05601 -38.57461 -37.56750 -35.27939 -34.18202 -32.06662 -31.17844 -29.28232 -28.93440 -27.64266 -26.61316 -25.22840 -23.80320 -22.96205 -22.14174 -21.72528 -19.80108 -18.82501 -18.79145 -18.58512 -18.37642 -17.86761 -17.66723 -17.20095 -17.05895 -17.02481 -16.78853 -16.25712 -15.84204 -15.67990 -15.48268 -15.16283 -14.90915 -14.74482 -14.60669 -14.49158 -14.24294 -14.04926 -13.85702 -13.62826 -13.42607 -13.28889 -13.15665 -12.94879 -12.84558 -12.75143 -12.57573 -12.26610 -12.02534 -11.91688 -11.79967 -11.52015 -11.13495 -10.91988 -10.81188 -10.65499 -10.13994 -9.58383 -8.94694 -7.93311 -5.28013 1.42712 1.46390 1.53423 1.54991 1.58754 1.61964 2.02498 2.47967 2.72003 3.08606 3.25020 3.31900 3.45254 3.47061 3.49541 3.65977 3.73970 3.77883 3.94703 4.01963 4.17604 4.24734 4.28636 4.36054 4.40277 4.52059 4.56820 4.60785 4.65059 4.75500 4.82016 4.88066 4.91370 5.20507 5.22547 5.37573 5.47559 5.84281 5.89194 5.91291 6.23713 6.54823 6.88139 7.20632 7.25057 7.56588 8.52134 9.23893 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.043607 B = 0.001617 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.950885 B =17309.654222 C =17366.889452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.985 3.015 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.239 4.239 8 H 0.085 0.915 9 N -0.635 5.635 10 C 0.110 3.890 11 C 0.138 3.862 12 N -0.605 5.605 13 C 0.102 3.898 14 C 0.151 3.849 15 H 0.101 0.899 16 N -0.697 5.697 17 C 0.510 3.490 18 O -0.572 6.572 19 C 0.046 3.954 20 O -0.402 6.402 21 C 0.003 3.997 22 C 0.253 3.747 23 F -0.224 7.224 24 F -0.225 7.225 25 C -0.155 4.155 26 C 0.503 3.497 27 O -0.574 6.574 28 C 0.146 3.854 29 H 0.249 0.751 30 H 0.070 0.930 31 H 0.019 0.981 32 H 0.142 0.858 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.426 0.574 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.177 0.823 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.024 0.976 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.946 -30.530 10.356 35.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.812 3.188 4 H -0.219 1.219 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.367 4.367 8 H 0.103 0.897 9 N -0.361 5.361 10 C -0.017 4.017 11 C 0.034 3.966 12 N -0.338 5.338 13 C -0.021 4.021 14 C 0.045 3.955 15 H 0.119 0.881 16 N -0.353 5.353 17 C 0.298 3.702 18 O -0.450 6.450 19 C -0.032 4.032 20 O -0.321 6.321 21 C -0.073 4.073 22 C 0.200 3.800 23 F -0.206 7.206 24 F -0.207 7.207 25 C -0.197 4.197 26 C 0.292 3.708 27 O -0.453 6.453 28 C 0.020 3.980 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.159 0.841 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.266 0.734 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.193 0.807 41 H 0.111 0.889 42 H 0.140 0.860 43 H 0.042 0.958 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.033 -30.081 9.235 34.873 hybrid contribution 0.261 1.532 -0.565 1.653 sum -14.772 -28.549 8.670 33.293 Atomic orbital electron populations 1.70037 1.06623 1.25713 1.57832 1.25730 0.96647 1.01154 1.02601 0.84993 0.77884 0.78614 0.77295 1.21906 1.21481 1.18683 1.19447 0.90870 0.83177 1.43211 0.89705 1.46112 1.03659 1.00553 1.85822 1.23030 0.97079 0.84240 0.97314 1.23411 0.91411 0.82481 0.99282 1.48448 1.57786 1.18636 1.08928 1.22540 1.04079 0.82181 0.93251 1.21515 0.91043 0.90886 0.92097 0.88070 1.45538 1.29764 1.14650 1.45349 1.20982 0.86548 0.82022 0.80697 1.90782 1.46347 1.73672 1.34172 1.22449 0.97186 0.84595 0.98993 1.88043 1.50450 1.26914 1.66676 1.24059 0.92777 0.89028 1.01463 1.22888 0.85116 0.95517 0.76480 1.92972 1.48983 1.85722 1.92903 1.92973 1.96650 1.94889 1.36171 1.22755 1.03364 0.92164 1.01368 1.21461 0.78058 0.88934 0.82375 1.90756 1.57348 1.49442 1.47717 1.22603 0.87332 0.90587 0.97455 0.94195 0.91227 0.96325 0.84077 0.87069 0.86828 0.73421 0.86357 0.85820 0.87092 0.86789 0.80654 0.88933 0.86002 0.95824 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 11.38 21.65 0.25 -60.06 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 4 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.24 -14.19 10.70 84.03 0.90 -13.30 16 8 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 9 N -0.63 -35.08 3.70 -717.29 -2.65 -37.73 16 10 C 0.11 4.78 8.45 86.48 0.73 5.51 16 11 C 0.14 5.03 4.82 46.76 0.23 5.26 16 12 N -0.60 -17.24 3.15 -799.65 -2.52 -19.76 16 13 C 0.10 1.46 7.07 86.83 0.61 2.07 16 14 C 0.15 2.39 3.43 46.05 0.16 2.55 16 15 H 0.10 1.93 7.73 -2.39 -0.02 1.91 16 16 N -0.70 -6.42 5.18 -437.52 -2.27 -8.69 16 17 C 0.51 7.86 7.90 87.66 0.69 8.55 16 18 O -0.57 -16.28 16.24 16.01 0.26 -16.02 16 19 C 0.05 0.31 6.42 71.24 0.46 0.77 16 20 O -0.40 -6.08 9.76 -129.94 -1.27 -7.35 16 21 C 0.00 0.02 6.16 71.98 0.44 0.46 16 22 C 0.25 2.18 5.63 71.98 0.41 2.58 16 23 F -0.22 -3.79 17.28 44.97 0.78 -3.02 16 24 F -0.23 -3.94 17.28 44.97 0.78 -3.16 16 25 C -0.16 -3.61 6.59 30.59 0.20 -3.40 16 26 C 0.50 17.26 7.44 87.90 0.65 17.91 16 27 O -0.57 -27.37 14.64 -3.04 -0.04 -27.42 16 28 C 0.15 7.54 6.89 86.49 0.60 8.14 16 29 H 0.25 15.18 8.31 -92.70 -0.77 14.41 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.02 0.90 7.41 -2.39 -0.02 0.89 16 32 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 33 H 0.11 0.89 7.77 -2.39 -0.02 0.87 16 34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.43 0.22 8.37 -92.71 -0.78 -0.55 16 36 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.18 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.12 2.39 8.08 -2.39 -0.02 2.37 16 43 H 0.02 1.40 5.57 -2.39 -0.01 1.39 16 44 H 0.04 2.45 7.15 -2.38 -0.02 2.43 16 Total: -1.00 -101.84 377.99 2.15 -99.69 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: 0.27 Total: 0.52 kcal Atomic # 6 Polarization: 26.94 SS G_CDS: 6.54 Total: 33.49 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -7.20 Total: -126.24 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -1.05 Total: -50.79 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 1.55 Total: -6.18 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -101.84 2.15 -99.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108558588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.779 kcal (2) G-P(sol) polarization free energy of solvation -101.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds