Wall clock time and date at job start Wed Apr 1 2020 05:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00175 * 2 1 4 4 H 1.48500 * 109.47359 * 239.99583 * 3 2 1 5 5 H 1.48497 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47214 * 120.00009 * 3 2 1 7 7 C 1.38956 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99674 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00027 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99798 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.46998 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00204 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46983 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.47000 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47198 * 179.97438 * 16 15 14 18 18 C 1.34777 * 119.99665 * 180.27868 * 17 16 15 19 19 O 1.21543 * 120.00296 * 359.72071 * 18 17 16 20 20 C 1.47877 * 119.99819 * 179.72371 * 18 17 16 21 21 C 1.39449 * 121.11218 * 359.71668 * 20 18 17 22 22 C 1.38625 * 119.37595 * 179.73836 * 21 20 18 23 23 N 1.31587 * 121.62919 * 0.57721 * 22 21 20 24 24 C 1.32212 * 121.86894 * 359.69160 * 23 22 21 25 25 N 1.37213 * 134.67004 * 180.02562 * 24 23 22 26 26 H 0.97001 * 125.86998 * 359.97438 * 25 24 23 27 27 N 1.28779 * 108.25561 * 180.02562 * 25 24 23 28 28 N 1.28689 * 111.76178 * 0.02562 * 27 25 24 29 29 C 1.34392 * 109.15148 * 359.97438 * 28 27 25 30 30 H 0.97007 * 120.00002 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00232 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47582 * 60.00001 * 12 10 9 33 33 H 1.09000 * 109.47057 * 299.99115 * 12 10 9 34 34 H 1.00901 * 110.99869 * 303.94978 * 13 12 10 35 35 H 1.08995 * 109.46789 * 59.99760 * 14 13 12 36 36 H 1.09007 * 109.46566 * 299.99922 * 14 13 12 37 37 H 1.08995 * 109.47672 * 60.00156 * 15 14 13 38 38 H 1.09006 * 109.46819 * 299.99586 * 15 14 13 39 39 H 1.09009 * 109.46730 * 59.99606 * 16 15 14 40 40 H 1.08998 * 109.46846 * 300.00150 * 16 15 14 41 41 H 0.97001 * 119.99790 * 359.97438 * 17 16 15 42 42 H 1.08001 * 120.31368 * 359.97438 * 21 20 18 43 43 H 1.07992 * 119.18477 * 180.26862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5580 0.0021 12 6 1.2436 -4.8629 0.0010 13 7 2.1981 -5.9796 0.0017 14 6 1.4978 -7.2709 0.0018 15 6 2.5227 -8.4069 0.0032 16 6 1.7933 -9.7518 0.0039 17 7 2.7746 -10.8396 0.0047 18 6 2.3594 -12.1218 -0.0003 19 8 1.1707 -12.3756 -0.0002 20 6 3.3499 -13.2197 -0.0057 21 6 4.7190 -12.9550 -0.0117 22 6 5.6160 -14.0119 -0.0111 23 7 5.2083 -15.2630 -0.0164 24 6 3.9245 -15.5788 -0.0164 25 7 3.2208 -16.7568 -0.0205 26 1 3.6042 -17.6478 -0.0249 27 7 1.9640 -16.4760 -0.0186 28 7 1.7590 -15.2055 -0.0141 29 6 2.9421 -14.5680 -0.0122 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3907 0.0005 32 1 0.6179 -4.9209 -0.8897 33 1 0.6160 -4.9205 0.8903 34 1 2.8336 -5.9125 -0.7792 35 1 0.8733 -7.3455 -0.8884 36 1 0.8725 -7.3450 0.8916 37 1 3.1469 -8.3321 0.8936 38 1 3.1483 -8.3329 -0.8864 39 1 1.1688 -9.8269 -0.8863 40 1 1.1680 -9.8255 0.8937 41 1 3.7233 -10.6369 0.0043 42 1 5.0772 -11.9361 -0.0129 43 1 6.6756 -13.8034 -0.0114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162285722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:11 Heat of formation + Delta-G solvation = 60.665301 kcal Electronic energy + Delta-G solvation = -27618.026443 eV Core-core repulsion = 23314.729621 eV Total energy + Delta-G solvation = -4303.296822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.98187 -40.48038 -39.20331 -38.32840 -36.63692 -35.01970 -34.77002 -33.86981 -32.81309 -31.46238 -31.33395 -31.02053 -27.41949 -26.14674 -24.88160 -24.49796 -23.76822 -22.94830 -21.82188 -21.39152 -19.49728 -19.21652 -19.06297 -18.04834 -17.86779 -17.19161 -16.60916 -16.30780 -16.04423 -15.86704 -15.44343 -15.38987 -14.67237 -14.51389 -14.39752 -14.21953 -13.84321 -13.64972 -13.45826 -13.39228 -12.94900 -12.87431 -12.24249 -12.18599 -12.02993 -11.88267 -11.84190 -11.48686 -11.45524 -11.09570 -10.96435 -10.77289 -10.44848 -10.22108 -10.09835 -9.94705 -9.72426 -9.50801 -9.45089 -8.48809 -8.09437 -7.96924 -6.42260 -3.83286 -0.57793 0.22029 1.55189 1.62264 2.30536 2.48125 3.05426 3.15674 3.19614 3.25569 3.29739 3.60005 3.79739 3.84322 3.89902 4.06341 4.11206 4.27355 4.47952 4.73503 4.76450 4.84410 4.91148 5.00162 5.06061 5.15701 5.25033 5.38748 5.44962 5.50551 5.58947 5.77262 5.87679 5.96186 5.97551 5.98870 6.04736 6.25674 6.83569 6.98197 7.16512 7.54276 7.59453 7.62015 7.71559 8.05236 8.60422 9.16933 9.53490 10.04804 10.75331 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.037592 B = 0.001275 C = 0.001235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.661160 B =21959.012583 C =22670.580366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.585 6.585 12 C 0.051 3.949 13 N -0.669 5.669 14 C 0.062 3.938 15 C -0.129 4.129 16 C 0.120 3.880 17 N -0.719 5.719 18 C 0.550 3.450 19 O -0.498 6.498 20 C -0.008 4.008 21 C -0.140 4.140 22 C 0.163 3.837 23 N -0.457 5.457 24 C 0.214 3.786 25 N -0.404 5.404 26 H 0.459 0.541 27 N 0.005 4.995 28 N -0.209 5.209 29 C 0.002 3.998 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.349 0.651 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.401 0.599 42 H 0.161 0.839 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.850 -31.418 -0.914 32.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.168 4.168 16 C -0.003 4.003 17 N -0.373 5.373 18 C 0.334 3.666 19 O -0.371 6.371 20 C -0.025 4.025 21 C -0.163 4.163 22 C -0.010 4.010 23 N -0.171 5.171 24 C -0.029 4.029 25 N -0.135 5.135 26 H 0.307 0.693 27 N 0.022 4.978 28 N -0.085 5.085 29 C -0.127 4.127 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.168 0.832 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.237 0.763 42 H 0.178 0.822 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 7.749 -32.649 -0.236 33.556 hybrid contribution 0.651 1.325 -0.897 1.727 sum 8.400 -31.324 -1.133 32.450 Atomic orbital electron populations 1.69605 1.05946 1.28291 1.50410 1.25263 0.95627 0.99723 0.97253 0.85913 0.78761 0.80446 0.79065 1.19928 1.20972 1.19871 1.19659 0.93355 0.82261 1.47819 0.87963 1.41858 1.09221 1.04601 1.64253 1.19806 0.88382 0.84732 0.84540 1.90515 1.13764 1.87087 1.55548 1.21670 0.94336 0.90892 1.01312 1.60047 1.18916 0.99893 1.51332 1.21826 0.95310 0.88753 1.00945 1.21752 0.99049 0.92194 1.03772 1.21419 0.91139 0.84638 1.03102 1.45871 1.10903 1.05220 1.75280 1.17869 0.88084 0.82382 0.78267 1.90903 1.16088 1.83412 1.46689 1.19662 0.93926 0.90611 0.98267 1.22457 0.91612 1.02344 0.99925 1.22894 1.01026 0.84885 0.92171 1.66335 1.13742 1.23188 1.13838 1.19878 0.91280 0.86872 1.04897 1.44747 1.04415 1.08935 1.55374 0.69290 1.78293 0.96178 1.11690 1.11643 1.75612 1.21288 0.96041 1.15590 1.20136 0.91233 0.94475 1.06855 0.91799 0.77428 0.93795 0.89524 0.83196 0.95153 0.90690 0.89971 0.91120 0.90966 0.90711 0.76329 0.82201 0.79808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 10 C 0.44 10.23 7.82 -10.99 -0.09 10.14 16 11 O -0.58 -15.61 15.78 5.54 0.09 -15.52 16 12 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 13 N -0.67 -10.07 6.13 -115.05 -0.70 -10.78 16 14 C 0.06 0.67 5.69 -3.82 -0.02 0.65 16 15 C -0.13 -1.04 5.59 -26.73 -0.15 -1.19 16 16 C 0.12 0.97 5.67 -4.04 -0.02 0.95 16 17 N -0.72 -5.03 5.51 -61.24 -0.34 -5.37 16 18 C 0.55 5.52 7.79 -12.31 -0.10 5.42 16 19 O -0.50 -7.22 16.27 5.33 0.09 -7.13 16 20 C -0.01 -0.07 5.92 -104.51 -0.62 -0.69 16 21 C -0.14 -0.53 9.61 -38.99 -0.37 -0.91 16 22 C 0.16 0.58 11.14 -17.51 -0.20 0.39 16 23 N -0.46 -2.96 10.35 -12.39 -0.13 -3.09 16 24 C 0.21 1.74 8.56 -156.21 -1.34 0.40 16 25 N -0.40 -2.67 7.06 31.11 0.22 -2.45 16 26 H 0.46 1.10 8.96 -190.25 -1.71 -0.60 16 27 N 0.00 0.05 13.29 60.35 0.80 0.85 16 28 N -0.21 -2.60 11.92 32.23 0.38 -2.21 16 29 C 0.00 0.02 6.97 -84.73 -0.59 -0.57 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.35 5.34 8.43 -39.29 -0.33 5.01 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.40 1.48 6.62 -40.82 -0.27 1.21 16 42 H 0.16 0.01 6.53 -52.49 -0.34 -0.33 16 43 H 0.19 -0.08 8.06 -52.49 -0.42 -0.51 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -38.05 378.74 -8.29 -46.34 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.29 Total: 8.21 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -3.76 Total: 7.45 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.90 Total: -60.89 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.17 Total: -22.65 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.05 -8.29 -46.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162285722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.005 kcal (2) G-P(sol) polarization free energy of solvation -38.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds