Wall clock time and date at job start Wed Apr 1 2020 04:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35901 * 116.99816 * 2 1 4 4 C 1.38751 * 120.05979 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94627 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05452 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.11369 * 0.02562 * 6 5 4 8 8 C 1.38175 * 120.05575 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02845 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47260 * 224.24410 * 9 8 7 11 11 C 1.53003 * 109.47276 * 344.24878 * 9 8 7 12 12 N 1.46499 * 109.47194 * 174.99917 * 11 9 8 13 13 C 1.34770 * 119.99621 * 179.97438 * 12 11 9 14 14 O 1.21695 * 120.00428 * 0.02562 * 13 12 11 15 15 C 1.46664 * 119.99845 * 179.97438 * 13 12 11 16 16 C 1.37926 * 126.21554 * 179.68617 * 15 13 12 17 17 C 1.39932 * 107.10613 * 179.88383 * 16 15 13 18 18 F 1.35101 * 126.07552 * 180.14483 * 17 16 15 19 19 C 1.35563 * 107.84469 * 0.39023 * 17 16 15 20 20 N 1.35752 * 108.83290 * 359.75657 * 19 17 16 21 21 H 0.97002 * 125.67872 * 180.02562 * 20 19 17 22 22 N 1.46504 * 109.46946 * 104.24435 * 9 8 7 23 23 C 1.36935 * 120.00234 * 300.01038 * 22 9 8 24 24 H 1.07997 * 120.00008 * 4.93563 * 23 22 9 25 25 C 1.38805 * 119.99820 * 184.93820 * 23 22 9 26 26 N 1.31618 * 120.00240 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99917 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47306 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47561 * 119.99837 * 27 25 23 30 30 H 1.48506 * 109.47371 * 239.99789 * 27 25 23 31 31 H 1.08998 * 109.46884 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46871 * 300.00247 * 1 2 3 33 33 H 1.09000 * 109.46885 * 60.00213 * 1 2 3 34 34 H 1.08005 * 120.02249 * 359.97438 * 4 3 2 35 35 H 1.07995 * 119.97214 * 180.24939 * 5 4 3 36 36 H 1.08003 * 119.94165 * 179.97438 * 6 5 4 37 37 H 1.08002 * 119.97664 * 179.97438 * 7 6 5 38 38 H 1.09007 * 109.46837 * 294.99936 * 11 9 8 39 39 H 1.09000 * 109.47202 * 54.99738 * 11 9 8 40 40 H 0.96999 * 119.99669 * 359.97438 * 12 11 9 41 41 H 1.07993 * 126.44647 * 0.02669 * 16 15 13 42 42 H 1.07999 * 125.58476 * 179.75599 * 19 17 16 43 43 H 0.96997 * 119.99286 * 120.00718 * 22 9 8 44 44 H 0.97006 * 120.00022 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3020 3.6758 0.0016 7 6 4.0560 2.5171 0.0011 8 6 3.4312 1.2847 0.0005 9 6 4.2538 0.0221 -0.0006 10 1 3.8350 -0.6837 -0.7179 11 6 5.6953 0.3528 -0.3926 12 7 6.5211 -0.8518 -0.2783 13 6 7.8345 -0.7990 -0.5756 14 8 8.3347 0.2494 -0.9385 15 6 8.6614 -2.0049 -0.4607 16 6 10.0097 -2.0977 -0.7364 17 6 10.3898 -3.4218 -0.4904 18 9 11.6320 -3.9328 -0.6354 19 6 9.2890 -4.1018 -0.0860 20 7 8.2317 -3.2506 -0.0640 21 1 7.3244 -3.4819 0.1895 22 7 4.2361 -0.5734 1.3378 23 6 4.7160 0.1332 2.4081 24 1 5.0334 1.1576 2.2803 25 6 4.7945 -0.4670 3.6571 26 7 4.4072 -1.7153 3.8130 27 14 5.4484 0.4972 5.1173 28 1 5.8139 1.8689 4.6812 29 1 4.4024 0.5737 6.1686 30 1 6.6495 -0.1847 5.6630 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.2128 2.3203 0.0005 35 1 1.3341 4.5113 0.0056 36 1 3.7923 4.6381 0.0016 37 1 5.1345 2.5751 0.0011 38 1 5.7185 0.7131 -1.4212 39 1 6.0845 1.1245 0.2716 40 1 6.1225 -1.6873 0.0113 41 1 10.6516 -1.2984 -1.0758 42 1 9.2582 -5.1491 0.1757 43 1 3.8844 -1.4683 1.4657 44 1 4.4617 -2.1346 4.6860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198797056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:48 Heat of formation + Delta-G solvation = -46.844988 kcal Electronic energy + Delta-G solvation = -30306.951892 eV Core-core repulsion = 25946.780361 eV Total energy + Delta-G solvation = -4360.171531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.52842 -42.29385 -41.17164 -40.09066 -38.49057 -37.30344 -35.16723 -33.73946 -31.85267 -31.44810 -30.86589 -30.58548 -28.69291 -27.79941 -26.25671 -24.48469 -23.63568 -22.69106 -21.75844 -21.41969 -21.25400 -19.98509 -19.39040 -18.69947 -17.30881 -17.19953 -17.08702 -16.77264 -16.54238 -16.48775 -16.41250 -16.23154 -16.08264 -15.62167 -15.52578 -15.36998 -14.91978 -14.67630 -14.50733 -14.39913 -14.25158 -13.99172 -13.55660 -13.40460 -13.08460 -12.91589 -12.75245 -12.70726 -12.65979 -12.22056 -11.87716 -11.84112 -11.74740 -11.59398 -11.30925 -10.94571 -10.13124 -9.95676 -9.70592 -9.28437 -9.09020 -8.83969 -7.90780 -5.16077 0.30384 0.51602 0.65705 1.40460 1.40840 1.45904 1.50869 1.95912 2.12413 2.29850 2.54999 2.57043 2.95700 3.41589 3.49050 3.83947 3.89552 4.01766 4.04262 4.06448 4.25057 4.25515 4.32541 4.37489 4.43615 4.45402 4.55018 4.60913 4.66760 4.76816 4.81866 4.84800 4.88077 5.12164 5.19541 5.34649 5.44031 5.56211 5.61139 5.62674 5.74519 5.75534 6.01574 6.27766 6.30264 6.55791 6.64812 7.13243 7.41128 8.07059 8.36180 9.31102 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010159 B = 0.003386 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.382867 B = 8266.836710 C = 9308.201041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.327 6.327 3 C 0.127 3.873 4 C -0.218 4.218 5 C -0.090 4.090 6 C -0.166 4.166 7 C -0.094 4.094 8 C -0.125 4.125 9 C 0.215 3.785 10 H 0.084 0.916 11 C 0.119 3.881 12 N -0.692 5.692 13 C 0.583 3.417 14 O -0.575 6.575 15 C -0.039 4.039 16 C -0.147 4.147 17 C -0.027 4.027 18 F -0.134 7.134 19 C 0.033 3.967 20 N -0.510 5.510 21 H 0.440 0.560 22 N -0.706 5.706 23 C -0.203 4.203 24 H 0.063 0.937 25 C -0.059 4.059 26 N -0.955 5.955 27 Si 0.939 3.061 28 H -0.278 1.278 29 H -0.298 1.298 30 H -0.299 1.299 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.124 0.876 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.405 0.595 41 H 0.152 0.848 42 H 0.224 0.776 43 H 0.379 0.621 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.676 -0.990 -11.291 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.241 6.241 3 C 0.081 3.919 4 C -0.236 4.236 5 C -0.108 4.108 6 C -0.184 4.184 7 C -0.113 4.113 8 C -0.128 4.128 9 C 0.105 3.895 10 H 0.102 0.898 11 C -0.007 4.007 12 N -0.341 5.341 13 C 0.371 3.629 14 O -0.456 6.456 15 C -0.154 4.154 16 C -0.174 4.174 17 C -0.052 4.052 18 F -0.113 7.113 19 C -0.106 4.106 20 N -0.107 5.107 21 H 0.281 0.719 22 N -0.344 5.344 23 C -0.335 4.335 24 H 0.081 0.919 25 C -0.252 4.252 26 N -0.607 5.607 27 Si 0.772 3.228 28 H -0.203 1.203 29 H -0.226 1.226 30 H -0.227 1.227 31 H 0.129 0.871 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.157 0.843 37 H 0.142 0.858 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.241 0.759 41 H 0.170 0.830 42 H 0.241 0.759 43 H 0.212 0.788 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.361 -0.335 -11.397 11.887 hybrid contribution -0.184 -0.118 1.614 1.628 sum -3.545 -0.454 -9.784 10.416 Atomic orbital electron populations 1.23225 0.77356 1.04932 1.01670 1.86093 1.22615 1.26926 1.88441 1.18970 0.91779 0.84917 0.96232 1.21446 1.00729 0.92175 1.09294 1.21191 0.94576 0.97590 0.97426 1.21280 0.94511 0.98495 1.04154 1.21151 1.00226 0.91825 0.98116 1.19852 0.91556 0.96552 1.04858 1.19216 0.90606 0.91912 0.87751 0.89763 1.21845 0.92034 0.86739 1.00076 1.45526 1.07874 1.14154 1.66539 1.17165 0.81731 0.86699 0.77348 1.90783 1.73366 1.31246 1.50201 1.20054 0.94566 0.86394 1.14345 1.21371 0.93612 0.96995 1.05431 1.16582 0.81366 0.92828 1.14434 1.91417 1.38125 1.86846 1.94905 1.22372 0.84873 0.98384 1.04961 1.41835 1.11972 1.06941 1.49977 0.71855 1.42335 1.73186 1.17168 1.01708 1.19202 1.31270 0.95002 0.88056 0.91940 1.25089 1.03837 0.96956 0.99282 1.69732 1.55756 1.12483 1.22704 0.85572 0.77222 0.78514 0.81519 1.20288 1.22604 1.22666 0.87111 0.92995 0.91177 0.83731 0.83328 0.84349 0.85841 0.91041 0.93106 0.75928 0.83018 0.75905 0.78774 0.94426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.81 113.37 1.11 1.61 16 2 O -0.33 -10.45 9.81 -92.43 -0.91 -11.36 16 3 C 0.13 4.19 6.66 22.51 0.15 4.34 16 4 C -0.22 -5.97 9.04 22.36 0.20 -5.77 16 5 C -0.09 -2.27 10.04 22.25 0.22 -2.05 16 6 C -0.17 -4.64 10.04 22.28 0.22 -4.42 16 7 C -0.09 -3.11 8.80 22.26 0.20 -2.91 16 8 C -0.12 -4.38 4.74 -19.77 -0.09 -4.48 16 9 C 0.21 7.62 2.69 44.24 0.12 7.74 16 10 H 0.08 2.76 7.98 -2.39 -0.02 2.74 16 11 C 0.12 4.13 3.97 86.38 0.34 4.48 16 12 N -0.69 -22.85 5.38 -467.09 -2.51 -25.37 16 13 C 0.58 20.59 7.79 86.44 0.67 21.26 16 14 O -0.58 -24.04 16.88 -4.33 -0.07 -24.12 16 15 C -0.04 -1.17 7.05 40.36 0.28 -0.88 16 16 C -0.15 -4.36 10.66 22.61 0.24 -4.11 16 17 C -0.03 -0.70 7.98 22.06 0.18 -0.53 16 18 F -0.13 -3.57 17.32 44.97 0.78 -2.79 16 19 C 0.03 0.65 11.90 83.47 0.99 1.64 16 20 N -0.51 -11.41 6.00 -183.38 -1.10 -12.51 16 21 H 0.44 8.01 8.19 -92.71 -0.76 7.25 16 22 N -0.71 -30.43 4.72 -326.50 -1.54 -31.97 16 23 C -0.20 -10.18 8.78 84.03 0.74 -9.44 16 24 H 0.06 3.23 7.06 -2.91 -0.02 3.21 16 25 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 26 N -0.96 -53.22 13.06 21.65 0.28 -52.94 16 27 Si 0.94 45.48 29.55 68.60 2.03 47.50 16 28 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 29 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 30 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 31 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.11 7.66 -2.39 -0.02 1.10 16 33 H 0.07 1.19 7.66 -2.39 -0.02 1.17 16 34 H 0.15 3.12 6.30 -2.91 -0.02 3.10 16 35 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 37 H 0.12 4.08 5.83 -2.91 -0.02 4.07 16 38 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 39 H 0.05 2.03 5.89 -2.39 -0.01 2.01 16 40 H 0.40 12.21 7.26 -92.71 -0.67 11.54 16 41 H 0.15 4.51 8.06 -2.91 -0.02 4.48 16 42 H 0.22 2.43 8.06 -2.91 -0.02 2.40 16 43 H 0.38 17.52 8.04 -92.71 -0.75 16.78 16 44 H 0.25 13.66 8.31 -92.70 -0.77 12.89 16 Total: -1.00 -69.15 378.24 1.92 -67.23 By element: Atomic # 1 Polarization: 43.60 SS G_CDS: -1.09 Total: 42.51 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 6.05 Total: 3.79 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -4.87 Total: -122.78 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.98 Total: -35.48 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -69.15 1.92 -67.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198797056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.389 kcal (2) G-P(sol) polarization free energy of solvation -69.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds