Wall clock time and date at job start Wed Apr 1 2020 05:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00200 * 2 1 4 4 H 1.48493 * 109.47356 * 270.00099 * 3 2 1 5 5 H 1.48505 * 109.46782 * 29.99934 * 3 2 1 6 6 H 1.48504 * 109.47148 * 149.99936 * 3 2 1 7 7 C 1.38803 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99717 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00277 * 180.02562 * 7 2 1 10 10 C 1.80993 * 100.00065 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47086 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00058 * 179.97438 * 11 10 9 14 14 C 1.47405 * 125.58919 * 359.97438 * 13 11 10 15 15 C 1.54863 * 104.81863 * 204.39819 * 14 13 11 16 16 C 1.55172 * 101.72480 * 322.76899 * 15 14 13 17 17 H 1.09005 * 113.24305 * 158.94985 * 16 15 14 18 18 C 1.53746 * 108.29556 * 285.33741 * 16 15 14 19 19 N 1.47012 * 108.07402 * 124.46762 * 18 16 15 20 20 C 1.46898 * 111.00338 * 123.96297 * 19 18 16 21 21 C 1.50707 * 109.46995 * 169.99981 * 20 19 18 22 22 C 1.38227 * 119.62059 * 95.01860 * 21 20 19 23 23 C 1.38627 * 119.15702 * 179.74122 * 22 21 20 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61137 * 274.99289 * 21 20 19 27 27 C 1.47136 * 109.23953 * 1.23338 * 19 18 16 28 28 C 1.46709 * 125.59170 * 180.02562 * 13 11 10 29 29 H 1.08997 * 111.49704 * 56.17920 * 28 13 11 30 30 H 0.96992 * 119.99981 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47273 * 60.00136 * 10 9 7 32 32 H 1.08996 * 109.47403 * 299.99953 * 10 9 7 33 33 H 1.09007 * 110.36937 * 85.57052 * 14 13 11 34 34 H 1.08993 * 110.46422 * 323.28540 * 14 13 11 35 35 H 1.09007 * 110.98071 * 204.65705 * 15 14 13 36 36 H 1.09004 * 110.97503 * 80.87962 * 15 14 13 37 37 H 1.08996 * 109.75280 * 4.80163 * 18 16 15 38 38 H 1.08998 * 109.75090 * 244.12251 * 18 16 15 39 39 H 1.08997 * 109.47637 * 49.99437 * 20 19 18 40 40 H 1.09003 * 109.46634 * 289.99434 * 20 19 18 41 41 H 1.07998 * 120.41916 * 359.95342 * 22 21 20 42 42 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 43 43 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 44 44 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 45 45 H 1.08997 * 109.98775 * 101.41190 * 27 19 18 46 46 H 1.08997 * 109.99371 * 222.73771 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7723 -1.2021 0.0001 10 6 4.0865 -2.9846 -0.0001 11 6 5.5730 -3.2326 -0.0002 12 8 6.3440 -2.2964 0.0003 13 7 6.0456 -4.4948 0.0001 14 6 5.2239 -5.7185 0.0011 15 6 6.1353 -6.8072 0.6195 16 6 7.5216 -6.4271 0.0351 17 1 8.3558 -6.8278 0.6111 18 6 7.5523 -6.8436 -1.4445 19 7 7.8906 -5.6579 -2.2452 20 6 9.0755 -5.9052 -3.0775 21 6 9.2472 -4.7721 -4.0562 22 6 10.0903 -3.7220 -3.7446 23 6 10.2453 -2.6875 -4.6543 24 6 9.5355 -2.7430 -5.8443 25 6 8.7113 -3.8253 -6.0868 26 7 8.5917 -4.7943 -5.2001 27 6 8.1062 -4.5122 -1.3476 28 6 7.4623 -4.8761 0.0005 29 1 7.9945 -4.4347 0.8432 30 1 -0.4850 0.8400 -0.0004 31 1 3.6440 -3.4314 -0.8904 32 1 3.6433 -3.4318 0.8895 33 1 4.9462 -5.9900 -1.0175 34 1 4.3322 -5.5783 0.6120 35 1 5.8329 -7.8018 0.2915 36 1 6.1389 -6.7411 1.7075 37 1 6.5740 -7.2216 -1.7412 38 1 8.3064 -7.6163 -1.5941 39 1 8.9478 -6.8402 -3.6229 40 1 9.9583 -5.9730 -2.4417 41 1 10.6242 -3.7095 -2.8059 42 1 10.9001 -1.8559 -4.4394 43 1 9.6293 -1.9527 -6.5744 44 1 8.1583 -3.8781 -7.0129 45 1 9.1741 -4.3382 -1.2156 46 1 7.6312 -3.6217 -1.7593 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186917359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:54 Heat of formation + Delta-G solvation = 20.973603 kcal Electronic energy + Delta-G solvation = -28053.366184 eV Core-core repulsion = 24262.348664 eV Total energy + Delta-G solvation = -3791.017520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.05127 -40.20120 -38.27784 -36.09060 -32.88618 -32.51117 -32.41073 -31.64236 -30.45682 -28.75138 -27.34279 -26.23427 -25.58115 -23.71203 -23.05698 -22.56491 -21.26877 -20.50084 -19.05893 -17.68887 -17.25816 -16.86564 -16.42900 -16.17592 -15.94567 -15.64639 -15.09818 -14.91918 -14.72276 -14.47554 -13.94455 -13.81339 -13.79295 -13.75562 -13.33773 -13.08653 -12.95758 -12.75552 -12.55411 -12.38328 -12.13208 -11.83979 -11.71898 -11.61635 -11.27879 -11.23201 -11.14197 -10.99006 -10.94755 -10.56273 -10.03441 -9.83547 -9.57476 -9.45329 -9.22740 -8.97977 -8.62431 -8.46762 -8.40539 -6.88750 -6.26559 -3.97769 0.90097 1.12421 2.72050 2.99660 3.22522 3.35042 3.44754 3.52088 3.62754 3.94063 3.96657 4.11547 4.24156 4.35323 4.43545 4.55324 4.67522 4.73727 4.78611 4.89819 4.92899 4.94418 4.95639 5.11335 5.12516 5.15903 5.22765 5.25901 5.29673 5.40864 5.45082 5.55296 5.57320 5.59860 5.67466 5.76230 5.85715 5.91084 5.93556 5.98154 6.00359 6.06806 6.45815 6.49632 6.78073 6.80311 7.64157 7.86639 7.96682 8.44277 8.49206 9.19772 10.82802 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.003181 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.508602 B = 8798.816416 C =10716.208998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.117 4.117 11 C 0.550 3.450 12 O -0.519 6.519 13 N -0.611 5.611 14 C 0.100 3.900 15 C -0.123 4.123 16 C -0.120 4.120 17 H 0.102 0.898 18 C 0.052 3.948 19 N -0.517 5.517 20 C 0.103 3.897 21 C 0.137 3.863 22 C -0.166 4.166 23 C -0.074 4.074 24 C -0.175 4.175 25 C 0.101 3.899 26 N -0.466 5.466 27 C 0.039 3.961 28 C 0.136 3.864 29 H 0.090 0.910 30 H 0.270 0.730 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.155 0.845 45 H 0.052 0.948 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.823 -16.449 -5.242 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.667 4.667 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.267 4.267 11 C 0.338 3.662 12 O -0.394 6.394 13 N -0.348 5.348 14 C -0.023 4.023 15 C -0.161 4.161 16 C -0.140 4.140 17 H 0.121 0.879 18 C -0.075 4.075 19 N -0.241 5.241 20 C -0.025 4.025 21 C -0.002 4.002 22 C -0.186 4.186 23 C -0.100 4.100 24 C -0.195 4.195 25 C -0.057 4.057 26 N -0.175 5.175 27 C -0.089 4.089 28 C 0.031 3.969 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.173 0.827 45 H 0.070 0.930 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 21.789 -15.470 -5.763 27.337 hybrid contribution 0.344 0.364 0.594 0.777 sum 22.133 -15.106 -5.169 27.291 Atomic orbital electron populations 1.69937 1.05903 1.27725 1.48203 1.24701 0.94430 0.98910 0.93204 0.86742 0.81901 0.83329 0.79930 1.19221 1.19946 1.15945 1.22316 0.88256 0.97528 1.58633 0.89404 1.84752 1.09289 1.00182 1.97409 1.23247 0.93788 1.04074 1.05593 1.19944 0.90496 0.80621 0.75102 1.90692 1.58835 1.41313 1.48544 1.48288 1.06032 1.05398 1.75046 1.22340 0.94619 0.83930 1.01405 1.22829 0.93614 0.98833 1.00865 1.23275 0.99079 0.94409 0.97235 0.87942 1.22773 1.02215 0.92326 0.90188 1.63024 1.34433 1.04192 1.22431 1.21140 0.91882 0.96207 0.93314 1.21012 0.91923 0.94814 0.92446 1.21973 1.00901 0.95242 1.00516 1.21572 0.97426 0.97749 0.93256 1.22168 0.98711 1.00067 0.98531 1.22783 0.95418 0.89511 0.97951 1.67466 1.20149 1.27715 1.02202 1.23097 0.99098 0.95123 0.91605 1.22112 0.83606 0.93829 0.97334 0.89195 0.91966 0.88600 0.88655 0.90843 0.90208 0.89506 0.90398 0.89706 0.92425 0.88952 0.93096 0.85217 0.84857 0.84807 0.82727 0.93005 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.90 13.97 55.49 0.78 -26.12 16 2 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 3 Si 0.86 22.11 27.74 -169.99 -4.72 17.40 16 4 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 7 C -0.52 -15.24 10.04 30.94 0.31 -14.93 16 8 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 9 S -0.14 -3.72 18.55 -107.50 -1.99 -5.71 16 10 C -0.12 -2.38 5.16 36.01 0.19 -2.20 16 11 C 0.55 10.41 7.49 -10.98 -0.08 10.33 16 12 O -0.52 -11.55 15.57 5.55 0.09 -11.47 16 13 N -0.61 -8.69 3.01 -162.28 -0.49 -9.17 16 14 C 0.10 1.08 6.23 -2.56 -0.02 1.07 16 15 C -0.12 -0.92 6.30 -24.60 -0.16 -1.08 16 16 C -0.12 -0.95 4.25 -87.89 -0.37 -1.32 16 17 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 18 C 0.05 0.43 6.06 -3.37 -0.02 0.41 16 19 N -0.52 -5.69 5.11 -234.79 -1.20 -6.89 16 20 C 0.10 0.98 4.83 -4.97 -0.02 0.96 16 21 C 0.14 1.56 5.89 -82.58 -0.49 1.08 16 22 C -0.17 -1.69 8.98 -39.44 -0.35 -2.04 16 23 C -0.07 -0.70 10.18 -39.28 -0.40 -1.10 16 24 C -0.17 -1.64 10.11 -39.44 -0.40 -2.04 16 25 C 0.10 1.08 11.18 -17.55 -0.20 0.88 16 26 N -0.47 -5.95 10.27 -9.47 -0.10 -6.05 16 27 C 0.04 0.48 5.45 -3.29 -0.02 0.46 16 28 C 0.14 1.59 3.65 -66.22 -0.24 1.35 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.10 1.89 8.14 -51.92 -0.42 1.47 16 32 H 0.10 1.81 7.84 -51.92 -0.41 1.41 16 33 H 0.07 0.80 7.49 -51.92 -0.39 0.41 16 34 H 0.08 0.85 7.46 -51.93 -0.39 0.46 16 35 H 0.09 0.49 7.96 -51.93 -0.41 0.07 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.73 6.78 -51.93 -0.35 0.38 16 38 H 0.06 0.37 7.53 -51.93 -0.39 -0.02 16 39 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 40 H 0.05 0.39 7.77 -51.93 -0.40 -0.02 16 41 H 0.13 1.07 7.58 -52.49 -0.40 0.68 16 42 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.05 0.55 6.72 -51.93 -0.35 0.20 16 46 H 0.09 1.49 7.22 -51.93 -0.37 1.12 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -36.10 381.93 -11.06 -47.16 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.82 Total: 0.53 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.37 Total: -5.41 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -1.01 Total: -48.24 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.72 Total: 17.40 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.10 -11.06 -47.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186917359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.130 kcal (2) G-P(sol) polarization free energy of solvation -36.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds