Wall clock time and date at job start Wed Apr 1 2020 05:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00126 * 2 1 4 4 H 1.48494 * 109.47236 * 240.00014 * 3 2 1 5 5 H 1.48502 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46954 * 120.00191 * 3 2 1 7 7 C 1.38805 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00054 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99678 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47259 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99660 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00287 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99792 * 179.97438 * 13 11 10 15 15 H 1.08999 * 110.55295 * 32.13177 * 14 13 11 16 16 C 1.54836 * 110.61247 * 269.09618 * 14 13 11 17 17 C 1.55846 * 103.52232 * 241.49505 * 16 14 13 18 18 H 1.09002 * 115.58274 * 158.88476 * 17 16 14 19 19 C 1.55848 * 105.71268 * 288.08383 * 17 16 14 20 20 C 1.54840 * 103.51642 * 71.91538 * 19 17 16 21 21 C 1.55854 * 110.61137 * 155.00189 * 14 13 11 22 22 H 1.08996 * 116.14636 * 319.27845 * 21 14 13 23 23 N 1.50647 * 101.02640 * 85.50998 * 21 14 13 24 24 C 1.46906 * 110.99800 * 170.23909 * 23 21 14 25 25 C 1.50692 * 109.47232 * 67.70830 * 24 23 21 26 26 C 1.38671 * 120.42152 * 264.30577 * 25 24 23 27 27 C 1.38635 * 118.42182 * 179.77933 * 26 25 24 28 28 C 1.38223 * 119.15802 * 0.51666 * 27 26 25 29 29 N 1.31851 * 120.76709 * 359.72069 * 28 27 26 30 30 C 1.31886 * 121.72479 * 0.02562 * 29 28 27 31 31 H 0.97000 * 119.99712 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.47679 * 59.99498 * 10 9 7 33 33 H 1.09000 * 109.47071 * 299.99230 * 10 9 7 34 34 H 0.97005 * 119.99676 * 359.97438 * 13 11 10 35 35 H 1.09000 * 110.61644 * 122.98251 * 16 14 13 36 36 H 1.09004 * 110.61310 * 0.02562 * 16 14 13 37 37 H 1.08998 * 110.61017 * 190.41908 * 19 17 16 38 38 H 1.08991 * 110.61130 * 313.40557 * 19 17 16 39 39 H 1.08997 * 110.61275 * 118.50847 * 20 19 17 40 40 H 1.08997 * 110.60945 * 241.49164 * 20 19 17 41 41 H 1.09000 * 109.47139 * 307.71153 * 24 23 21 42 42 H 1.08997 * 109.47338 * 187.71111 * 24 23 21 43 43 H 1.08001 * 120.78855 * 0.02562 * 26 25 24 44 44 H 1.07997 * 120.41495 * 180.21914 * 27 26 25 45 45 H 1.08003 * 119.61535 * 179.74881 * 28 27 26 46 46 H 1.08004 * 119.61772 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0029 11 6 1.9872 -5.3028 -0.0036 12 8 0.7909 -5.5023 -0.0029 13 7 2.8439 -6.3432 -0.0049 14 6 2.3301 -7.7151 -0.0050 15 1 1.3859 -7.7701 -0.5468 16 6 2.1618 -8.2342 1.4441 17 6 3.1276 -9.4557 1.5080 18 1 3.4422 -9.7551 2.5078 19 6 2.4549 -10.5709 0.6520 20 6 2.6247 -10.0637 -0.8011 21 6 3.3751 -8.6924 -0.6229 22 1 3.9088 -8.3317 -1.5021 23 7 4.2256 -9.0036 0.5809 24 6 5.1594 -10.1014 0.2961 25 6 6.1815 -9.6428 -0.7118 26 6 6.0040 -9.9066 -2.0616 27 6 6.9678 -9.4616 -2.9532 28 6 8.0712 -8.7841 -2.4694 29 7 8.2096 -8.5553 -1.1783 30 6 7.3105 -8.9595 -0.3021 31 1 -0.4850 0.8401 0.0004 32 1 3.1244 -3.7322 0.8870 33 1 3.1242 -3.7307 -0.8929 34 1 3.8007 -6.1836 -0.0059 35 1 1.1334 -8.5484 1.6222 36 1 2.4603 -7.4706 2.1624 37 1 2.9689 -11.5222 0.7889 38 1 1.3988 -10.6642 0.9050 39 1 3.2228 -10.7638 -1.3844 40 1 1.6528 -9.9057 -1.2684 41 1 4.6087 -10.9517 -0.1061 42 1 5.6637 -10.3974 1.2160 43 1 5.1335 -10.4424 -2.4104 44 1 6.8602 -9.6462 -4.0118 45 1 8.8286 -8.4377 -3.1570 46 1 7.4583 -8.7540 0.7479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110305285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:19 Heat of formation + Delta-G solvation = 2.643330 kcal Electronic energy + Delta-G solvation = -27741.858699 eV Core-core repulsion = 23950.046318 eV Total energy + Delta-G solvation = -3791.812380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22851 -40.86952 -40.12760 -35.76595 -34.59403 -34.37827 -32.87961 -31.65258 -30.81209 -30.56080 -29.28471 -27.65844 -26.47286 -24.45513 -23.32199 -23.04739 -21.52666 -20.95984 -20.61068 -19.79248 -17.94916 -17.90641 -17.75101 -17.49457 -16.89323 -16.85746 -16.43059 -16.24699 -16.06376 -15.63601 -15.23722 -14.72814 -14.68842 -14.49183 -14.27329 -14.00644 -13.91744 -13.59750 -13.26856 -13.17792 -13.17553 -12.97228 -12.87079 -12.73819 -12.62198 -12.31676 -12.15814 -12.13258 -11.76500 -11.69114 -11.37178 -11.13682 -10.84541 -10.72125 -10.35151 -10.29623 -10.10523 -9.92051 -9.47887 -8.67179 -8.35290 -6.13361 0.20671 0.39356 1.26356 1.43286 1.45869 1.56335 1.61733 2.25641 2.30038 2.74709 2.98553 3.08490 3.31384 3.42321 3.51738 3.68104 3.77053 3.92319 3.95372 3.98859 4.07018 4.12666 4.14898 4.21278 4.25676 4.31469 4.40798 4.47163 4.49063 4.49346 4.59740 4.68105 4.74684 4.88176 4.93559 4.98864 5.08405 5.10792 5.19295 5.23133 5.29462 5.34729 5.40702 5.52314 5.68272 5.82575 6.01165 6.18901 6.53014 7.05772 7.09959 7.25941 8.73752 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012211 B = 0.002522 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.490925 B =11098.638919 C =12736.492141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.080 0.920 9 S -0.145 6.145 10 C -0.130 4.130 11 C 0.535 3.465 12 O -0.564 6.564 13 N -0.701 5.701 14 C 0.147 3.853 15 H 0.075 0.925 16 C -0.126 4.126 17 C 0.058 3.942 18 H 0.132 0.868 19 C -0.149 4.149 20 C -0.147 4.147 21 C 0.048 3.952 22 H 0.114 0.886 23 N -0.496 5.496 24 C 0.079 3.921 25 C -0.128 4.128 26 C -0.075 4.075 27 C -0.172 4.172 28 C 0.079 3.921 29 N -0.518 5.518 30 C 0.101 3.899 31 H 0.272 0.728 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.412 0.588 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.168 0.832 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.714 -28.450 -2.310 32.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.697 4.697 8 H 0.098 0.902 9 S 0.082 5.918 10 C -0.281 4.281 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.353 5.353 14 C 0.042 3.958 15 H 0.093 0.907 16 C -0.165 4.165 17 C -0.050 4.050 18 H 0.150 0.850 19 C -0.187 4.187 20 C -0.186 4.186 21 C -0.061 4.061 22 H 0.132 0.868 23 N -0.219 5.219 24 C -0.049 4.049 25 C -0.130 4.130 26 C -0.102 4.102 27 C -0.192 4.192 28 C -0.078 4.078 29 N -0.227 5.227 30 C -0.056 4.056 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.248 0.752 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.168 0.832 44 H 0.175 0.825 45 H 0.185 0.815 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 13.716 -27.774 -1.784 31.027 hybrid contribution 0.678 0.518 -0.615 1.052 sum 14.394 -27.255 -2.400 30.916 Atomic orbital electron populations 1.70173 1.07929 1.28706 1.47889 1.26120 0.95979 1.03264 0.93666 0.85014 0.77840 0.75725 0.79491 1.18688 1.20197 1.18715 1.23179 0.95304 0.92175 1.59087 0.90152 1.85489 1.10309 0.98984 1.97031 1.23370 1.03579 0.94826 1.06360 1.20008 0.86280 0.86553 0.75025 1.90676 1.17170 1.86027 1.50413 1.45745 1.09956 1.04794 1.74789 1.22092 0.96896 0.79870 0.96939 0.90713 1.23058 0.99572 0.97953 0.95925 1.24485 0.89629 0.93024 0.97891 0.85048 1.23263 1.02166 0.99203 0.94098 1.23468 1.01315 0.95971 0.97865 1.24863 0.92287 0.94758 0.94176 0.86831 1.67739 1.12165 1.34211 1.07797 1.21258 0.92383 0.93202 0.98010 1.20822 0.96964 0.99904 0.95321 1.21825 0.98995 0.96963 0.92404 1.22423 0.95028 0.99384 1.02329 1.23150 0.97579 0.95154 0.91906 1.67695 1.30952 1.19768 1.04291 1.22841 0.89768 0.93288 0.99739 0.91932 0.87724 0.87712 0.75165 0.90839 0.92098 0.89314 0.90677 0.89034 0.91086 0.90773 0.88546 0.83188 0.82536 0.81520 0.82568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.59 13.22 21.65 0.29 -56.30 16 2 C 0.01 0.84 5.49 84.86 0.47 1.31 16 3 Si 1.00 44.30 29.55 68.60 2.03 46.33 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.55 -32.10 9.50 67.96 0.65 -31.46 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.24 20.57 -56.49 -1.16 -9.40 16 10 C -0.13 -5.40 6.16 71.24 0.44 -4.97 16 11 C 0.54 20.45 7.85 87.66 0.69 21.14 16 12 O -0.56 -26.42 15.51 -3.04 -0.05 -26.47 16 13 N -0.70 -19.08 5.07 -434.93 -2.21 -21.29 16 14 C 0.15 3.34 2.82 46.61 0.13 3.47 16 15 H 0.07 2.04 7.30 -2.39 -0.02 2.03 16 16 C -0.13 -2.55 6.24 32.21 0.20 -2.35 16 17 C 0.06 0.73 4.92 46.15 0.23 0.96 16 18 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 19 C -0.15 -1.43 5.64 32.21 0.18 -1.25 16 20 C -0.15 -1.59 5.69 32.75 0.19 -1.40 16 21 C 0.05 0.73 3.92 46.69 0.18 0.92 16 22 H 0.11 1.82 7.23 -2.39 -0.02 1.80 16 23 N -0.50 -6.70 5.62 -805.83 -4.53 -11.23 16 24 C 0.08 0.78 4.81 85.55 0.41 1.19 16 25 C -0.13 -1.65 4.91 -19.78 -0.10 -1.75 16 26 C -0.08 -0.84 8.82 22.47 0.20 -0.64 16 27 C -0.17 -2.01 10.11 22.36 0.23 -1.78 16 28 C 0.08 1.22 11.18 84.69 0.95 2.17 16 29 N -0.52 -10.43 10.36 -195.84 -2.03 -12.46 16 30 C 0.10 1.71 10.88 84.67 0.92 2.63 16 31 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 32 H 0.10 4.01 8.14 -2.40 -0.02 3.99 16 33 H 0.10 3.99 8.14 -2.39 -0.02 3.97 16 34 H 0.41 9.59 8.66 -92.70 -0.80 8.79 16 35 H 0.07 1.52 7.85 -2.39 -0.02 1.50 16 36 H 0.06 1.47 7.98 -2.39 -0.02 1.45 16 37 H 0.09 0.55 7.31 -2.39 -0.02 0.53 16 38 H 0.07 0.80 7.85 -2.39 -0.02 0.78 16 39 H 0.09 0.64 6.40 -2.39 -0.02 0.62 16 40 H 0.07 0.90 7.89 -2.39 -0.02 0.88 16 41 H 0.07 0.52 4.69 -2.39 -0.01 0.51 16 42 H 0.10 0.81 8.13 -2.39 -0.02 0.79 16 43 H 0.15 0.99 7.28 -2.91 -0.02 0.97 16 44 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 45 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 46 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -78.71 383.46 -1.50 -80.21 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.20 Total: 22.40 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 5.96 Total: -11.79 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -8.48 Total: -101.28 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.05 Total: -26.47 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Total: -78.71 -1.50 -80.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110305285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.851 kcal (2) G-P(sol) polarization free energy of solvation -78.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds