Wall clock time and date at job start Wed Apr 1 2020 05:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.48532 * 111.00521 * 52.59789 * 13 12 10 15 15 C 1.54935 * 103.23120 * 159.71906 * 14 13 12 16 16 H 1.09011 * 110.87113 * 81.01934 * 15 14 13 17 17 O 1.42895 * 110.72938 * 204.22719 * 15 14 13 18 18 C 1.54592 * 102.92439 * 322.59281 * 15 14 13 19 19 H 1.09004 * 110.30956 * 263.03869 * 18 15 14 20 20 N 1.46497 * 110.31088 * 140.86784 * 18 15 14 21 21 C 1.34776 * 119.99715 * 157.83160 * 20 18 15 22 22 O 1.21281 * 120.00469 * 359.97438 * 21 20 18 23 23 C 1.50706 * 119.99716 * 180.02562 * 21 20 18 24 24 H 1.08996 * 112.85473 * 48.79965 * 23 21 20 25 25 C 1.53782 * 113.60941 * 277.49359 * 23 21 20 26 26 C 1.53788 * 87.07837 * 220.02061 * 25 23 21 27 27 C 1.53783 * 87.08306 * 25.43458 * 26 25 23 28 28 F 1.39902 * 113.61363 * 220.02154 * 27 26 25 29 29 F 1.39894 * 113.61516 * 89.11399 * 27 26 25 30 30 C 1.47902 * 111.00335 * 169.99982 * 13 12 10 31 31 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 34 34 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 35 35 H 1.08996 * 110.66766 * 278.16308 * 14 13 12 36 36 H 1.09006 * 110.66183 * 41.29019 * 14 13 12 37 37 H 0.96701 * 114.00229 * 293.51423 * 17 15 14 38 38 H 0.97003 * 120.00180 * 337.83002 * 20 18 15 39 39 H 1.08999 * 113.61666 * 334.56448 * 25 23 21 40 40 H 1.08993 * 113.61580 * 105.47427 * 25 23 21 41 41 H 1.09000 * 113.61455 * 270.88466 * 26 25 23 42 42 H 1.08997 * 113.68840 * 139.99430 * 26 25 23 43 43 H 1.09004 * 109.91425 * 333.50442 * 30 13 12 44 44 H 1.08994 * 109.92051 * 94.79797 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 3.1843 -5.8316 1.1192 15 6 3.7282 -7.2706 1.3039 16 1 4.4929 -7.4951 0.5601 17 8 4.2418 -7.4515 2.6250 18 6 2.4736 -8.1457 1.0800 19 1 2.0240 -8.4141 2.0360 20 7 2.8229 -9.3515 0.3248 21 6 2.0339 -10.4419 0.3938 22 8 1.0350 -10.4252 1.0814 23 6 2.3935 -11.6825 -0.3827 24 1 3.4334 -11.9798 -0.2477 25 6 1.9496 -11.6383 -1.8543 26 6 1.5618 -13.1185 -1.6999 27 6 1.3939 -12.8364 -0.1975 28 9 1.8707 -13.8648 0.6224 29 9 0.1075 -12.4127 0.1527 30 6 1.5091 -7.2648 0.2643 31 1 -0.4850 0.8400 -0.0004 32 1 0.3533 -2.3906 0.0005 33 1 0.6167 -4.9162 0.9030 34 1 0.6174 -4.9252 -0.8769 35 1 3.9854 -5.1517 0.8294 36 1 2.6952 -5.4855 2.0298 37 1 5.0295 -6.9242 2.8164 38 1 3.6220 -9.3650 -0.2250 39 1 1.0991 -10.9807 -2.0343 40 1 2.7695 -11.4724 -2.5530 41 1 2.3745 -13.8087 -1.9265 42 1 0.6306 -13.3818 -2.2015 43 1 0.5940 -7.0930 0.8310 44 1 1.2764 -7.7488 -0.6842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194023461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:39 Heat of formation + Delta-G solvation = -205.911907 kcal Electronic energy + Delta-G solvation = -30864.077209 eV Core-core repulsion = 26066.238795 eV Total energy + Delta-G solvation = -4797.838415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.77332 -48.12966 -41.52663 -40.59578 -39.45415 -37.99971 -36.94857 -36.01670 -35.39787 -33.33354 -31.60841 -29.45670 -28.51199 -27.47264 -26.01924 -25.86967 -23.01748 -22.50357 -21.64783 -21.13999 -20.90297 -19.89680 -19.17468 -18.62261 -18.40977 -17.81906 -17.56368 -17.14032 -16.89823 -16.68434 -16.33689 -16.14096 -15.99265 -15.74627 -15.36176 -15.27033 -14.95139 -14.66376 -14.62749 -14.38331 -14.36364 -13.92088 -13.84478 -13.78992 -13.53892 -13.45043 -13.04172 -12.93908 -12.77377 -12.61509 -12.43220 -12.42562 -12.14606 -12.13211 -11.82995 -11.69702 -11.47884 -11.19646 -10.78704 -10.37626 -10.14913 -10.02671 -9.48201 -8.47811 -5.96730 1.37541 1.41527 1.42058 1.54434 1.87872 2.00694 2.26680 2.49009 2.62018 2.76192 3.07042 3.18686 3.26482 3.30079 3.36971 3.42522 3.55932 3.75281 3.91930 3.96921 4.17837 4.25284 4.31303 4.34953 4.40277 4.47914 4.50145 4.52905 4.60288 4.73127 4.77694 4.80777 4.92591 5.08881 5.18308 5.34488 5.40261 5.69072 5.78055 6.01799 6.41419 6.57386 6.74513 7.10492 7.12222 7.52724 8.06868 8.69594 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.001999 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.535306 B =14007.083739 C =14513.779154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.330 4.330 8 H 0.084 0.916 9 N -0.572 5.572 10 C 0.442 3.558 11 O -0.609 6.609 12 C 0.044 3.956 13 N -0.494 5.494 14 C 0.011 3.989 15 C 0.109 3.891 16 H 0.102 0.898 17 O -0.573 6.573 18 C 0.148 3.852 19 H 0.080 0.920 20 N -0.697 5.697 21 C 0.517 3.483 22 O -0.571 6.571 23 C -0.162 4.162 24 H 0.175 0.825 25 C -0.108 4.108 26 C -0.145 4.145 27 C 0.246 3.754 28 F -0.203 7.203 29 F -0.187 7.187 30 C 0.032 3.968 31 H 0.277 0.723 32 H 0.395 0.605 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.030 0.970 37 H 0.401 0.599 38 H 0.420 0.580 39 H 0.086 0.914 40 H 0.138 0.862 41 H 0.145 0.855 42 H 0.105 0.895 43 H 0.049 0.951 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.457 -25.284 -5.037 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.102 0.898 9 N -0.209 5.209 10 C 0.229 3.771 11 O -0.496 6.496 12 C -0.088 4.088 13 N -0.219 5.219 14 C -0.117 4.117 15 C 0.048 3.952 16 H 0.120 0.880 17 O -0.381 6.381 18 C 0.042 3.958 19 H 0.098 0.902 20 N -0.349 5.349 21 C 0.304 3.696 22 O -0.449 6.449 23 C -0.184 4.184 24 H 0.192 0.808 25 C -0.145 4.145 26 C -0.183 4.183 27 C 0.209 3.791 28 F -0.184 7.184 29 F -0.168 7.168 30 C -0.097 4.097 31 H 0.087 0.913 32 H 0.229 0.771 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.048 0.952 37 H 0.252 0.748 38 H 0.259 0.741 39 H 0.105 0.895 40 H 0.156 0.844 41 H 0.163 0.837 42 H 0.123 0.877 43 H 0.068 0.932 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.140 -25.527 -4.965 26.720 hybrid contribution -0.411 1.546 1.182 1.989 sum 5.729 -23.981 -3.783 24.944 Atomic orbital electron populations 1.69683 1.06955 1.29328 1.50288 1.26086 0.96533 1.02586 0.96289 0.84901 0.77885 0.76739 0.78667 1.19574 1.19848 1.19531 1.19682 0.92790 0.83736 1.49776 0.89846 1.41938 1.09346 1.04773 1.64834 1.20518 0.88288 0.85704 0.82553 1.90407 1.15154 1.87482 1.56553 1.22049 0.94390 0.88855 1.03467 1.64595 1.13366 1.00626 1.43336 1.23994 0.97755 0.97857 0.92104 1.22850 0.94874 0.92005 0.85442 0.88012 1.86439 1.50354 1.70352 1.30957 1.21454 0.94683 0.84755 0.94927 0.90224 1.45796 1.28569 1.11719 1.48850 1.20748 0.82774 0.85012 0.81115 1.90799 1.27963 1.84015 1.42110 1.24266 1.03848 0.91125 0.99132 0.80790 1.22833 1.03954 0.95940 0.91800 1.24123 1.06668 0.99483 0.88004 1.22661 0.79191 0.85532 0.91730 1.92989 1.87631 1.61129 1.76634 1.93046 1.40089 1.90046 1.93642 1.23352 0.95880 0.89816 1.00638 0.91325 0.77122 0.91835 0.86944 0.88207 0.95163 0.74787 0.74116 0.89548 0.84411 0.83715 0.87689 0.93248 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.58 13.05 21.66 0.28 -49.29 16 2 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 3 Si 0.99 42.25 29.55 68.60 2.03 44.27 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.33 -18.34 9.68 84.04 0.81 -17.52 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.85 16 9 N -0.57 -28.91 5.29 -306.98 -1.62 -30.54 16 10 C 0.44 20.38 7.49 87.66 0.66 21.04 16 11 O -0.61 -31.31 13.09 -3.07 -0.04 -31.36 16 12 C 0.04 1.53 5.52 85.56 0.47 2.00 16 13 N -0.49 -15.40 5.26 -887.58 -4.67 -20.07 16 14 C 0.01 0.36 5.02 86.65 0.44 0.79 16 15 C 0.11 2.50 4.15 31.80 0.13 2.63 16 16 H 0.10 1.84 7.74 -2.38 -0.02 1.82 16 17 O -0.57 -13.00 13.40 -148.98 -2.00 -14.99 16 18 C 0.15 3.57 3.06 45.87 0.14 3.71 16 19 H 0.08 2.38 7.58 -2.38 -0.02 2.36 16 20 N -0.70 -12.20 5.03 -438.36 -2.20 -14.40 16 21 C 0.52 10.86 7.30 87.66 0.64 11.50 16 22 O -0.57 -18.19 14.45 -3.03 -0.04 -18.24 16 23 C -0.16 -1.95 4.04 -11.01 -0.04 -2.00 16 24 H 0.17 0.86 8.14 -2.39 -0.02 0.85 16 25 C -0.11 -0.69 7.61 31.12 0.24 -0.45 16 26 C -0.15 -0.99 7.87 31.12 0.24 -0.75 16 27 C 0.25 4.25 3.02 31.12 0.09 4.34 16 28 F -0.20 -4.12 17.41 44.97 0.78 -3.33 16 29 F -0.19 -4.95 15.20 44.97 0.68 -4.27 16 30 C 0.03 0.84 6.49 86.45 0.56 1.40 16 31 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 32 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 33 H 0.06 2.09 7.81 -2.39 -0.02 2.07 16 34 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 35 H 0.10 3.69 5.97 -2.39 -0.01 3.68 16 36 H 0.03 1.05 8.02 -2.38 -0.02 1.03 16 37 H 0.40 5.95 9.12 -74.06 -0.68 5.28 16 38 H 0.42 4.32 8.35 -92.71 -0.77 3.55 16 39 H 0.09 0.86 8.09 -2.39 -0.02 0.84 16 40 H 0.14 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.14 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.05 1.37 7.57 -2.38 -0.02 1.35 16 44 H 0.10 2.31 7.92 -2.39 -0.02 2.29 16 Total: -1.00 -78.48 372.02 -3.04 -81.52 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -1.09 Total: 34.34 kcal Atomic # 6 Polarization: 21.50 SS G_CDS: 4.85 Total: 26.35 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -8.21 Total: -114.30 kcal Atomic # 8 Polarization: -62.50 SS G_CDS: -2.08 Total: -64.58 kcal Atomic # 9 Polarization: -9.07 SS G_CDS: 1.47 Total: -7.60 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -78.48 -3.04 -81.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194023461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.388 kcal (2) G-P(sol) polarization free energy of solvation -78.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds