Wall clock time and date at job start Wed Apr 1 2020 05:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00175 * 2 1 4 4 H 1.48500 * 109.47359 * 239.99583 * 3 2 1 5 5 H 1.48497 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47214 * 120.00009 * 3 2 1 7 7 C 1.38956 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99674 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00027 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99798 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.46998 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00204 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46983 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.47000 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47198 * 179.97438 * 16 15 14 18 18 C 1.34777 * 119.99665 * 180.27868 * 17 16 15 19 19 O 1.21543 * 120.00296 * 359.72071 * 18 17 16 20 20 C 1.47877 * 119.99819 * 179.72371 * 18 17 16 21 21 C 1.39449 * 121.11218 * 359.71668 * 20 18 17 22 22 C 1.38625 * 119.37595 * 179.73836 * 21 20 18 23 23 N 1.31587 * 121.62919 * 0.57721 * 22 21 20 24 24 C 1.32212 * 121.86894 * 359.69160 * 23 22 21 25 25 N 1.37213 * 134.67004 * 180.02562 * 24 23 22 26 26 H 0.97001 * 125.86998 * 359.97438 * 25 24 23 27 27 N 1.28779 * 108.25561 * 180.02562 * 25 24 23 28 28 N 1.28689 * 111.76178 * 0.02562 * 27 25 24 29 29 C 1.34392 * 109.15148 * 359.97438 * 28 27 25 30 30 H 0.97007 * 120.00002 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00232 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47582 * 60.00001 * 12 10 9 33 33 H 1.09000 * 109.47057 * 299.99115 * 12 10 9 34 34 H 1.00901 * 110.99869 * 303.94978 * 13 12 10 35 35 H 1.08995 * 109.46789 * 59.99760 * 14 13 12 36 36 H 1.09007 * 109.46566 * 299.99922 * 14 13 12 37 37 H 1.08995 * 109.47672 * 60.00156 * 15 14 13 38 38 H 1.09006 * 109.46819 * 299.99586 * 15 14 13 39 39 H 1.09009 * 109.46730 * 59.99606 * 16 15 14 40 40 H 1.08998 * 109.46846 * 300.00150 * 16 15 14 41 41 H 0.97001 * 119.99790 * 359.97438 * 17 16 15 42 42 H 1.08001 * 120.31368 * 359.97438 * 21 20 18 43 43 H 1.07992 * 119.18477 * 180.26862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5580 0.0021 12 6 1.2436 -4.8629 0.0010 13 7 2.1981 -5.9796 0.0017 14 6 1.4978 -7.2709 0.0018 15 6 2.5227 -8.4069 0.0032 16 6 1.7933 -9.7518 0.0039 17 7 2.7746 -10.8396 0.0047 18 6 2.3594 -12.1218 -0.0003 19 8 1.1707 -12.3756 -0.0002 20 6 3.3499 -13.2197 -0.0057 21 6 4.7190 -12.9550 -0.0117 22 6 5.6160 -14.0119 -0.0111 23 7 5.2083 -15.2630 -0.0164 24 6 3.9245 -15.5788 -0.0164 25 7 3.2208 -16.7568 -0.0205 26 1 3.6042 -17.6478 -0.0249 27 7 1.9640 -16.4760 -0.0186 28 7 1.7590 -15.2055 -0.0141 29 6 2.9421 -14.5680 -0.0122 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3907 0.0005 32 1 0.6179 -4.9209 -0.8897 33 1 0.6160 -4.9205 0.8903 34 1 2.8336 -5.9125 -0.7792 35 1 0.8733 -7.3455 -0.8884 36 1 0.8725 -7.3450 0.8916 37 1 3.1469 -8.3321 0.8936 38 1 3.1483 -8.3329 -0.8864 39 1 1.1688 -9.8269 -0.8863 40 1 1.1680 -9.8255 0.8937 41 1 3.7233 -10.6369 0.0043 42 1 5.0772 -11.9361 -0.0129 43 1 6.6756 -13.8034 -0.0114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162285722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:10 Heat of formation + Delta-G solvation = 27.027216 kcal Electronic energy + Delta-G solvation = -27619.485100 eV Core-core repulsion = 23314.729621 eV Total energy + Delta-G solvation = -4304.755479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.55630 -41.12518 -40.13050 -39.74670 -37.63145 -36.14635 -35.67359 -35.35926 -33.49364 -33.22530 -32.06352 -31.85318 -28.66686 -27.03699 -26.19282 -24.99885 -24.81843 -23.79636 -22.57765 -22.06424 -21.04950 -20.03529 -19.85289 -19.64344 -18.57452 -17.82402 -17.78474 -17.22351 -17.05262 -16.65667 -16.51087 -16.35880 -15.96100 -15.75164 -15.51401 -15.22329 -15.04798 -14.65081 -14.39855 -14.21468 -13.94364 -13.54084 -13.51613 -13.35318 -13.17518 -12.84171 -12.82242 -12.69827 -12.66634 -12.40721 -12.38122 -12.10680 -11.79828 -11.49370 -11.47638 -10.67200 -10.44800 -10.32854 -10.32409 -10.08949 -9.99782 -9.29747 -8.44630 -5.93573 -1.09643 -0.21552 0.95619 1.10665 1.41899 1.43859 1.54769 1.70923 1.84624 2.07567 2.31238 2.52399 2.67002 2.96246 3.14034 3.22923 3.30367 3.38930 3.56144 3.71978 4.04709 4.11724 4.15866 4.21784 4.33617 4.34616 4.39097 4.51775 4.60859 4.62597 4.69920 4.75852 4.83794 5.16586 5.19250 5.24433 5.37914 5.42636 5.62656 5.90894 6.12156 6.40611 6.41689 6.47426 6.61945 6.97900 7.08987 7.14295 7.58435 8.13266 8.72459 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.037592 B = 0.001275 C = 0.001235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.661160 B =21959.012583 C =22670.580366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.622 6.622 12 C 0.064 3.936 13 N -0.681 5.681 14 C 0.060 3.940 15 C -0.114 4.114 16 C 0.126 3.874 17 N -0.700 5.700 18 C 0.549 3.451 19 O -0.555 6.555 20 C -0.040 4.040 21 C -0.105 4.105 22 C 0.175 3.825 23 N -0.465 5.465 24 C 0.206 3.794 25 N -0.383 5.383 26 H 0.474 0.526 27 N -0.014 5.014 28 N -0.262 5.262 29 C -0.028 4.028 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.346 0.654 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.420 0.580 42 H 0.205 0.795 43 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.330 -31.200 -1.027 33.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.069 4.069 13 N -0.314 5.314 14 C -0.069 4.069 15 C -0.152 4.152 16 C 0.002 3.998 17 N -0.354 5.354 18 C 0.335 3.665 19 O -0.433 6.433 20 C -0.056 4.056 21 C -0.128 4.128 22 C 0.002 3.998 23 N -0.179 5.179 24 C -0.037 4.037 25 N -0.117 5.117 26 H 0.326 0.674 27 N 0.004 4.996 28 N -0.136 5.136 29 C -0.158 4.158 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.165 0.835 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.259 0.741 42 H 0.222 0.778 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 10.230 -32.471 -0.347 34.046 hybrid contribution 0.042 1.237 -0.859 1.507 sum 10.273 -31.234 -1.207 32.902 Atomic orbital electron populations 1.69670 1.06884 1.29345 1.50273 1.26043 0.96514 1.02438 0.96230 0.84985 0.77747 0.76601 0.78992 1.19595 1.19642 1.19683 1.19659 0.92784 0.84053 1.50053 0.90152 1.41944 1.09344 1.04771 1.65041 1.20892 0.88293 0.86162 0.82172 1.90481 1.15747 1.87973 1.56666 1.21532 0.94106 0.88196 1.03044 1.60048 1.19055 1.00806 1.51489 1.21919 0.95981 0.87462 1.01524 1.21589 0.98298 0.90749 1.04596 1.21270 0.91272 0.84935 1.02321 1.45676 1.11787 1.04065 1.73903 1.18214 0.87753 0.83375 0.77198 1.90871 1.18527 1.84285 1.49622 1.19702 0.95342 0.89208 1.01385 1.23017 0.89409 1.04727 0.95610 1.23881 1.03139 0.83625 0.89138 1.66507 1.12369 1.24796 1.14253 1.19986 0.91624 0.86579 1.05544 1.44735 1.03684 1.09650 1.53592 0.67424 1.78177 0.97483 1.11222 1.12725 1.75514 1.23313 0.97071 1.17749 1.20549 0.91149 0.96012 1.08080 0.91334 0.77012 0.91641 0.87958 0.83476 0.94195 0.90476 0.89635 0.89761 0.91756 0.91746 0.74121 0.77810 0.74810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 42.36 29.55 68.60 2.03 44.39 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.34 -18.88 9.68 84.04 0.81 -18.06 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.07 5.29 -306.99 -1.62 -30.69 16 10 C 0.44 20.29 7.82 87.66 0.69 20.98 16 11 O -0.62 -33.47 15.78 -3.07 -0.05 -33.52 16 12 C 0.06 2.08 6.17 85.56 0.53 2.61 16 13 N -0.68 -19.27 6.13 -517.92 -3.17 -22.44 16 14 C 0.06 1.17 5.69 86.30 0.49 1.66 16 15 C -0.11 -1.55 5.59 30.59 0.17 -1.38 16 16 C 0.13 1.86 5.67 86.38 0.49 2.35 16 17 N -0.70 -8.51 5.51 -465.93 -2.57 -11.08 16 18 C 0.55 10.93 7.79 86.80 0.68 11.60 16 19 O -0.56 -17.08 16.27 -3.85 -0.06 -17.14 16 20 C -0.04 -0.62 5.92 -19.79 -0.12 -0.74 16 21 C -0.10 -0.40 9.61 22.65 0.22 -0.18 16 22 C 0.18 0.48 11.14 84.82 0.95 1.43 16 23 N -0.47 -4.84 10.35 -193.10 -2.00 -6.84 16 24 C 0.21 3.23 8.56 134.17 1.15 4.38 16 25 N -0.38 -5.21 7.06 -55.48 -0.39 -5.61 16 26 H 0.47 2.27 8.96 -219.83 -1.97 0.30 16 27 N -0.01 -0.29 13.29 37.02 0.49 0.21 16 28 N -0.26 -7.04 11.92 -51.94 -0.62 -7.66 16 29 C -0.03 -0.59 6.97 40.06 0.28 -0.31 16 30 H 0.28 13.98 8.31 -92.70 -0.77 13.20 16 31 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.35 10.05 8.43 -89.69 -0.76 9.29 16 35 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.42 1.59 6.62 -92.71 -0.61 0.98 16 42 H 0.21 -1.18 6.53 -2.91 -0.02 -1.19 16 43 H 0.24 -1.76 8.06 -2.91 -0.02 -1.78 16 Total: -1.00 -87.92 378.74 -3.83 -91.75 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -2.94 Total: 23.61 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 6.80 Total: 24.14 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -9.60 Total: -133.23 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -0.11 Total: -50.66 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -87.92 -3.83 -91.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162285722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.776 kcal (2) G-P(sol) polarization free energy of solvation -87.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds