Wall clock time and date at job start Wed Apr 1 2020 05:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00126 * 2 1 4 4 H 1.48494 * 109.47236 * 240.00014 * 3 2 1 5 5 H 1.48502 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46954 * 120.00191 * 3 2 1 7 7 C 1.38805 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00054 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99678 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47259 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99660 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00287 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99792 * 179.97438 * 13 11 10 15 15 H 1.08999 * 110.55295 * 32.13177 * 14 13 11 16 16 C 1.54836 * 110.61247 * 269.09618 * 14 13 11 17 17 C 1.55846 * 103.52232 * 241.49505 * 16 14 13 18 18 H 1.09002 * 115.58274 * 158.88476 * 17 16 14 19 19 C 1.55848 * 105.71268 * 288.08383 * 17 16 14 20 20 C 1.54840 * 103.51642 * 71.91538 * 19 17 16 21 21 C 1.55854 * 110.61137 * 155.00189 * 14 13 11 22 22 H 1.08996 * 116.14636 * 319.27845 * 21 14 13 23 23 N 1.50647 * 101.02640 * 85.50998 * 21 14 13 24 24 C 1.46906 * 110.99800 * 170.23909 * 23 21 14 25 25 C 1.50692 * 109.47232 * 67.70830 * 24 23 21 26 26 C 1.38671 * 120.42152 * 264.30577 * 25 24 23 27 27 C 1.38635 * 118.42182 * 179.77933 * 26 25 24 28 28 C 1.38223 * 119.15802 * 0.51666 * 27 26 25 29 29 N 1.31851 * 120.76709 * 359.72069 * 28 27 26 30 30 C 1.31886 * 121.72479 * 0.02562 * 29 28 27 31 31 H 0.97000 * 119.99712 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.47679 * 59.99498 * 10 9 7 33 33 H 1.09000 * 109.47071 * 299.99230 * 10 9 7 34 34 H 0.97005 * 119.99676 * 359.97438 * 13 11 10 35 35 H 1.09000 * 110.61644 * 122.98251 * 16 14 13 36 36 H 1.09004 * 110.61310 * 0.02562 * 16 14 13 37 37 H 1.08998 * 110.61017 * 190.41908 * 19 17 16 38 38 H 1.08991 * 110.61130 * 313.40557 * 19 17 16 39 39 H 1.08997 * 110.61275 * 118.50847 * 20 19 17 40 40 H 1.08997 * 110.60945 * 241.49164 * 20 19 17 41 41 H 1.09000 * 109.47139 * 307.71153 * 24 23 21 42 42 H 1.08997 * 109.47338 * 187.71111 * 24 23 21 43 43 H 1.08001 * 120.78855 * 0.02562 * 26 25 24 44 44 H 1.07997 * 120.41495 * 180.21914 * 27 26 25 45 45 H 1.08003 * 119.61535 * 179.74881 * 28 27 26 46 46 H 1.08004 * 119.61772 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0029 11 6 1.9872 -5.3028 -0.0036 12 8 0.7909 -5.5023 -0.0029 13 7 2.8439 -6.3432 -0.0049 14 6 2.3301 -7.7151 -0.0050 15 1 1.3859 -7.7701 -0.5468 16 6 2.1618 -8.2342 1.4441 17 6 3.1276 -9.4557 1.5080 18 1 3.4422 -9.7551 2.5078 19 6 2.4549 -10.5709 0.6520 20 6 2.6247 -10.0637 -0.8011 21 6 3.3751 -8.6924 -0.6229 22 1 3.9088 -8.3317 -1.5021 23 7 4.2256 -9.0036 0.5809 24 6 5.1594 -10.1014 0.2961 25 6 6.1815 -9.6428 -0.7118 26 6 6.0040 -9.9066 -2.0616 27 6 6.9678 -9.4616 -2.9532 28 6 8.0712 -8.7841 -2.4694 29 7 8.2096 -8.5553 -1.1783 30 6 7.3105 -8.9595 -0.3021 31 1 -0.4850 0.8401 0.0004 32 1 3.1244 -3.7322 0.8870 33 1 3.1242 -3.7307 -0.8929 34 1 3.8007 -6.1836 -0.0059 35 1 1.1334 -8.5484 1.6222 36 1 2.4603 -7.4706 2.1624 37 1 2.9689 -11.5222 0.7889 38 1 1.3988 -10.6642 0.9050 39 1 3.2228 -10.7638 -1.3844 40 1 1.6528 -9.9057 -1.2684 41 1 4.6087 -10.9517 -0.1061 42 1 5.6637 -10.3974 1.2160 43 1 5.1335 -10.4424 -2.4104 44 1 6.8602 -9.6462 -4.0118 45 1 8.8286 -8.4377 -3.1570 46 1 7.4583 -8.7540 0.7479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110305285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:20 Heat of formation + Delta-G solvation = 27.434092 kcal Electronic energy + Delta-G solvation = -27740.783690 eV Core-core repulsion = 23950.046318 eV Total energy + Delta-G solvation = -3790.737372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.52534 -40.20232 -38.74770 -34.72754 -33.53192 -32.39828 -32.30801 -30.46070 -30.24556 -29.72295 -28.13314 -25.86214 -25.42646 -23.88179 -22.51557 -22.35226 -20.36696 -20.11744 -19.88397 -17.81676 -17.38633 -16.95381 -16.84407 -16.41056 -15.99569 -15.73890 -15.00231 -14.78951 -14.76083 -14.70242 -14.12815 -13.93179 -13.71590 -13.45934 -13.08140 -13.03523 -12.74288 -12.59517 -12.50806 -12.43687 -12.08784 -11.79421 -11.63364 -11.58251 -11.42109 -11.01448 -11.01263 -10.95180 -10.78282 -10.63016 -10.14771 -9.78682 -9.75227 -9.36558 -9.32141 -9.03873 -9.00228 -8.72979 -8.20501 -6.46429 -6.18709 -3.88847 0.77200 0.94702 3.06640 3.14228 3.26091 3.28873 3.31173 3.37573 3.64466 3.83065 4.08166 4.14212 4.23825 4.26895 4.37694 4.46791 4.48987 4.65612 4.66508 4.76824 4.86486 4.95915 4.97781 5.02209 5.07631 5.16372 5.22181 5.29433 5.34478 5.39439 5.43765 5.46597 5.51977 5.59905 5.69957 5.77715 5.86191 5.88515 5.94269 5.95854 6.05457 6.20236 6.27319 6.36849 6.58291 6.77248 7.62568 7.68602 7.82816 8.38301 8.68783 9.26611 10.88692 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012211 B = 0.002522 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.490925 B =11098.638919 C =12736.492141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.521 6.521 13 N -0.725 5.725 14 C 0.156 3.844 15 H 0.096 0.904 16 C -0.125 4.125 17 C 0.049 3.951 18 H 0.116 0.884 19 C -0.154 4.154 20 C -0.151 4.151 21 C 0.040 3.960 22 H 0.116 0.884 23 N -0.487 5.487 24 C 0.075 3.925 25 C -0.128 4.128 26 C -0.073 4.073 27 C -0.173 4.173 28 C 0.096 3.904 29 N -0.485 5.485 30 C 0.119 3.881 31 H 0.269 0.731 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.401 0.599 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.154 0.846 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.719 -26.806 -1.913 29.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.395 6.395 13 N -0.378 5.378 14 C 0.050 3.950 15 H 0.114 0.886 16 C -0.164 4.164 17 C -0.060 4.060 18 H 0.134 0.866 19 C -0.193 4.193 20 C -0.191 4.191 21 C -0.069 4.069 22 H 0.133 0.867 23 N -0.209 5.209 24 C -0.054 4.054 25 C -0.130 4.130 26 C -0.099 4.099 27 C -0.193 4.193 28 C -0.061 4.061 29 N -0.193 5.193 30 C -0.038 4.038 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.236 0.764 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.147 0.853 44 H 0.152 0.848 45 H 0.171 0.829 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.675 -26.082 -1.390 28.610 hybrid contribution 1.254 0.123 -0.726 1.455 sum 12.930 -25.960 -2.116 29.078 Atomic orbital electron populations 1.70011 1.05945 1.27515 1.46917 1.24986 0.95021 0.98996 0.94555 0.86230 0.79239 0.81249 0.78829 1.19940 1.20832 1.19924 1.22841 0.94900 0.91716 1.58913 0.90994 1.85349 1.05026 0.96277 1.96718 1.23527 1.06462 0.95476 1.04889 1.20317 0.86540 0.86317 0.74929 1.90688 1.15374 1.85611 1.47872 1.45945 1.10058 1.04728 1.77087 1.21871 0.96559 0.80860 0.95718 0.88636 1.23114 0.98755 0.96997 0.97571 1.24489 0.90473 0.94138 0.96854 0.86638 1.23280 1.02077 0.98918 0.94997 1.23466 1.01543 0.96906 0.97154 1.25005 0.92888 0.94828 0.94175 0.86656 1.67772 1.12011 1.32956 1.08210 1.21232 0.92961 0.93537 0.97656 1.20732 0.97299 1.00350 0.94660 1.21520 0.98439 0.97273 0.92686 1.22139 0.95731 1.00380 1.01028 1.22798 0.96442 0.94652 0.92181 1.67738 1.29818 1.18514 1.03196 1.22687 0.89083 0.92458 0.99594 0.92168 0.89256 0.89365 0.76439 0.90480 0.90136 0.91417 0.90480 0.91183 0.90430 0.92358 0.89526 0.85265 0.84840 0.82870 0.82745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -15.48 9.50 30.94 0.29 -15.18 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 11 C 0.53 10.03 7.85 -10.98 -0.09 9.95 16 12 O -0.52 -11.75 15.51 5.55 0.09 -11.67 16 13 N -0.72 -10.02 5.07 -51.40 -0.26 -10.28 16 14 C 0.16 1.81 2.82 -65.44 -0.18 1.62 16 15 H 0.10 1.28 7.30 -51.93 -0.38 0.90 16 16 C -0.13 -1.30 6.24 -24.24 -0.15 -1.45 16 17 C 0.05 0.37 4.92 -62.56 -0.31 0.06 16 18 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 19 C -0.15 -0.98 5.64 -24.24 -0.14 -1.12 16 20 C -0.15 -1.03 5.69 -23.40 -0.13 -1.17 16 21 C 0.04 0.34 3.92 -61.72 -0.24 0.10 16 22 H 0.12 1.06 7.23 -51.93 -0.38 0.68 16 23 N -0.49 -3.89 5.62 -206.06 -1.16 -5.05 16 24 C 0.07 0.49 4.81 -4.98 -0.02 0.46 16 25 C -0.13 -0.98 4.91 -104.49 -0.51 -1.49 16 26 C -0.07 -0.51 8.82 -39.28 -0.35 -0.85 16 27 C -0.17 -1.21 10.11 -39.44 -0.40 -1.61 16 28 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 29 N -0.48 -5.03 10.36 -13.25 -0.14 -5.17 16 30 C 0.12 1.08 10.88 -17.55 -0.19 0.89 16 31 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 33 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 34 H 0.40 4.91 8.66 -40.82 -0.35 4.56 16 35 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 36 H 0.08 0.98 7.98 -51.93 -0.41 0.56 16 37 H 0.07 0.36 7.31 -51.93 -0.38 -0.02 16 38 H 0.08 0.50 7.85 -51.93 -0.41 0.09 16 39 H 0.07 0.40 6.40 -51.93 -0.33 0.06 16 40 H 0.08 0.57 7.89 -51.93 -0.41 0.16 16 41 H 0.06 0.34 4.69 -51.93 -0.24 0.09 16 42 H 0.09 0.51 8.13 -51.93 -0.42 0.09 16 43 H 0.13 0.69 7.28 -52.49 -0.38 0.31 16 44 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 46 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -34.94 383.46 -11.27 -46.21 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.59 Total: 3.18 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.49 Total: -10.09 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.82 Total: -46.20 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.94 -11.27 -46.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110305285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.646 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds