Wall clock time and date at job start Wed Apr 1 2020 05:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.48532 * 111.00521 * 52.59789 * 13 12 10 15 15 C 1.54935 * 103.23120 * 159.71906 * 14 13 12 16 16 H 1.09011 * 110.87113 * 81.01934 * 15 14 13 17 17 O 1.42895 * 110.72938 * 204.22719 * 15 14 13 18 18 C 1.54592 * 102.92439 * 322.59281 * 15 14 13 19 19 H 1.09004 * 110.30956 * 263.03869 * 18 15 14 20 20 N 1.46497 * 110.31088 * 140.86784 * 18 15 14 21 21 C 1.34776 * 119.99715 * 157.83160 * 20 18 15 22 22 O 1.21281 * 120.00469 * 359.97438 * 21 20 18 23 23 C 1.50706 * 119.99716 * 180.02562 * 21 20 18 24 24 H 1.08996 * 112.85473 * 48.79965 * 23 21 20 25 25 C 1.53782 * 113.60941 * 277.49359 * 23 21 20 26 26 C 1.53788 * 87.07837 * 220.02061 * 25 23 21 27 27 C 1.53783 * 87.08306 * 25.43458 * 26 25 23 28 28 F 1.39902 * 113.61363 * 220.02154 * 27 26 25 29 29 F 1.39894 * 113.61516 * 89.11399 * 27 26 25 30 30 C 1.47902 * 111.00335 * 169.99982 * 13 12 10 31 31 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 34 34 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 35 35 H 1.08996 * 110.66766 * 278.16308 * 14 13 12 36 36 H 1.09006 * 110.66183 * 41.29019 * 14 13 12 37 37 H 0.96701 * 114.00229 * 293.51423 * 17 15 14 38 38 H 0.97003 * 120.00180 * 337.83002 * 20 18 15 39 39 H 1.08999 * 113.61666 * 334.56448 * 25 23 21 40 40 H 1.08993 * 113.61580 * 105.47427 * 25 23 21 41 41 H 1.09000 * 113.61455 * 270.88466 * 26 25 23 42 42 H 1.08997 * 113.68840 * 139.99430 * 26 25 23 43 43 H 1.09004 * 109.91425 * 333.50442 * 30 13 12 44 44 H 1.08994 * 109.92051 * 94.79797 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 3.1843 -5.8316 1.1192 15 6 3.7282 -7.2706 1.3039 16 1 4.4929 -7.4951 0.5601 17 8 4.2418 -7.4515 2.6250 18 6 2.4736 -8.1457 1.0800 19 1 2.0240 -8.4141 2.0360 20 7 2.8229 -9.3515 0.3248 21 6 2.0339 -10.4419 0.3938 22 8 1.0350 -10.4252 1.0814 23 6 2.3935 -11.6825 -0.3827 24 1 3.4334 -11.9798 -0.2477 25 6 1.9496 -11.6383 -1.8543 26 6 1.5618 -13.1185 -1.6999 27 6 1.3939 -12.8364 -0.1975 28 9 1.8707 -13.8648 0.6224 29 9 0.1075 -12.4127 0.1527 30 6 1.5091 -7.2648 0.2643 31 1 -0.4850 0.8400 -0.0004 32 1 0.3533 -2.3906 0.0005 33 1 0.6167 -4.9162 0.9030 34 1 0.6174 -4.9252 -0.8769 35 1 3.9854 -5.1517 0.8294 36 1 2.6952 -5.4855 2.0298 37 1 5.0295 -6.9242 2.8164 38 1 3.6220 -9.3650 -0.2250 39 1 1.0991 -10.9807 -2.0343 40 1 2.7695 -11.4724 -2.5530 41 1 2.3745 -13.8087 -1.9265 42 1 0.6306 -13.3818 -2.2015 43 1 0.5940 -7.0930 0.8310 44 1 1.2764 -7.7488 -0.6842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194023461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:40 Heat of formation + Delta-G solvation = -175.637547 kcal Electronic energy + Delta-G solvation = -30862.764415 eV Core-core repulsion = 26066.238795 eV Total energy + Delta-G solvation = -4796.525620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.03899 -47.35893 -40.54870 -39.34193 -37.99809 -37.28729 -35.80794 -34.57113 -33.86431 -31.37685 -30.38766 -28.40187 -27.44185 -26.20881 -25.44026 -24.24777 -21.97993 -21.50830 -20.64409 -20.26491 -19.32642 -18.44037 -17.93929 -17.70695 -17.59246 -16.74405 -16.37538 -16.25416 -15.80087 -15.26595 -15.08220 -14.88432 -14.77596 -14.50088 -14.17608 -14.01784 -13.98843 -13.77938 -13.58215 -13.32831 -13.18754 -13.05988 -12.64479 -12.50686 -12.31177 -12.14282 -11.89340 -11.74643 -11.66889 -11.59099 -11.36827 -11.15174 -11.04423 -10.66612 -10.42679 -10.27922 -10.21619 -9.88016 -9.54546 -9.36174 -8.48648 -8.10673 -7.98971 -6.47498 -3.88829 2.23268 2.68047 3.10005 3.13527 3.22935 3.27873 3.27981 3.76438 3.82273 3.84228 3.89848 3.92471 4.09839 4.32254 4.40947 4.55092 4.76087 4.83305 4.95076 4.96216 5.00789 5.08178 5.10346 5.18013 5.19634 5.32031 5.37623 5.58376 5.65082 5.75229 5.77913 5.84351 6.05855 6.18147 6.25985 6.44680 6.98846 7.11389 7.19528 7.49438 7.53439 7.91806 7.99052 8.54125 9.11135 9.46723 9.97391 10.69962 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.001999 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.535306 B =14007.083739 C =14513.779154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.301 4.301 8 H 0.104 0.896 9 N -0.559 5.559 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.035 3.965 13 N -0.490 5.490 14 C 0.010 3.990 15 C 0.091 3.909 16 H 0.076 0.924 17 O -0.563 6.563 18 C 0.143 3.857 19 H 0.104 0.896 20 N -0.712 5.712 21 C 0.522 3.478 22 O -0.518 6.518 23 C -0.170 4.170 24 H 0.140 0.860 25 C -0.118 4.118 26 C -0.165 4.165 27 C 0.280 3.720 28 F -0.190 7.190 29 F -0.157 7.157 30 C 0.027 3.973 31 H 0.272 0.728 32 H 0.393 0.607 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.050 0.950 37 H 0.385 0.615 38 H 0.402 0.598 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.048 -24.113 -3.451 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.195 5.195 10 C 0.227 3.773 11 O -0.470 6.470 12 C -0.096 4.096 13 N -0.215 5.215 14 C -0.118 4.118 15 C 0.031 3.969 16 H 0.093 0.907 17 O -0.368 6.368 18 C 0.037 3.963 19 H 0.122 0.878 20 N -0.364 5.364 21 C 0.306 3.694 22 O -0.393 6.393 23 C -0.192 4.192 24 H 0.158 0.842 25 C -0.156 4.156 26 C -0.203 4.203 27 C 0.243 3.757 28 F -0.170 7.170 29 F -0.138 7.138 30 C -0.103 4.103 31 H 0.082 0.918 32 H 0.226 0.774 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.143 0.857 36 H 0.068 0.932 37 H 0.233 0.767 38 H 0.237 0.763 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.134 0.866 42 H 0.118 0.882 43 H 0.074 0.926 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.697 -24.339 -3.359 25.015 hybrid contribution 0.006 1.248 0.635 1.401 sum 4.703 -23.091 -2.724 23.722 Atomic orbital electron populations 1.69613 1.05975 1.28304 1.50126 1.25292 0.95650 0.99826 0.97154 0.85840 0.79197 0.80714 0.78426 1.20345 1.20900 1.19411 1.19694 0.93350 0.82128 1.47854 0.87844 1.41858 1.09281 1.04589 1.63755 1.19651 0.88302 0.84615 0.84718 1.90411 1.13708 1.86736 1.56105 1.22137 0.94515 0.91031 1.01966 1.64593 1.13440 1.00346 1.43157 1.24136 0.98615 0.95855 0.93166 1.23017 0.94536 0.94804 0.84534 0.90666 1.86462 1.49252 1.70014 1.31079 1.21734 0.94869 0.83894 0.95766 0.87759 1.45966 1.28143 1.12919 1.49328 1.20018 0.83666 0.83945 0.81754 1.90814 1.25625 1.83067 1.39764 1.24078 1.02655 0.94151 0.98338 0.84194 1.22785 1.03341 0.96372 0.93105 1.24079 1.05346 0.98782 0.92048 1.21743 0.79916 0.84634 0.89425 1.93023 1.87623 1.60532 1.75865 1.93115 1.37898 1.89617 1.93157 1.23355 0.96051 0.90919 0.99934 0.91760 0.77371 0.92999 0.88935 0.85665 0.93204 0.76739 0.76271 0.88069 0.88071 0.86628 0.88155 0.92610 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 10 C 0.44 10.03 7.49 -10.99 -0.08 9.95 16 11 O -0.58 -14.70 13.09 5.55 0.07 -14.63 16 12 C 0.04 0.62 5.52 -4.98 -0.03 0.59 16 13 N -0.49 -7.83 5.26 -231.89 -1.22 -9.05 16 14 C 0.01 0.16 5.02 -1.90 -0.01 0.15 16 15 C 0.09 1.11 4.15 -24.87 -0.10 1.01 16 16 H 0.08 0.79 7.74 -51.92 -0.40 0.39 16 17 O -0.56 -6.73 13.40 -35.23 -0.47 -7.20 16 18 C 0.14 1.79 3.06 -66.57 -0.20 1.58 16 19 H 0.10 1.55 7.58 -51.93 -0.39 1.15 16 20 N -0.71 -6.98 5.03 -52.49 -0.26 -7.25 16 21 C 0.52 5.81 7.30 -10.98 -0.08 5.73 16 22 O -0.52 -8.13 14.45 5.56 0.08 -8.05 16 23 C -0.17 -1.25 4.04 -90.95 -0.37 -1.61 16 24 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 25 C -0.12 -0.59 7.61 -25.91 -0.20 -0.78 16 26 C -0.16 -0.82 7.87 -25.91 -0.20 -1.02 16 27 C 0.28 2.59 3.02 -25.91 -0.08 2.51 16 28 F -0.19 -2.00 17.41 2.25 0.04 -1.96 16 29 F -0.16 -2.03 15.20 2.25 0.03 -1.99 16 30 C 0.03 0.36 6.49 -2.75 -0.02 0.34 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 33 H 0.05 0.86 7.81 -51.93 -0.41 0.45 16 34 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.13 2.28 5.97 -51.93 -0.31 1.97 16 36 H 0.05 0.85 8.02 -51.93 -0.42 0.43 16 37 H 0.38 3.12 9.12 45.56 0.42 3.53 16 38 H 0.40 2.78 8.35 -40.82 -0.34 2.44 16 39 H 0.10 0.62 8.09 -51.93 -0.42 0.20 16 40 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.78 7.57 -51.93 -0.39 0.39 16 44 H 0.08 1.08 7.92 -51.93 -0.41 0.67 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -34.58 372.02 -7.11 -41.70 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.90 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -1.61 Total: 10.65 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.82 Total: -53.63 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.32 Total: -29.89 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.07 Total: -3.95 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.58 -7.11 -41.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194023461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.942 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds