Wall clock time and date at job start Wed Apr 1 2020 04:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99920 * 2 1 4 4 H 1.48499 * 109.47128 * 240.00208 * 3 2 1 5 5 H 1.48508 * 109.46880 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47171 * 119.99644 * 3 2 1 7 7 C 1.37872 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00192 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.53489 * 114.20635 * 179.97438 * 9 7 2 11 11 N 1.47061 * 87.98359 * 220.14559 * 10 9 7 12 12 C 1.34784 * 136.05781 * 207.08576 * 11 10 9 13 13 S 1.71203 * 119.99819 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99889 * 180.02562 * 12 11 10 15 15 C 1.40147 * 119.99652 * 185.54159 * 14 12 11 16 16 C 1.38845 * 120.00040 * 41.88505 * 15 14 12 17 17 C 1.38074 * 120.00401 * 180.02562 * 16 15 14 18 18 C 1.38878 * 119.99342 * 359.97438 * 17 16 15 19 19 N 1.39922 * 119.99845 * 180.02562 * 18 17 16 20 20 C 1.47016 * 110.99728 * 179.97438 * 19 18 17 21 21 C 1.53097 * 109.25684 * 177.60928 * 20 19 18 22 22 O 1.43016 * 109.29730 * 56.82884 * 21 20 19 23 23 C 1.43021 * 113.73344 * 301.40105 * 22 21 20 24 24 C 1.47012 * 111.00011 * 56.36795 * 19 18 17 25 25 C 1.38873 * 119.99564 * 0.27725 * 18 17 16 26 26 C 1.38069 * 119.99522 * 359.44838 * 25 18 17 27 27 C 1.47065 * 87.88813 * 27.34180 * 11 10 9 28 28 H 0.96999 * 120.00297 * 0.02562 * 1 2 3 29 29 H 1.08998 * 113.27750 * 313.06542 * 9 7 2 30 30 H 1.09000 * 113.47122 * 105.36648 * 10 9 7 31 31 H 1.09000 * 113.52250 * 334.93268 * 10 9 7 32 32 H 0.96996 * 120.00409 * 5.52766 * 14 12 11 33 33 H 1.07997 * 120.00046 * 359.97438 * 16 15 14 34 34 H 1.07999 * 119.99577 * 180.02562 * 17 16 15 35 35 H 1.09005 * 109.50336 * 57.67670 * 20 19 18 36 36 H 1.08998 * 109.54269 * 297.56570 * 20 19 18 37 37 H 1.09005 * 109.50797 * 176.78764 * 21 20 19 38 38 H 1.09003 * 109.50732 * 296.87257 * 21 20 19 39 39 H 1.09000 * 109.47347 * 298.66399 * 23 22 21 40 40 H 1.08999 * 109.54504 * 178.58005 * 23 22 21 41 41 H 1.08999 * 109.50824 * 302.32530 * 24 19 18 42 42 H 1.08996 * 109.50818 * 62.45232 * 24 19 18 43 43 H 1.08005 * 120.00344 * 179.69765 * 25 18 17 44 44 H 1.08000 * 119.99898 * 180.27351 * 26 25 18 45 45 H 1.09004 * 113.46584 * 87.43747 * 27 11 10 46 46 H 1.08993 * 113.46975 * 217.87494 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.1489 -3.7441 0.0005 11 7 1.2074 -4.3593 -0.9470 12 6 0.8319 -5.6139 -1.2657 13 16 1.5334 -6.9491 -0.4556 14 7 -0.0949 -5.8174 -2.2228 15 6 -0.5703 -7.1116 -2.4740 16 6 -0.8531 -7.9649 -1.4157 17 6 -1.3209 -9.2401 -1.6631 18 6 -1.5091 -9.6692 -2.9705 19 7 -1.9837 -10.9613 -3.2213 20 6 -2.1090 -11.2054 -4.6656 21 6 -2.5728 -12.6462 -4.8958 22 8 -3.8041 -12.8630 -4.2014 23 6 -3.7183 -12.6338 -2.7922 24 6 -3.2664 -11.1927 -2.5412 25 6 -1.2213 -8.8175 -4.0289 26 6 -0.7588 -7.5403 -3.7811 27 6 0.8604 -3.0033 -1.3985 28 1 -0.4850 0.8400 -0.0004 29 1 0.4433 -2.5302 0.7317 30 1 2.1879 -4.2512 0.9646 31 1 3.1376 -3.5675 -0.4229 32 1 -0.4330 -5.0681 -2.7377 33 1 -0.7063 -7.6313 -0.3991 34 1 -1.5412 -9.9036 -0.8399 35 1 -1.1423 -11.0532 -5.1456 36 1 -2.8388 -10.5159 -5.0900 37 1 -2.7220 -12.8146 -5.9624 38 1 -1.8170 -13.3362 -4.5206 39 1 -2.9962 -13.3234 -2.3552 40 1 -4.6956 -12.7933 -2.3367 41 1 -3.1449 -11.0310 -1.4701 42 1 -4.0148 -10.5030 -2.9313 43 1 -1.3629 -9.1527 -5.0458 44 1 -0.5391 -6.8764 -4.6041 45 1 1.5092 -2.6304 -2.1911 46 1 -0.1982 -2.8792 -1.6263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247181548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:14 Heat of formation + Delta-G solvation = 42.574928 kcal Electronic energy + Delta-G solvation = -27061.642201 eV Core-core repulsion = 23271.561384 eV Total energy + Delta-G solvation = -3790.080816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70386 -41.18244 -39.97818 -38.12985 -35.98378 -34.71176 -32.77453 -32.10429 -31.57267 -29.96512 -27.85246 -27.28139 -26.63288 -25.67764 -24.28017 -23.03793 -22.83196 -21.33812 -21.20750 -19.50709 -18.98789 -18.62976 -18.39421 -17.26659 -17.16260 -16.71080 -16.48573 -16.37315 -16.13404 -15.90948 -15.75646 -15.26240 -15.02751 -14.99144 -14.67316 -14.42850 -14.09662 -13.72149 -13.45948 -13.43847 -13.23294 -12.95103 -12.86051 -12.71123 -12.60923 -12.38653 -12.33672 -12.20210 -11.89716 -11.61918 -11.31317 -11.29139 -11.13117 -10.65462 -10.58691 -10.05187 -9.96485 -8.97395 -8.78664 -8.33730 -8.23427 -6.35185 -0.07913 0.45460 0.57569 0.80246 1.42381 1.47806 1.50684 1.56570 2.16301 2.42547 2.50574 2.82889 2.93281 3.07079 3.75880 3.83582 3.91091 3.96389 3.99620 4.09777 4.13446 4.16581 4.21282 4.27518 4.35824 4.42238 4.50008 4.54309 4.58426 4.62025 4.68416 4.69249 4.77508 4.79280 4.85537 4.94402 5.02774 5.08836 5.19114 5.32095 5.49439 5.56108 5.73272 5.75726 5.83413 5.93820 6.10241 6.13825 6.23217 6.47747 6.74232 7.35909 8.85810 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.001874 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.945830 B =14936.254607 C =15216.089836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.072 0.928 9 C 0.031 3.969 10 C 0.124 3.876 11 N -0.587 5.587 12 C 0.601 3.399 13 S -0.736 6.736 14 N -0.622 5.622 15 C 0.093 3.907 16 C -0.061 4.061 17 C -0.136 4.136 18 C 0.109 3.891 19 N -0.494 5.494 20 C 0.011 3.989 21 C 0.062 3.938 22 O -0.402 6.402 23 C 0.063 3.937 24 C 0.020 3.980 25 C -0.162 4.162 26 C -0.095 4.095 27 C 0.095 3.905 28 H 0.266 0.734 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.418 0.582 33 H 0.119 0.881 34 H 0.133 0.867 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.122 0.878 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.049 0.951 43 H 0.156 0.844 44 H 0.147 0.853 45 H 0.101 0.899 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.406 -18.692 -12.177 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.090 0.910 9 C 0.011 3.989 10 C 0.002 3.998 11 N -0.292 5.292 12 C 0.240 3.760 13 S -0.605 6.605 14 N -0.248 5.248 15 C -0.001 4.001 16 C -0.083 4.083 17 C -0.158 4.158 18 C 0.011 3.989 19 N -0.211 5.211 20 C -0.116 4.116 21 C -0.015 4.015 22 O -0.321 6.321 23 C -0.014 4.014 24 C -0.106 4.106 25 C -0.184 4.184 26 C -0.116 4.116 27 C -0.030 4.030 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.257 0.743 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.140 0.860 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.116 0.884 42 H 0.068 0.932 43 H 0.173 0.827 44 H 0.164 0.836 45 H 0.119 0.881 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.003 -19.993 -11.580 24.451 hybrid contribution -0.175 2.660 -0.362 2.690 sum -8.178 -17.333 -11.941 22.581 Atomic orbital electron populations 1.70025 1.07386 1.28144 1.49766 1.25730 0.95533 1.02543 0.93808 0.85602 0.78311 0.78629 0.79110 1.19136 1.21485 1.19729 1.21101 0.93510 0.89856 1.52036 0.91016 1.20214 0.94713 0.91624 0.92305 1.23614 0.94187 0.90349 0.91613 1.49321 1.40092 1.02150 1.37636 1.21352 0.83088 0.87162 0.84399 1.93273 1.70300 1.31597 1.65379 1.42046 1.38245 1.09993 1.34565 1.17571 1.03363 0.84510 0.94626 1.21128 0.93819 0.94296 0.99098 1.20600 1.03651 0.95585 0.95979 1.19045 0.98188 0.88086 0.93604 1.59407 1.27304 1.22310 1.12042 1.23080 1.03075 0.98750 0.86708 1.22845 0.86091 0.93850 0.98731 1.87980 1.33935 1.89682 1.20477 1.22816 1.03301 0.93579 0.81674 1.22991 0.88130 0.98717 1.00764 1.21218 1.04983 0.92566 0.99594 1.20926 0.99847 0.96811 0.93997 1.24047 1.01247 0.75307 1.02377 0.92509 0.93665 0.90856 0.88064 0.74271 0.86324 0.84904 0.87913 0.92311 0.86008 0.92055 0.91841 0.86260 0.88426 0.93247 0.82704 0.83573 0.88122 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.09 13.26 21.45 0.28 -46.80 16 2 C 0.03 1.21 5.46 84.65 0.46 1.67 16 3 Si 0.96 38.54 29.54 68.60 2.03 40.56 16 4 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.29 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 7 C -0.53 -24.56 8.83 25.60 0.23 -24.33 16 8 H 0.07 3.22 7.81 -2.91 -0.02 3.20 16 9 C 0.03 1.33 3.79 -11.12 -0.04 1.29 16 10 C 0.12 4.70 7.91 83.18 0.66 5.35 16 11 N -0.59 -21.35 3.69 -745.93 -2.75 -24.10 16 12 C 0.60 21.99 7.88 179.05 1.41 23.40 16 13 S -0.74 -31.83 26.41 -56.49 -1.49 -33.32 16 14 N -0.62 -18.29 5.33 -189.83 -1.01 -19.31 16 15 C 0.09 2.61 5.91 38.10 0.23 2.84 16 16 C -0.06 -1.84 7.85 22.38 0.18 -1.67 16 17 C -0.14 -3.48 9.20 22.38 0.21 -3.27 16 18 C 0.11 2.37 5.64 38.15 0.22 2.58 16 19 N -0.49 -8.88 4.78 -694.12 -3.32 -12.19 16 20 C 0.01 0.14 4.33 86.31 0.37 0.52 16 21 C 0.06 0.74 7.01 72.01 0.50 1.24 16 22 O -0.40 -6.38 10.83 -148.98 -1.61 -8.00 16 23 C 0.06 0.81 7.01 72.02 0.50 1.32 16 24 C 0.02 0.30 5.41 86.32 0.47 0.76 16 25 C -0.16 -3.18 8.81 22.38 0.20 -2.98 16 26 C -0.09 -2.08 9.96 22.38 0.22 -1.86 16 27 C 0.09 3.42 7.88 83.27 0.66 4.08 16 28 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 29 H 0.05 2.20 8.11 -2.39 -0.02 2.18 16 30 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.10 3.60 8.10 -2.39 -0.02 3.58 16 32 H 0.42 10.11 8.55 -92.71 -0.79 9.32 16 33 H 0.12 4.25 6.27 -4.52 -0.03 4.22 16 34 H 0.13 3.08 7.20 -2.91 -0.02 3.06 16 35 H 0.10 1.20 7.21 -2.38 -0.02 1.18 16 36 H 0.06 0.77 7.55 -2.39 -0.02 0.75 16 37 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.10 1.40 6.86 -2.39 -0.02 1.39 16 42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.16 2.15 5.81 -2.91 -0.02 2.14 16 44 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 45 H 0.10 3.45 8.10 -2.38 -0.02 3.43 16 46 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -62.86 382.96 -1.21 -64.07 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.20 Total: 28.14 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 6.46 Total: 10.95 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -6.80 Total: -102.40 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -1.61 Total: -8.00 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.56 kcal Atomic # 16 Polarization: -31.83 SS G_CDS: -1.49 Total: -33.32 kcal Total: -62.86 -1.21 -64.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247181548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.648 kcal (2) G-P(sol) polarization free energy of solvation -62.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds