Wall clock time and date at job start Wed Apr 1 2020 04:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 120.00528 * 2 1 4 4 H 1.48496 * 109.47271 * 270.00537 * 3 2 1 5 5 H 1.48507 * 109.46738 * 30.00323 * 3 2 1 6 6 H 1.48496 * 109.47204 * 150.00002 * 3 2 1 7 7 C 1.38956 * 119.99391 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00296 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99778 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00325 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99628 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00269 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46886 * 179.97438 * 12 10 9 14 14 C 1.48723 * 111.00895 * 174.62021 * 13 12 10 15 15 C 1.54383 * 104.51251 * 158.96609 * 14 13 12 16 16 H 1.09005 * 110.32435 * 95.21777 * 15 14 13 17 17 N 1.46503 * 110.32420 * 217.31903 * 15 14 13 18 18 C 1.34775 * 119.99563 * 272.17536 * 17 15 14 19 19 O 1.21281 * 120.00582 * 355.26661 * 18 17 15 20 20 C 1.50708 * 119.99773 * 175.26958 * 18 17 15 21 21 C 1.52995 * 115.55000 * 303.72424 * 20 18 17 22 22 F 1.39898 * 109.47064 * 305.20112 * 21 20 18 23 23 F 1.39897 * 109.46993 * 65.20408 * 21 20 18 24 24 C 1.53003 * 117.49630 * 158.04953 * 20 18 17 25 25 C 1.53001 * 117.49429 * 89.39480 * 20 18 17 26 26 C 1.54255 * 105.15269 * 336.26555 * 15 14 13 27 27 H 1.09000 * 110.32523 * 118.84166 * 26 15 14 28 28 O 1.42902 * 110.32583 * 241.05390 * 26 15 14 29 29 C 1.48560 * 110.99778 * 290.12562 * 13 12 10 30 30 H 0.97003 * 119.99426 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99840 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46717 * 60.00219 * 12 10 9 33 33 H 1.09000 * 109.47108 * 299.99917 * 12 10 9 34 34 H 1.08995 * 110.39192 * 40.24718 * 14 13 12 35 35 H 1.09000 * 110.50639 * 277.74808 * 14 13 12 36 36 H 0.96993 * 120.00391 * 92.17333 * 17 15 14 37 37 H 1.09004 * 109.46889 * 185.20197 * 21 20 18 38 38 H 1.08993 * 117.50199 * 0.02562 * 24 20 18 39 39 H 1.08996 * 117.49539 * 145.02392 * 24 20 18 40 40 H 1.09003 * 117.49393 * 214.97896 * 25 20 18 41 41 H 1.08996 * 117.50378 * 359.97036 * 25 20 18 42 42 H 0.96699 * 113.99689 * 180.02562 * 28 26 15 43 43 H 1.08991 * 110.41353 * 82.18753 * 29 13 12 44 44 H 1.09000 * 110.41415 * 319.73767 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4458 2.6526 0.7002 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 1.4688 -2.1388 -0.0005 9 7 3.3798 -1.2036 -0.0011 10 6 4.0537 -2.3708 -0.0011 11 8 3.4471 -3.4211 -0.0001 12 6 5.5607 -2.3708 -0.0022 13 7 6.0502 -3.7559 -0.0014 14 6 7.5310 -3.7981 -0.1327 15 6 7.9286 -5.1855 0.4154 16 1 8.0215 -5.9025 -0.4005 17 7 9.1874 -5.0971 1.1596 18 6 10.3628 -5.2296 0.5135 19 8 10.3781 -5.5072 -0.6670 20 6 11.6582 -5.0329 1.2581 21 6 11.8155 -3.6847 1.9640 22 9 11.6246 -2.6504 1.0416 23 9 10.8657 -3.5796 2.9857 24 6 12.9166 -5.6723 0.6676 25 6 12.2800 -6.2589 1.9300 26 6 6.7768 -5.5922 1.3574 27 1 6.3030 -6.5076 1.0030 28 8 7.2634 -5.7675 2.6896 29 6 5.7787 -4.4157 1.3017 30 1 -0.4849 0.8401 0.0004 31 1 3.8649 -0.3635 -0.0014 32 1 5.9246 -1.8567 0.8873 33 1 5.9233 -1.8574 -0.8927 34 1 7.9878 -3.0086 0.4640 35 1 7.8245 -3.7039 -1.1782 36 1 9.1750 -4.9431 2.1171 37 1 12.8164 -3.6119 2.3895 38 1 12.8076 -6.2348 -0.2596 39 1 13.8565 -5.1325 0.7823 40 1 12.8014 -6.1048 2.8747 41 1 11.7519 -7.2076 1.8339 42 1 6.5826 -6.0243 3.3264 43 1 4.7537 -4.7849 1.3346 44 1 5.9609 -3.7234 2.1236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219627455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:22 Heat of formation + Delta-G solvation = -202.080749 kcal Electronic energy + Delta-G solvation = -31410.091746 eV Core-core repulsion = 26612.419462 eV Total energy + Delta-G solvation = -4797.672283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.97753 -48.00646 -41.55372 -40.62586 -39.63819 -37.65398 -36.95034 -35.98681 -35.34579 -33.77828 -31.70932 -29.33835 -28.52044 -27.95365 -26.00475 -24.58596 -23.47706 -22.77426 -21.70093 -21.28027 -21.16729 -20.23260 -19.14989 -18.58202 -18.12231 -18.10123 -17.81683 -17.32313 -16.91206 -16.79457 -16.45925 -16.38072 -15.84352 -15.76681 -15.46271 -15.13003 -14.94568 -14.90656 -14.62221 -14.44344 -14.37488 -14.28441 -14.09258 -13.70789 -13.64325 -13.32737 -13.05250 -12.69641 -12.65389 -12.61360 -12.50898 -12.42923 -12.12113 -11.99683 -11.68366 -11.59432 -11.51692 -11.11140 -11.02182 -10.49088 -10.26574 -10.22731 -9.55376 -8.42966 -6.03600 1.28549 1.30476 1.33748 1.42251 1.81595 1.91336 2.20981 2.42082 2.56757 2.65919 2.98159 3.11599 3.19270 3.24385 3.35918 3.43903 3.59862 3.63568 3.66053 3.97817 4.07814 4.08825 4.12901 4.15321 4.24669 4.34322 4.38695 4.54745 4.58520 4.67584 4.76227 4.81906 4.90763 4.93077 5.12053 5.24518 5.48941 5.68574 5.73143 5.94209 6.42713 6.57018 6.70140 6.85730 7.09721 7.36730 7.92649 8.74462 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.002460 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.975034 B =11381.543949 C =12081.862840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.963 3.037 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.234 1.234 7 C -0.326 4.326 8 H 0.058 0.942 9 N -0.591 5.591 10 C 0.455 3.545 11 O -0.603 6.603 12 C 0.043 3.957 13 N -0.500 5.500 14 C 0.028 3.972 15 C 0.150 3.850 16 H 0.096 0.904 17 N -0.693 5.693 18 C 0.545 3.455 19 O -0.572 6.572 20 C -0.259 4.259 21 C 0.302 3.698 22 F -0.217 7.217 23 F -0.207 7.207 24 C -0.118 4.118 25 C -0.112 4.112 26 C 0.112 3.888 27 H 0.086 0.914 28 O -0.563 6.563 29 C 0.008 3.992 30 H 0.279 0.721 31 H 0.389 0.611 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.419 0.581 37 H 0.172 0.828 38 H 0.098 0.902 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.104 0.896 42 H 0.404 0.596 43 H 0.076 0.924 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.501 -8.212 9.243 34.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.213 4.213 3 Si 0.783 3.217 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.157 1.157 7 C -0.455 4.455 8 H 0.076 0.924 9 N -0.233 5.233 10 C 0.242 3.758 11 O -0.487 6.487 12 C -0.089 4.089 13 N -0.225 5.225 14 C -0.101 4.101 15 C 0.044 3.956 16 H 0.115 0.885 17 N -0.346 5.346 18 C 0.331 3.669 19 O -0.451 6.451 20 C -0.263 4.263 21 C 0.249 3.751 22 F -0.198 7.198 23 F -0.189 7.189 24 C -0.155 4.155 25 C -0.149 4.149 26 C 0.051 3.949 27 H 0.104 0.896 28 O -0.372 6.372 29 C -0.121 4.121 30 H 0.089 0.911 31 H 0.224 0.776 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.258 0.742 37 H 0.188 0.812 38 H 0.116 0.884 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.123 0.877 42 H 0.256 0.744 43 H 0.095 0.905 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 32.131 -9.080 7.719 34.270 hybrid contribution -1.184 1.556 0.895 2.150 sum 30.947 -7.523 8.614 32.993 Atomic orbital electron populations 1.69801 1.08037 1.29230 1.50258 1.26081 0.96461 1.02597 0.96127 0.85393 0.79435 0.76973 0.79913 1.18263 1.19858 1.15715 1.18994 0.81265 0.94986 1.50288 0.92414 1.42027 1.05934 1.07469 1.67903 1.20634 0.90270 0.83482 0.81381 1.90523 1.71078 1.32456 1.54622 1.22028 0.91143 0.91233 1.04468 1.65043 1.10582 1.14890 1.31990 1.23568 0.87374 0.96884 1.02234 1.21647 0.82806 0.96872 0.94288 0.88547 1.45733 1.03933 1.71907 1.13038 1.19798 0.84922 0.75622 0.86532 1.90695 1.87815 1.49373 1.17187 1.22599 0.95630 0.97986 1.10053 1.21708 0.93951 0.81749 0.77734 1.92996 1.96644 1.61703 1.68504 1.92982 1.69045 1.96385 1.60442 1.23239 0.93197 1.00534 0.98574 1.23311 0.99707 0.92910 0.98954 1.22547 0.91708 0.97077 0.83548 0.89610 1.86221 1.40682 1.92198 1.18107 1.23863 1.00780 0.96902 0.90540 0.91118 0.77608 0.90232 0.86393 0.92545 0.89464 0.74202 0.81153 0.88352 0.83873 0.83467 0.87732 0.74375 0.90517 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.96 21.67 0.30 -56.10 16 2 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 3 Si 0.96 39.29 27.74 68.60 1.90 41.19 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.23 -8.10 6.52 99.48 0.65 -7.46 16 7 C -0.33 -19.20 10.16 84.04 0.85 -18.35 16 8 H 0.06 4.03 7.39 -2.91 -0.02 4.01 16 9 N -0.59 -28.34 5.09 -306.98 -1.56 -29.90 16 10 C 0.45 20.91 7.58 87.66 0.66 21.58 16 11 O -0.60 -33.28 14.42 -3.06 -0.04 -33.32 16 12 C 0.04 1.41 5.30 85.56 0.45 1.87 16 13 N -0.50 -16.06 5.06 -885.59 -4.48 -20.54 16 14 C 0.03 0.76 6.22 86.42 0.54 1.30 16 15 C 0.15 3.72 3.42 45.89 0.16 3.88 16 16 H 0.10 2.63 7.54 -2.38 -0.02 2.61 16 17 N -0.69 -15.19 4.77 -438.28 -2.09 -17.28 16 18 C 0.54 12.51 6.96 87.66 0.61 13.13 16 19 O -0.57 -17.45 16.14 -3.03 -0.05 -17.50 16 20 C -0.26 -3.52 2.07 -52.93 -0.11 -3.63 16 21 C 0.30 3.56 5.09 71.98 0.37 3.93 16 22 F -0.22 -4.18 17.14 44.97 0.77 -3.41 16 23 F -0.21 -3.17 15.95 44.97 0.72 -2.45 16 24 C -0.12 -1.02 9.73 30.62 0.30 -0.73 16 25 C -0.11 -0.72 9.96 30.62 0.30 -0.42 16 26 C 0.11 2.54 4.42 31.49 0.14 2.68 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 O -0.56 -9.92 11.51 -148.98 -1.71 -11.64 16 29 C 0.01 0.22 5.54 86.45 0.48 0.70 16 30 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.39 15.57 5.76 -92.71 -0.53 15.04 16 32 H 0.08 2.24 7.88 -2.39 -0.02 2.22 16 33 H 0.12 3.35 8.13 -2.39 -0.02 3.33 16 34 H 0.06 1.45 7.91 -2.39 -0.02 1.43 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.42 8.42 5.93 -92.71 -0.55 7.87 16 37 H 0.17 0.28 8.09 -2.39 -0.02 0.26 16 38 H 0.10 1.28 7.84 -2.39 -0.02 1.26 16 39 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 42 H 0.40 4.19 9.12 -74.06 -0.68 3.52 16 43 H 0.08 2.74 6.91 -2.39 -0.02 2.72 16 44 H 0.06 1.56 7.76 -2.39 -0.02 1.54 16 Total: -1.00 -84.90 373.74 -1.76 -86.66 By element: Atomic # 1 Polarization: 39.41 SS G_CDS: -0.73 Total: 38.67 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: 5.22 Total: 25.62 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -7.83 Total: -123.82 kcal Atomic # 8 Polarization: -60.66 SS G_CDS: -1.81 Total: -62.46 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 1.49 Total: -5.86 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.90 Total: 41.19 kcal Total: -84.90 -1.76 -86.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219627455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.423 kcal (2) G-P(sol) polarization free energy of solvation -84.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds