Wall clock time and date at job start Wed Apr 1 2020 04:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00251 * 2 1 4 4 C 1.38753 * 120.05684 * 359.95691 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02482 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.46759 * 219.99532 * 9 8 7 11 11 C 1.53004 * 109.46943 * 100.00406 * 9 8 7 12 12 N 1.46506 * 109.46753 * 184.99666 * 11 9 8 13 13 C 1.34782 * 119.99739 * 179.97438 * 12 11 9 14 14 O 1.21694 * 120.00062 * 0.02562 * 13 12 11 15 15 C 1.46656 * 119.99531 * 180.02562 * 13 12 11 16 16 C 1.37932 * 126.20971 * 179.69161 * 15 13 12 17 17 C 1.39924 * 107.10797 * 179.87708 * 16 15 13 18 18 F 1.35100 * 126.08074 * 180.14345 * 17 16 15 19 19 C 1.35570 * 107.84420 * 0.38634 * 17 16 15 20 20 N 1.35747 * 108.83077 * 359.75504 * 19 17 16 21 21 H 0.97001 * 125.68083 * 180.02562 * 20 19 17 22 22 N 1.46492 * 109.47613 * 339.99961 * 9 8 7 23 23 C 1.36937 * 120.00129 * 275.00646 * 22 9 8 24 24 H 1.08006 * 119.99823 * 359.97438 * 23 22 9 25 25 C 1.38814 * 120.00442 * 179.97438 * 23 22 9 26 26 N 1.31624 * 119.99388 * 359.97438 * 25 23 22 27 27 Si 1.86792 * 120.00329 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47322 * 59.99490 * 27 25 23 29 29 H 1.48496 * 109.47239 * 179.97438 * 27 25 23 30 30 H 1.48498 * 109.47349 * 299.99922 * 27 25 23 31 31 H 1.09001 * 109.47048 * 59.99886 * 1 2 3 32 32 H 1.08993 * 109.47446 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47023 * 300.00310 * 1 2 3 34 34 H 1.08002 * 120.02760 * 0.04235 * 4 3 2 35 35 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 36 36 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 37 37 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.47001 * 304.99017 * 11 9 8 39 39 H 1.08995 * 109.47514 * 64.99674 * 11 9 8 40 40 H 0.96997 * 119.99846 * 359.97438 * 12 11 9 41 41 H 1.08000 * 126.44532 * 0.02562 * 16 15 13 42 42 H 1.08002 * 125.58609 * 179.75957 * 19 17 16 43 43 H 0.96999 * 119.99863 * 94.99682 * 22 9 8 44 44 H 0.97002 * 119.99486 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9210 3.6048 -0.0014 6 6 3.3021 3.6757 -0.0005 7 6 4.0561 2.5170 0.0004 8 6 3.4312 1.2847 0.0009 9 6 4.2538 0.0221 0.0025 10 1 3.7929 -0.7126 -0.6578 11 6 4.3212 -0.5409 1.4236 12 7 5.2173 -1.6997 1.4477 13 6 5.4320 -2.3616 2.6020 14 8 4.8813 -1.9969 3.6241 15 6 6.3294 -3.5213 2.6262 16 6 6.6443 -4.2850 3.7308 17 6 7.5267 -5.2832 3.3031 18 9 8.0752 -6.2452 4.0769 19 6 7.7377 -5.1100 1.9752 20 7 7.0148 -4.0416 1.5523 21 1 6.9859 -3.7017 0.6443 22 7 5.6081 0.3209 -0.4692 23 6 5.8773 0.3386 -1.8117 24 1 5.0911 0.1318 -2.5229 25 6 7.1605 0.6223 -2.2588 26 7 8.1184 0.8748 -1.3921 27 14 7.5278 0.6456 -4.0901 28 1 6.6824 1.6719 -4.7515 29 1 8.9605 0.9727 -4.3035 30 1 7.2322 -0.6885 -4.6713 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.2129 2.3204 -0.0009 35 1 1.3342 4.5114 0.0020 36 1 3.7924 4.6380 -0.0014 37 1 5.1345 2.5751 0.0006 38 1 4.6998 0.2252 2.1002 39 1 3.3242 -0.8459 1.7413 40 1 5.6559 -1.9906 0.6329 41 1 6.2767 -4.1413 4.7361 42 1 8.3763 -5.7218 1.3552 43 1 6.3142 0.5064 0.1695 44 1 9.0150 1.0733 -1.7045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198797046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:44 Heat of formation + Delta-G solvation = -48.575636 kcal Electronic energy + Delta-G solvation = -30057.865515 eV Core-core repulsion = 25697.618938 eV Total energy + Delta-G solvation = -4360.246577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.53112 -42.32094 -41.19320 -40.14494 -38.48048 -37.33165 -35.32274 -33.76724 -31.86760 -31.33958 -30.99334 -30.64575 -28.77704 -27.95219 -25.77854 -24.68148 -23.43697 -22.80254 -21.75631 -21.61023 -21.29617 -20.12015 -19.27633 -18.77725 -17.38554 -17.31853 -17.06451 -16.82498 -16.61399 -16.48860 -16.41943 -16.25753 -16.08967 -15.59400 -15.31793 -15.18970 -15.06436 -14.66106 -14.52889 -14.49555 -14.29257 -14.09002 -13.75178 -13.46962 -12.89097 -12.81786 -12.73477 -12.70584 -12.52030 -12.27970 -12.08428 -11.91157 -11.85538 -11.61363 -11.35285 -10.97407 -10.24486 -9.99065 -9.66516 -9.31013 -9.09011 -8.95636 -7.91292 -5.21474 0.26887 0.51731 0.61246 1.39353 1.49407 1.52332 1.56874 1.93521 2.06465 2.22055 2.50020 2.56748 2.93897 3.40355 3.46659 3.75305 3.86067 3.97726 4.04614 4.08938 4.14805 4.25085 4.30469 4.39498 4.40387 4.46474 4.54928 4.58860 4.64422 4.77491 4.79822 4.87075 4.93003 5.04301 5.20280 5.29089 5.41691 5.46039 5.56714 5.64231 5.74423 5.83920 6.02511 6.24474 6.28053 6.47445 6.58682 7.04602 7.36971 8.02430 8.31989 9.29782 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.007991 B = 0.003700 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3503.230938 B = 7565.273503 C =10106.562857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.117 3.883 4 C -0.214 4.214 5 C -0.085 4.085 6 C -0.173 4.173 7 C -0.066 4.066 8 C -0.143 4.143 9 C 0.219 3.781 10 H 0.064 0.936 11 C 0.137 3.863 12 N -0.703 5.703 13 C 0.586 3.414 14 O -0.571 6.571 15 C -0.041 4.041 16 C -0.142 4.142 17 C -0.026 4.026 18 F -0.133 7.133 19 C 0.033 3.967 20 N -0.511 5.511 21 H 0.439 0.561 22 N -0.717 5.717 23 C -0.230 4.230 24 H 0.069 0.931 25 C -0.055 4.055 26 N -0.959 5.959 27 Si 0.959 3.041 28 H -0.289 1.289 29 H -0.300 1.300 30 H -0.277 1.277 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.409 0.591 41 H 0.154 0.846 42 H 0.224 0.776 43 H 0.377 0.623 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.833 -5.642 2.928 12.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.072 3.928 4 C -0.233 4.233 5 C -0.103 4.103 6 C -0.191 4.191 7 C -0.085 4.085 8 C -0.147 4.147 9 C 0.110 3.890 10 H 0.081 0.919 11 C 0.013 3.987 12 N -0.353 5.353 13 C 0.374 3.626 14 O -0.451 6.451 15 C -0.156 4.156 16 C -0.170 4.170 17 C -0.051 4.051 18 F -0.112 7.112 19 C -0.105 4.105 20 N -0.108 5.108 21 H 0.281 0.719 22 N -0.357 5.357 23 C -0.361 4.361 24 H 0.087 0.913 25 C -0.248 4.248 26 N -0.609 5.609 27 Si 0.789 3.211 28 H -0.215 1.215 29 H -0.227 1.227 30 H -0.203 1.203 31 H 0.082 0.918 32 H 0.132 0.868 33 H 0.084 0.916 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.148 0.852 37 H 0.128 0.872 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.245 0.755 41 H 0.172 0.828 42 H 0.240 0.760 43 H 0.209 0.791 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.186 -5.518 3.297 12.902 hybrid contribution 0.936 0.421 -1.308 1.663 sum -10.250 -5.098 1.989 11.619 Atomic orbital electron populations 1.23304 0.76820 1.05242 1.02142 1.86053 1.23133 1.26717 1.88713 1.18995 0.91436 0.85160 0.97233 1.21449 1.00885 0.91793 1.09156 1.21210 0.94070 0.97976 0.97069 1.21286 0.94808 0.98234 1.04800 1.20924 1.00053 0.91777 0.95716 1.20218 0.91159 0.97400 1.05968 1.19180 0.85452 0.92024 0.92390 0.91865 1.21403 0.93605 0.86762 0.96942 1.45742 1.47830 1.30871 1.10896 1.17171 0.80407 0.81600 0.83409 1.90798 1.51846 1.68500 1.34000 1.19997 1.05618 1.01080 0.88863 1.21380 1.00754 0.95730 0.99130 1.16567 1.04789 0.93655 0.90069 1.91421 1.84562 1.60956 1.74302 1.22384 1.00491 0.92982 0.94659 1.41865 1.34342 1.23676 1.10956 0.71900 1.42465 1.05301 1.83828 1.04136 1.19328 0.93726 1.38819 0.84261 0.91312 1.25265 0.96125 1.03095 1.00353 1.69784 1.01582 1.55810 1.33738 0.85446 0.75972 0.77936 0.81714 1.21540 1.22692 1.20258 0.91846 0.86754 0.91635 0.83003 0.83104 0.85177 0.87233 0.93040 0.90543 0.75485 0.82808 0.75998 0.79053 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.33 -9.34 9.68 -92.39 -0.89 -10.23 16 3 C 0.12 3.65 6.66 22.51 0.15 3.80 16 4 C -0.21 -5.49 9.04 22.37 0.20 -5.29 16 5 C -0.09 -2.17 10.04 22.26 0.22 -1.95 16 6 C -0.17 -5.32 10.04 22.28 0.22 -5.10 16 7 C -0.07 -2.48 9.33 22.25 0.21 -2.27 16 8 C -0.14 -5.21 5.07 -19.77 -0.10 -5.31 16 9 C 0.22 8.18 2.32 44.25 0.10 8.29 16 10 H 0.06 2.43 7.79 -2.39 -0.02 2.42 16 11 C 0.14 4.80 5.21 86.38 0.45 5.25 16 12 N -0.70 -22.85 5.38 -467.08 -2.51 -25.37 16 13 C 0.59 19.94 7.79 86.44 0.67 20.62 16 14 O -0.57 -23.05 16.88 -4.33 -0.07 -23.13 16 15 C -0.04 -1.18 7.05 40.36 0.28 -0.90 16 16 C -0.14 -4.04 10.66 22.61 0.24 -3.80 16 17 C -0.03 -0.64 7.98 22.06 0.18 -0.47 16 18 F -0.13 -3.43 17.32 44.97 0.78 -2.65 16 19 C 0.03 0.65 11.90 83.47 0.99 1.64 16 20 N -0.51 -11.17 6.00 -183.38 -1.10 -12.27 16 21 H 0.44 8.11 8.19 -92.71 -0.76 7.35 16 22 N -0.72 -31.52 3.17 -326.50 -1.03 -32.55 16 23 C -0.23 -11.29 9.92 84.03 0.83 -10.46 16 24 H 0.07 3.37 7.83 -2.91 -0.02 3.35 16 25 C -0.06 -2.84 5.50 84.86 0.47 -2.37 16 26 N -0.96 -53.07 13.06 21.65 0.28 -52.78 16 27 Si 0.96 42.74 29.55 68.60 2.03 44.77 16 28 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 29 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 30 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 31 H 0.06 0.96 7.66 -2.39 -0.02 0.95 16 32 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 0.98 7.66 -2.38 -0.02 0.96 16 34 H 0.15 2.83 6.30 -2.91 -0.02 2.81 16 35 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.11 4.74 7.14 -2.91 -0.02 4.72 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 40 H 0.41 12.58 7.26 -92.71 -0.67 11.91 16 41 H 0.15 4.33 8.06 -2.91 -0.02 4.30 16 42 H 0.22 2.35 8.06 -2.91 -0.02 2.33 16 43 H 0.38 18.16 7.80 -92.71 -0.72 17.44 16 44 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -66.24 383.24 2.64 -63.60 By element: Atomic # 1 Polarization: 48.56 SS G_CDS: -1.07 Total: 47.48 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 6.24 Total: 3.13 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -4.37 Total: -122.98 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.97 Total: -33.36 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.78 Total: -2.65 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -66.24 2.64 -63.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198797046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.026 kcal (2) G-P(sol) polarization free energy of solvation -66.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds