Wall clock time and date at job start Wed Apr 1 2020 05:06:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31414 * 1
3 3 Si 1.86795 * 120.00105 * 2 1
4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1
5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1
6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1
7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1
9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1
10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2
11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7
12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7
13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9
14 14 C 1.48532 * 111.00521 * 52.59789 * 13 12 10
15 15 C 1.54935 * 103.23120 * 159.71906 * 14 13 12
16 16 H 1.09011 * 110.87113 * 81.01934 * 15 14 13
17 17 O 1.42895 * 110.72938 * 204.22719 * 15 14 13
18 18 C 1.54592 * 102.92439 * 322.59281 * 15 14 13
19 19 H 1.09004 * 110.30956 * 263.03869 * 18 15 14
20 20 N 1.46497 * 110.31088 * 140.86784 * 18 15 14
21 21 C 1.34776 * 119.99715 * 157.83160 * 20 18 15
22 22 O 1.21281 * 120.00469 * 359.97438 * 21 20 18
23 23 C 1.50706 * 119.99716 * 180.02562 * 21 20 18
24 24 H 1.08996 * 112.85473 * 48.79965 * 23 21 20
25 25 C 1.53782 * 113.60941 * 277.49359 * 23 21 20
26 26 C 1.53788 * 87.07837 * 220.02061 * 25 23 21
27 27 C 1.53783 * 87.08306 * 25.43458 * 26 25 23
28 28 F 1.39902 * 113.61363 * 220.02154 * 27 26 25
29 29 F 1.39894 * 113.61516 * 89.11399 * 27 26 25
30 30 C 1.47902 * 111.00335 * 169.99982 * 13 12 10
31 31 H 0.96999 * 119.99863 * 0.02562 * 1 2 3
32 32 H 0.97001 * 119.99681 * 359.97438 * 9 7 2
33 33 H 1.09003 * 109.47112 * 299.99065 * 12 10 9
34 34 H 1.08993 * 109.47916 * 59.99687 * 12 10 9
35 35 H 1.08996 * 110.66766 * 278.16308 * 14 13 12
36 36 H 1.09006 * 110.66183 * 41.29019 * 14 13 12
37 37 H 0.96701 * 114.00229 * 293.51423 * 17 15 14
38 38 H 0.97003 * 120.00180 * 337.83002 * 20 18 15
39 39 H 1.08999 * 113.61666 * 334.56448 * 25 23 21
40 40 H 1.08993 * 113.61580 * 105.47427 * 25 23 21
41 41 H 1.09000 * 113.61455 * 270.88466 * 26 25 23
42 42 H 1.08997 * 113.68840 * 139.99430 * 26 25 23
43 43 H 1.09004 * 109.91425 * 333.50442 * 30 13 12
44 44 H 1.08994 * 109.92051 * 94.79797 * 30 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 2.4957 2.0464 -1.4000
5 1 1.4456 2.6527 0.6999
6 1 3.5457 1.4401 0.7001
7 6 2.0089 -1.2034 0.0005
8 1 3.0889 -1.2034 0.0010
9 7 1.3233 -2.3907 0.0005
10 6 1.9973 -3.5579 0.0067
11 8 3.2102 -3.5580 0.0071
12 6 1.2437 -4.8629 0.0129
13 7 2.1982 -5.9795 0.0184
14 6 3.1843 -5.8316 1.1192
15 6 3.7282 -7.2706 1.3039
16 1 4.4929 -7.4951 0.5601
17 8 4.2418 -7.4515 2.6250
18 6 2.4736 -8.1457 1.0800
19 1 2.0240 -8.4141 2.0360
20 7 2.8229 -9.3515 0.3248
21 6 2.0339 -10.4419 0.3938
22 8 1.0350 -10.4252 1.0814
23 6 2.3935 -11.6825 -0.3827
24 1 3.4334 -11.9798 -0.2477
25 6 1.9496 -11.6383 -1.8543
26 6 1.5618 -13.1185 -1.6999
27 6 1.3939 -12.8364 -0.1975
28 9 1.8707 -13.8648 0.6224
29 9 0.1075 -12.4127 0.1527
30 6 1.5091 -7.2648 0.2643
31 1 -0.4850 0.8400 -0.0004
32 1 0.3533 -2.3906 0.0005
33 1 0.6167 -4.9162 0.9030
34 1 0.6174 -4.9252 -0.8769
35 1 3.9854 -5.1517 0.8294
36 1 2.6952 -5.4855 2.0298
37 1 5.0295 -6.9242 2.8164
38 1 3.6220 -9.3650 -0.2250
39 1 1.0991 -10.9807 -2.0343
40 1 2.7695 -11.4724 -2.5530
41 1 2.3745 -13.8087 -1.9265
42 1 0.6306 -13.3818 -2.2015
43 1 0.5940 -7.0930 0.8310
44 1 1.2764 -7.7488 -0.6842
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001194023461.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:06:40
Heat of formation + Delta-G solvation = -175.637547 kcal
Electronic energy + Delta-G solvation = -30862.764415 eV
Core-core repulsion = 26066.238795 eV
Total energy + Delta-G solvation = -4796.525620 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.149 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-49.03899 -47.35893 -40.54870 -39.34193 -37.99809 -37.28729 -35.80794 -34.57113
-33.86431 -31.37685 -30.38766 -28.40187 -27.44185 -26.20881 -25.44026 -24.24777
-21.97993 -21.50830 -20.64409 -20.26491 -19.32642 -18.44037 -17.93929 -17.70695
-17.59246 -16.74405 -16.37538 -16.25416 -15.80087 -15.26595 -15.08220 -14.88432
-14.77596 -14.50088 -14.17608 -14.01784 -13.98843 -13.77938 -13.58215 -13.32831
-13.18754 -13.05988 -12.64479 -12.50686 -12.31177 -12.14282 -11.89340 -11.74643
-11.66889 -11.59099 -11.36827 -11.15174 -11.04423 -10.66612 -10.42679 -10.27922
-10.21619 -9.88016 -9.54546 -9.36174 -8.48648 -8.10673 -7.98971 -6.47498
-3.88829 2.23268 2.68047 3.10005 3.13527 3.22935 3.27873 3.27981
3.76438 3.82273 3.84228 3.89848 3.92471 4.09839 4.32254 4.40947
4.55092 4.76087 4.83305 4.95076 4.96216 5.00789 5.08178 5.10346
5.18013 5.19634 5.32031 5.37623 5.58376 5.65082 5.75229 5.77913
5.84351 6.05855 6.18147 6.25985 6.44680 6.98846 7.11389 7.19528
7.49438 7.53439 7.91806 7.99052 8.54125 9.11135 9.46723 9.97391
10.69962
Molecular weight = 347.15amu
Principal moments of inertia in cm(-1)
A = 0.024805 B = 0.001999 C = 0.001929
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1128.535306 B =14007.083739 C =14513.779154
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.023 3.977
3 Si 0.931 3.069
4 H -0.277 1.277
5 H -0.283 1.283
6 H -0.270 1.270
7 C -0.301 4.301
8 H 0.104 0.896
9 N -0.559 5.559
10 C 0.441 3.559
11 O -0.584 6.584
12 C 0.035 3.965
13 N -0.490 5.490
14 C 0.010 3.990
15 C 0.091 3.909
16 H 0.076 0.924
17 O -0.563 6.563
18 C 0.143 3.857
19 H 0.104 0.896
20 N -0.712 5.712
21 C 0.522 3.478
22 O -0.518 6.518
23 C -0.170 4.170
24 H 0.140 0.860
25 C -0.118 4.118
26 C -0.165 4.165
27 C 0.280 3.720
28 F -0.190 7.190
29 F -0.157 7.157
30 C 0.027 3.973
31 H 0.272 0.728
32 H 0.393 0.607
33 H 0.052 0.948
34 H 0.093 0.907
35 H 0.126 0.874
36 H 0.050 0.950
37 H 0.385 0.615
38 H 0.402 0.598
39 H 0.101 0.899
40 H 0.101 0.899
41 H 0.115 0.885
42 H 0.100 0.900
43 H 0.056 0.944
44 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.048 -24.113 -3.451 24.876
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.540 5.540
2 C -0.179 4.179
3 Si 0.758 3.242
4 H -0.203 1.203
5 H -0.209 1.209
6 H -0.194 1.194
7 C -0.430 4.430
8 H 0.122 0.878
9 N -0.195 5.195
10 C 0.227 3.773
11 O -0.470 6.470
12 C -0.096 4.096
13 N -0.215 5.215
14 C -0.118 4.118
15 C 0.031 3.969
16 H 0.093 0.907
17 O -0.368 6.368
18 C 0.037 3.963
19 H 0.122 0.878
20 N -0.364 5.364
21 C 0.306 3.694
22 O -0.393 6.393
23 C -0.192 4.192
24 H 0.158 0.842
25 C -0.156 4.156
26 C -0.203 4.203
27 C 0.243 3.757
28 F -0.170 7.170
29 F -0.138 7.138
30 C -0.103 4.103
31 H 0.082 0.918
32 H 0.226 0.774
33 H 0.070 0.930
34 H 0.111 0.889
35 H 0.143 0.857
36 H 0.068 0.932
37 H 0.233 0.767
38 H 0.237 0.763
39 H 0.119 0.881
40 H 0.119 0.881
41 H 0.134 0.866
42 H 0.118 0.882
43 H 0.074 0.926
44 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 4.697 -24.339 -3.359 25.015
hybrid contribution 0.006 1.248 0.635 1.401
sum 4.703 -23.091 -2.724 23.722
Atomic orbital electron populations
1.69613 1.05975 1.28304 1.50126 1.25292 0.95650 0.99826 0.97154
0.85840 0.79197 0.80714 0.78426 1.20345 1.20900 1.19411 1.19694
0.93350 0.82128 1.47854 0.87844 1.41858 1.09281 1.04589 1.63755
1.19651 0.88302 0.84615 0.84718 1.90411 1.13708 1.86736 1.56105
1.22137 0.94515 0.91031 1.01966 1.64593 1.13440 1.00346 1.43157
1.24136 0.98615 0.95855 0.93166 1.23017 0.94536 0.94804 0.84534
0.90666 1.86462 1.49252 1.70014 1.31079 1.21734 0.94869 0.83894
0.95766 0.87759 1.45966 1.28143 1.12919 1.49328 1.20018 0.83666
0.83945 0.81754 1.90814 1.25625 1.83067 1.39764 1.24078 1.02655
0.94151 0.98338 0.84194 1.22785 1.03341 0.96372 0.93105 1.24079
1.05346 0.98782 0.92048 1.21743 0.79916 0.84634 0.89425 1.93023
1.87623 1.60532 1.75865 1.93115 1.37898 1.89617 1.93157 1.23355
0.96051 0.90919 0.99934 0.91760 0.77371 0.92999 0.88935 0.85665
0.93204 0.76739 0.76271 0.88069 0.88071 0.86628 0.88155 0.92610
0.89716
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16
2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16
3 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16
4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16
5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16
6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16
7 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16
8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16
9 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16
10 C 0.44 10.03 7.49 -10.99 -0.08 9.95 16
11 O -0.58 -14.70 13.09 5.55 0.07 -14.63 16
12 C 0.04 0.62 5.52 -4.98 -0.03 0.59 16
13 N -0.49 -7.83 5.26 -231.89 -1.22 -9.05 16
14 C 0.01 0.16 5.02 -1.90 -0.01 0.15 16
15 C 0.09 1.11 4.15 -24.87 -0.10 1.01 16
16 H 0.08 0.79 7.74 -51.92 -0.40 0.39 16
17 O -0.56 -6.73 13.40 -35.23 -0.47 -7.20 16
18 C 0.14 1.79 3.06 -66.57 -0.20 1.58 16
19 H 0.10 1.55 7.58 -51.93 -0.39 1.15 16
20 N -0.71 -6.98 5.03 -52.49 -0.26 -7.25 16
21 C 0.52 5.81 7.30 -10.98 -0.08 5.73 16
22 O -0.52 -8.13 14.45 5.56 0.08 -8.05 16
23 C -0.17 -1.25 4.04 -90.95 -0.37 -1.61 16
24 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16
25 C -0.12 -0.59 7.61 -25.91 -0.20 -0.78 16
26 C -0.16 -0.82 7.87 -25.91 -0.20 -1.02 16
27 C 0.28 2.59 3.02 -25.91 -0.08 2.51 16
28 F -0.19 -2.00 17.41 2.25 0.04 -1.96 16
29 F -0.16 -2.03 15.20 2.25 0.03 -1.99 16
30 C 0.03 0.36 6.49 -2.75 -0.02 0.34 16
31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16
32 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16
33 H 0.05 0.86 7.81 -51.93 -0.41 0.45 16
34 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16
35 H 0.13 2.28 5.97 -51.93 -0.31 1.97 16
36 H 0.05 0.85 8.02 -51.93 -0.42 0.43 16
37 H 0.38 3.12 9.12 45.56 0.42 3.53 16
38 H 0.40 2.78 8.35 -40.82 -0.34 2.44 16
39 H 0.10 0.62 8.09 -51.93 -0.42 0.20 16
40 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16
41 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16
42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16
43 H 0.06 0.78 7.57 -51.93 -0.39 0.39 16
44 H 0.08 1.08 7.92 -51.93 -0.41 0.67 16
LS Contribution 372.02 15.07 5.61 5.61
Total: -1.00 -34.58 372.02 -7.11 -41.70
By element:
Atomic # 1 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.90 kcal
Atomic # 6 Polarization: 12.26 SS G_CDS: -1.61 Total: 10.65 kcal
Atomic # 7 Polarization: -52.81 SS G_CDS: -0.82 Total: -53.63 kcal
Atomic # 8 Polarization: -29.57 SS G_CDS: -0.32 Total: -29.89 kcal
Atomic # 9 Polarization: -4.02 SS G_CDS: 0.07 Total: -3.95 kcal
Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -34.58 -7.11 -41.70 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001194023461.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -133.942 kcal
(2) G-P(sol) polarization free energy of solvation -34.581 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.523 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal
(6) G-S(sol) free energy of system = (1) + (5) -175.638 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds