Wall clock time and date at job start Wed Apr 1 2020 05:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 119.99841 * 2 1 4 4 H 1.48502 * 109.46802 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47507 * 300.00183 * 3 2 1 6 6 H 1.48500 * 109.47154 * 60.00761 * 3 2 1 7 7 C 1.38955 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99896 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99793 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99866 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99935 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47278 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00078 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46881 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47270 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47551 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00199 * 180.02562 * 17 16 15 19 19 O 1.21523 * 119.99904 * 359.97438 * 18 17 16 20 20 C 1.48123 * 119.99976 * 180.27146 * 18 17 16 21 21 C 1.39810 * 119.37265 * 179.44959 * 20 18 17 22 22 C 1.36972 * 119.60785 * 179.78824 * 21 20 18 23 23 C 1.39814 * 118.25282 * 0.45472 * 22 21 20 24 24 N 1.34648 * 135.00757 * 179.78146 * 23 22 21 25 25 N 1.28673 * 109.15800 * 180.02562 * 24 23 22 26 26 N 1.28770 * 111.85087 * 0.02562 * 25 24 23 27 27 H 0.96991 * 125.86102 * 180.02562 * 26 25 24 28 28 C 1.37249 * 108.27524 * 359.97438 * 26 25 24 29 29 N 1.31961 * 134.70452 * 180.02562 * 28 26 25 30 30 H 0.96994 * 119.99890 * 359.97438 * 1 2 3 31 31 H 0.96997 * 119.99962 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47330 * 59.99737 * 12 10 9 33 33 H 1.09000 * 109.46873 * 299.99452 * 12 10 9 34 34 H 1.00897 * 111.00050 * 303.95447 * 13 12 10 35 35 H 1.08992 * 109.47062 * 60.00462 * 14 13 12 36 36 H 1.08997 * 109.47406 * 299.99934 * 14 13 12 37 37 H 1.09007 * 109.47300 * 60.00504 * 15 14 13 38 38 H 1.09003 * 109.47766 * 300.00391 * 15 14 13 39 39 H 1.08998 * 109.47059 * 60.00118 * 16 15 14 40 40 H 1.09002 * 109.47542 * 300.00553 * 16 15 14 41 41 H 0.97001 * 120.00074 * 359.97438 * 17 16 15 42 42 H 1.07999 * 120.19951 * 0.02562 * 21 20 18 43 43 H 1.07997 * 120.87829 * 180.22570 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 7 2.1983 -5.9796 -0.0016 14 6 1.4980 -7.2708 -0.0016 15 6 2.5229 -8.4068 -0.0028 16 6 1.7936 -9.7518 -0.0021 17 7 2.7749 -10.8395 -0.0026 18 6 2.3597 -12.1217 -0.0026 19 8 1.1712 -12.3756 -0.0018 20 6 3.3519 -13.2215 0.0029 21 6 2.9066 -14.5468 0.0145 22 6 3.8200 -15.5675 0.0153 23 6 5.1791 -15.2396 0.0141 24 7 6.3281 -15.9416 0.0180 25 7 7.3221 -15.1246 0.0148 26 7 6.9335 -13.8969 0.0095 27 1 7.5114 -13.1180 0.0060 28 6 5.5611 -13.8799 0.0084 29 7 4.6445 -12.9306 0.0035 30 1 -0.4850 0.8400 0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6174 -4.9205 -0.8913 33 1 0.6168 -4.9209 0.8887 34 1 2.8331 -5.9122 -0.7829 35 1 0.8729 -7.3451 -0.8913 36 1 0.8734 -7.3454 0.8886 37 1 3.1484 -8.3328 0.8869 38 1 3.1472 -8.3321 -0.8931 39 1 1.1677 -9.8262 -0.8914 40 1 1.1695 -9.8263 0.8885 41 1 3.7235 -10.6370 -0.0036 42 1 1.8488 -14.7645 0.0189 43 1 3.4988 -16.5986 0.0205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159428736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:35 Heat of formation + Delta-G solvation = 55.992440 kcal Electronic energy + Delta-G solvation = -27478.761154 eV Core-core repulsion = 23175.261702 eV Total energy + Delta-G solvation = -4303.499452 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.04642 -40.75670 -38.98638 -38.33743 -36.65989 -35.16722 -34.84269 -33.87416 -32.61326 -31.95246 -31.31114 -30.98280 -27.49625 -26.28307 -24.97606 -24.37000 -23.43111 -23.17095 -21.80025 -21.35559 -19.61763 -19.28247 -19.08467 -18.41199 -17.88593 -17.27633 -16.62602 -16.34419 -16.05515 -15.79322 -15.55137 -15.03886 -14.75964 -14.47775 -14.30874 -14.19099 -13.86357 -13.68192 -13.52351 -13.39082 -13.02301 -12.90637 -12.46429 -12.34858 -12.12014 -11.91469 -11.86850 -11.50590 -11.47133 -11.13104 -10.99346 -10.93827 -10.35908 -10.25951 -10.23686 -9.96707 -9.79198 -9.53918 -9.47885 -8.49936 -8.10476 -7.97972 -6.43615 -3.84499 -0.59274 0.27099 1.40999 1.43479 2.16372 2.50395 3.02277 3.04663 3.14954 3.25673 3.32791 3.50604 3.66330 3.88621 4.02735 4.06956 4.11650 4.26974 4.66425 4.70422 4.74840 4.87157 4.99039 5.06623 5.13557 5.17986 5.23694 5.36210 5.42214 5.55354 5.56190 5.75699 5.84968 5.88973 5.94845 5.96242 6.04192 6.24520 6.59555 7.02962 7.15730 7.43619 7.53650 7.60807 7.62852 8.04613 8.59218 9.16056 9.52393 10.03616 10.74169 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.024596 B = 0.001308 C = 0.001244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.136190 B =21400.725233 C =22505.735802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.063 3.937 15 C -0.130 4.130 16 C 0.118 3.882 17 N -0.704 5.704 18 C 0.571 3.429 19 O -0.521 6.521 20 C 0.151 3.849 21 C -0.121 4.121 22 C 0.000 4.000 23 C -0.022 4.022 24 N -0.238 5.238 25 N 0.014 4.986 26 N -0.400 5.400 27 H 0.461 0.539 28 C 0.216 3.784 29 N -0.445 5.445 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.349 0.651 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.412 0.588 42 H 0.169 0.831 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.212 -30.832 -0.872 31.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.067 4.067 15 C -0.168 4.168 16 C -0.006 4.006 17 N -0.356 5.356 18 C 0.354 3.646 19 O -0.396 6.396 20 C -0.004 4.004 21 C -0.145 4.145 22 C -0.031 4.031 23 C -0.150 4.150 24 N -0.115 5.115 25 N 0.031 4.969 26 N -0.132 5.132 27 H 0.310 0.690 28 C -0.029 4.029 29 N -0.161 5.161 30 H 0.081 0.919 31 H 0.226 0.774 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.168 0.832 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.248 0.752 42 H 0.186 0.814 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.624 -30.936 -0.189 31.638 hybrid contribution -0.699 1.423 -0.898 1.822 sum 5.925 -29.513 -1.087 30.122 Atomic orbital electron populations 1.69620 1.05946 1.28079 1.50616 1.25268 0.95635 0.99734 0.97297 0.85796 0.79702 0.81111 0.77711 1.19223 1.20772 1.20725 1.19762 0.93412 0.82233 1.47536 0.87859 1.41873 1.09222 1.04616 1.64301 1.19812 0.88385 0.84742 0.84502 1.90519 1.13776 1.87084 1.55471 1.21670 0.94326 0.90892 1.01306 1.60036 1.18950 0.99900 1.51346 1.21820 0.95270 0.88757 1.00900 1.21753 0.99046 0.92169 1.03871 1.21468 0.91183 0.84856 1.03080 1.45880 1.11707 1.05058 1.72912 1.17646 0.87006 0.82354 0.77592 1.90847 1.15586 1.83589 1.49585 1.21226 0.88149 0.94122 0.96863 1.21761 1.02693 0.90922 0.99103 1.20566 0.87600 1.01546 0.93338 1.20715 0.95777 0.91351 1.07145 1.75462 0.94740 1.23696 1.17567 1.78159 1.21710 0.86054 1.10986 1.44739 1.04071 1.09246 1.55134 0.69032 1.19768 0.86309 0.91791 1.05015 1.66244 1.00300 1.35942 1.13638 0.91906 0.77437 0.93790 0.89516 0.83172 0.95163 0.90683 0.89988 0.91124 0.90846 0.90610 0.75156 0.81387 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 2 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 3 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 10 C 0.44 10.27 7.82 -10.99 -0.09 10.18 16 11 O -0.58 -15.71 15.78 5.55 0.09 -15.62 16 12 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 13 N -0.67 -10.20 6.13 -115.07 -0.70 -10.90 16 14 C 0.06 0.68 5.69 -3.83 -0.02 0.66 16 15 C -0.13 -1.11 5.59 -26.73 -0.15 -1.26 16 16 C 0.12 0.94 5.67 -4.04 -0.02 0.92 16 17 N -0.70 -5.46 5.54 -61.16 -0.34 -5.80 16 18 C 0.57 5.12 7.81 -12.20 -0.10 5.03 16 19 O -0.52 -6.00 16.29 5.35 0.09 -5.91 16 20 C 0.15 1.15 6.74 -82.94 -0.56 0.59 16 21 C -0.12 -0.70 9.55 -39.45 -0.38 -1.08 16 22 C 0.00 0.00 10.16 -39.45 -0.40 -0.40 16 23 C -0.02 -0.17 7.38 -84.91 -0.63 -0.80 16 24 N -0.24 -2.11 12.43 32.12 0.40 -1.71 16 25 N 0.01 0.11 13.28 60.35 0.80 0.91 16 26 N -0.40 -2.29 7.06 31.13 0.22 -2.07 16 27 H 0.46 1.00 8.96 -190.27 -1.71 -0.70 16 28 C 0.22 1.61 8.56 -156.28 -1.34 0.27 16 29 N -0.44 -3.35 9.54 -8.91 -0.08 -3.43 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.35 5.45 8.43 -39.29 -0.33 5.12 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.41 2.71 7.78 -40.82 -0.32 2.39 16 42 H 0.17 0.74 7.61 -52.49 -0.40 0.34 16 43 H 0.16 0.39 8.06 -52.49 -0.42 -0.03 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -34.87 380.91 -8.49 -43.36 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -6.39 Total: 10.46 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -3.95 Total: 6.97 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 0.96 Total: -60.87 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.17 Total: -21.53 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.87 -8.49 -43.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159428736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.353 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds