Wall clock time and date at job start Wed Apr 1 2020 04:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 120.00528 * 2 1 4 4 H 1.48496 * 109.47271 * 270.00537 * 3 2 1 5 5 H 1.48507 * 109.46738 * 30.00323 * 3 2 1 6 6 H 1.48496 * 109.47204 * 150.00002 * 3 2 1 7 7 C 1.38956 * 119.99391 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00296 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99778 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00325 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99628 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00269 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46886 * 179.97438 * 12 10 9 14 14 C 1.48723 * 111.00895 * 174.62021 * 13 12 10 15 15 C 1.54383 * 104.51251 * 158.96609 * 14 13 12 16 16 H 1.09005 * 110.32435 * 95.21777 * 15 14 13 17 17 N 1.46503 * 110.32420 * 217.31903 * 15 14 13 18 18 C 1.34775 * 119.99563 * 272.17536 * 17 15 14 19 19 O 1.21281 * 120.00582 * 355.26661 * 18 17 15 20 20 C 1.50708 * 119.99773 * 175.26958 * 18 17 15 21 21 C 1.52995 * 115.55000 * 303.72424 * 20 18 17 22 22 F 1.39898 * 109.47064 * 305.20112 * 21 20 18 23 23 F 1.39897 * 109.46993 * 65.20408 * 21 20 18 24 24 C 1.53003 * 117.49630 * 158.04953 * 20 18 17 25 25 C 1.53001 * 117.49429 * 89.39480 * 20 18 17 26 26 C 1.54255 * 105.15269 * 336.26555 * 15 14 13 27 27 H 1.09000 * 110.32523 * 118.84166 * 26 15 14 28 28 O 1.42902 * 110.32583 * 241.05390 * 26 15 14 29 29 C 1.48560 * 110.99778 * 290.12562 * 13 12 10 30 30 H 0.97003 * 119.99426 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99840 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46717 * 60.00219 * 12 10 9 33 33 H 1.09000 * 109.47108 * 299.99917 * 12 10 9 34 34 H 1.08995 * 110.39192 * 40.24718 * 14 13 12 35 35 H 1.09000 * 110.50639 * 277.74808 * 14 13 12 36 36 H 0.96993 * 120.00391 * 92.17333 * 17 15 14 37 37 H 1.09004 * 109.46889 * 185.20197 * 21 20 18 38 38 H 1.08993 * 117.50199 * 0.02562 * 24 20 18 39 39 H 1.08996 * 117.49539 * 145.02392 * 24 20 18 40 40 H 1.09003 * 117.49393 * 214.97896 * 25 20 18 41 41 H 1.08996 * 117.50378 * 359.97036 * 25 20 18 42 42 H 0.96699 * 113.99689 * 180.02562 * 28 26 15 43 43 H 1.08991 * 110.41353 * 82.18753 * 29 13 12 44 44 H 1.09000 * 110.41415 * 319.73767 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4458 2.6526 0.7002 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 1.4688 -2.1388 -0.0005 9 7 3.3798 -1.2036 -0.0011 10 6 4.0537 -2.3708 -0.0011 11 8 3.4471 -3.4211 -0.0001 12 6 5.5607 -2.3708 -0.0022 13 7 6.0502 -3.7559 -0.0014 14 6 7.5310 -3.7981 -0.1327 15 6 7.9286 -5.1855 0.4154 16 1 8.0215 -5.9025 -0.4005 17 7 9.1874 -5.0971 1.1596 18 6 10.3628 -5.2296 0.5135 19 8 10.3781 -5.5072 -0.6670 20 6 11.6582 -5.0329 1.2581 21 6 11.8155 -3.6847 1.9640 22 9 11.6246 -2.6504 1.0416 23 9 10.8657 -3.5796 2.9857 24 6 12.9166 -5.6723 0.6676 25 6 12.2800 -6.2589 1.9300 26 6 6.7768 -5.5922 1.3574 27 1 6.3030 -6.5076 1.0030 28 8 7.2634 -5.7675 2.6896 29 6 5.7787 -4.4157 1.3017 30 1 -0.4849 0.8401 0.0004 31 1 3.8649 -0.3635 -0.0014 32 1 5.9246 -1.8567 0.8873 33 1 5.9233 -1.8574 -0.8927 34 1 7.9878 -3.0086 0.4640 35 1 7.8245 -3.7039 -1.1782 36 1 9.1750 -4.9431 2.1171 37 1 12.8164 -3.6119 2.3895 38 1 12.8076 -6.2348 -0.2596 39 1 13.8565 -5.1325 0.7823 40 1 12.8014 -6.1048 2.8747 41 1 11.7519 -7.2076 1.8339 42 1 6.5826 -6.0243 3.3264 43 1 4.7537 -4.7849 1.3346 44 1 5.9609 -3.7234 2.1236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219627455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:23 Heat of formation + Delta-G solvation = -170.407116 kcal Electronic energy + Delta-G solvation = -31408.718274 eV Core-core repulsion = 26612.419462 eV Total energy + Delta-G solvation = -4796.298811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.38160 -47.38722 -40.60029 -39.39242 -38.12148 -36.99251 -35.87268 -34.44128 -33.86150 -31.69713 -30.49643 -28.30024 -27.68333 -26.67137 -24.39817 -23.62852 -23.11089 -21.52208 -20.68645 -20.36863 -19.36316 -18.47836 -18.30504 -17.78745 -17.52150 -17.39650 -16.48347 -16.11534 -15.98681 -15.47458 -15.07662 -14.97956 -14.93514 -14.74092 -14.28863 -14.25191 -13.76644 -13.73911 -13.71415 -13.20047 -13.11271 -13.03817 -12.95301 -12.44263 -12.23414 -12.19562 -12.03326 -11.95721 -11.55509 -11.46111 -11.27827 -11.16608 -11.13188 -10.91821 -10.59849 -10.17232 -10.13299 -9.98260 -9.56266 -9.26296 -8.68524 -8.21031 -8.15137 -6.31704 -3.83054 2.11073 2.64271 2.92038 3.02665 3.07341 3.15161 3.16888 3.61801 3.71775 3.75140 3.93583 4.03727 4.09321 4.12908 4.30702 4.47068 4.50597 4.52787 4.66896 4.90023 4.97071 5.00331 5.03050 5.19911 5.22247 5.25516 5.37015 5.48808 5.54431 5.61895 5.72719 5.84203 5.88039 5.93714 6.14891 6.22507 6.87350 6.96962 7.31175 7.39373 7.57380 7.96655 8.13263 8.59372 8.94350 9.41740 9.82179 10.81353 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.002460 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.975034 B =11381.543949 C =12081.862840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.455 3.545 11 O -0.560 6.560 12 C 0.032 3.968 13 N -0.477 5.477 14 C 0.019 3.981 15 C 0.150 3.850 16 H 0.108 0.892 17 N -0.699 5.699 18 C 0.553 3.447 19 O -0.530 6.530 20 C -0.236 4.236 21 C 0.307 3.693 22 F -0.195 7.195 23 F -0.196 7.196 24 C -0.123 4.123 25 C -0.134 4.134 26 C 0.095 3.905 27 H 0.081 0.919 28 O -0.567 6.567 29 C 0.005 3.995 30 H 0.273 0.727 31 H 0.370 0.630 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.414 0.586 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.387 0.613 43 H 0.107 0.893 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.356 -9.602 7.712 30.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.240 3.760 11 O -0.442 6.442 12 C -0.100 4.100 13 N -0.202 5.202 14 C -0.110 4.110 15 C 0.044 3.956 16 H 0.126 0.874 17 N -0.353 5.353 18 C 0.337 3.663 19 O -0.406 6.406 20 C -0.240 4.240 21 C 0.253 3.747 22 F -0.176 7.176 23 F -0.177 7.177 24 C -0.160 4.160 25 C -0.171 4.171 26 C 0.035 3.965 27 H 0.099 0.901 28 O -0.373 6.373 29 C -0.124 4.124 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.253 0.747 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.236 0.764 43 H 0.126 0.874 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 27.964 -10.452 6.149 30.480 hybrid contribution 0.169 2.167 1.369 2.569 sum 28.133 -8.285 7.518 30.276 Atomic orbital electron populations 1.69625 1.05625 1.27492 1.49381 1.25038 0.95498 0.97977 0.97651 0.86675 0.79740 0.84045 0.78955 1.19559 1.20180 1.19553 1.19419 0.79158 0.96617 1.48077 0.86259 1.42204 1.07555 1.06119 1.67173 1.19543 0.87840 0.84595 0.84021 1.90535 1.69328 1.30820 1.53522 1.22114 0.95932 0.89884 1.02038 1.65135 1.08887 1.15314 1.30849 1.23649 0.89149 0.95959 1.02261 1.21797 0.81779 0.97831 0.94145 0.87435 1.45753 1.04287 1.72218 1.13012 1.19039 0.83659 0.76871 0.86723 1.90721 1.87079 1.47515 1.15271 1.22584 0.97037 0.96107 1.08281 1.21132 0.92142 0.83048 0.78343 1.93043 1.96420 1.60620 1.67488 1.93009 1.68209 1.96408 1.60103 1.23097 0.93044 1.00986 0.98894 1.23125 1.01305 0.94833 0.97883 1.22844 0.92976 0.98201 0.82522 0.90109 1.86251 1.40018 1.92279 1.18758 1.23949 1.01619 0.95803 0.91002 0.91614 0.79709 0.92965 0.88849 0.93165 0.89030 0.74739 0.86199 0.86349 0.87023 0.86886 0.87017 0.76389 0.87435 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 2 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 3 Si 0.88 19.52 27.74 -169.99 -4.71 14.81 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.48 6.52 56.52 0.37 -5.12 16 7 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 9 N -0.59 -14.17 5.09 -10.96 -0.06 -14.23 16 10 C 0.45 10.36 7.58 -10.99 -0.08 10.28 16 11 O -0.56 -14.80 14.42 5.55 0.08 -14.72 16 12 C 0.03 0.56 5.30 -4.98 -0.03 0.53 16 13 N -0.48 -7.80 5.06 -231.27 -1.17 -8.97 16 14 C 0.02 0.27 6.22 -2.09 -0.01 0.25 16 15 C 0.15 1.90 3.42 -66.55 -0.23 1.68 16 16 H 0.11 1.45 7.54 -51.93 -0.39 1.05 16 17 N -0.70 -8.06 4.77 -52.46 -0.25 -8.31 16 18 C 0.55 6.58 6.96 -10.98 -0.08 6.51 16 19 O -0.53 -8.02 16.14 5.56 0.09 -7.93 16 20 C -0.24 -1.89 2.07 -155.66 -0.32 -2.21 16 21 C 0.31 2.29 5.09 37.16 0.19 2.48 16 22 F -0.19 -2.07 17.14 2.25 0.04 -2.03 16 23 F -0.20 -1.77 15.95 2.25 0.04 -1.74 16 24 C -0.12 -0.70 9.73 -26.69 -0.26 -0.96 16 25 C -0.13 -0.66 9.96 -26.69 -0.27 -0.92 16 26 C 0.09 1.11 4.42 -25.35 -0.11 1.00 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 O -0.57 -5.49 11.51 -35.23 -0.41 -5.89 16 29 C 0.00 0.07 5.54 -2.18 -0.01 0.06 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 32 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 33 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 34 H 0.05 0.70 7.91 -51.93 -0.41 0.28 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.41 4.53 5.93 -40.82 -0.24 4.29 16 37 H 0.12 0.40 8.09 -51.93 -0.42 -0.02 16 38 H 0.12 0.83 7.84 -51.93 -0.41 0.42 16 39 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.39 2.37 9.12 45.56 0.42 2.78 16 43 H 0.11 1.85 6.91 -51.93 -0.36 1.49 16 44 H 0.05 0.74 7.76 -51.93 -0.40 0.34 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -35.90 373.74 -6.36 -42.26 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -4.95 Total: 15.16 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -1.46 Total: 10.98 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.70 Total: -56.52 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.24 Total: -28.55 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.07 Total: -3.76 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.71 Total: 14.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.90 -6.36 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219627455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.151 kcal (2) G-P(sol) polarization free energy of solvation -35.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds