Wall clock time and date at job start Wed Apr 1 2020 05:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99909 * 2 1 4 4 H 1.48497 * 109.47254 * 270.00435 * 3 2 1 5 5 H 1.48504 * 109.46882 * 30.00285 * 3 2 1 6 6 H 1.48495 * 109.46703 * 150.00360 * 3 2 1 7 7 C 1.38811 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99988 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99756 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99840 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47129 * 179.97438 * 10 9 7 12 12 N 1.28680 * 124.92470 * 90.02196 * 11 10 9 13 13 C 1.32432 * 117.82438 * 180.02562 * 12 11 10 14 14 C 1.34630 * 113.30301 * 359.72882 * 13 12 11 15 15 S 1.70898 * 124.92845 * 270.00274 * 11 10 9 16 16 C 1.50983 * 125.55429 * 180.37617 * 14 13 12 17 17 C 1.53826 * 108.93764 * 342.16608 * 16 14 13 18 18 N 1.47076 * 108.31337 * 45.22380 * 17 16 14 19 19 C 1.34778 * 120.80071 * 115.24783 * 18 17 16 20 20 O 1.21284 * 119.99974 * 359.71641 * 19 18 17 21 21 C 1.50696 * 119.99739 * 179.72072 * 19 18 17 22 22 C 1.53007 * 109.47169 * 179.97438 * 21 19 18 23 23 H 1.08997 * 110.33971 * 52.71211 * 22 21 19 24 24 C 1.51098 * 110.38790 * 290.30488 * 22 21 19 25 25 C 1.30798 * 111.15292 * 224.77792 * 24 22 21 26 26 C 1.51106 * 110.94366 * 359.95455 * 25 24 22 27 27 C 1.54630 * 110.38584 * 174.99948 * 22 21 19 28 28 C 1.47026 * 118.39567 * 294.97247 * 18 17 16 29 29 H 0.96995 * 120.00047 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00124 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.47610 * 60.00070 * 10 9 7 32 32 H 1.08995 * 109.47363 * 299.99830 * 10 9 7 33 33 H 1.08996 * 109.55603 * 102.13384 * 16 14 13 34 34 H 1.09005 * 109.55339 * 222.34238 * 16 14 13 35 35 H 1.09001 * 109.75565 * 285.58050 * 17 16 14 36 36 H 1.09007 * 109.76235 * 164.86484 * 17 16 14 37 37 H 1.09004 * 109.47010 * 59.99623 * 21 19 18 38 38 H 1.08998 * 109.47365 * 299.99925 * 21 19 18 39 39 H 1.08002 * 124.45027 * 44.73435 * 24 22 21 40 40 H 1.08002 * 124.60922 * 179.97438 * 25 24 22 41 41 H 1.09002 * 110.38747 * 257.61980 * 26 25 24 42 42 H 1.09000 * 110.38500 * 135.35448 * 26 25 24 43 43 H 1.09004 * 111.04043 * 25.42005 * 27 22 21 44 44 H 1.09001 * 111.07445 * 261.49288 * 27 22 21 45 45 H 1.08993 * 109.81828 * 165.03538 * 28 18 17 46 46 H 1.09000 * 109.81309 * 285.87590 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0022 11 6 5.5938 -2.1954 -0.0032 12 7 6.3190 -2.0617 1.0513 13 6 7.6108 -1.8209 0.8867 14 6 7.9800 -1.7565 -0.4063 15 16 6.5547 -2.0160 -1.4050 16 6 9.3818 -1.5046 -0.9076 17 6 10.2183 -0.8990 0.2325 18 7 9.9544 -1.6680 1.4581 19 6 10.9319 -2.3851 2.0468 20 8 12.0441 -2.4058 1.5633 21 6 10.6431 -3.1613 3.3058 22 6 11.9129 -3.8819 3.7634 23 1 12.7413 -3.1778 3.8401 24 6 12.2566 -5.0007 2.8078 25 6 12.5814 -6.0905 3.4542 26 6 12.5080 -5.8746 4.9480 27 6 11.6747 -4.5834 5.1207 28 6 8.6000 -1.6305 2.0290 29 1 -0.4850 0.8400 0.0004 30 1 3.8647 -0.3620 -0.0007 31 1 3.8485 -3.0419 -0.8925 32 1 3.8492 -3.0430 0.8875 33 1 9.8282 -2.4449 -1.2307 34 1 9.3498 -0.8087 -1.7460 35 1 9.9339 0.1421 0.3853 36 1 11.2780 -0.9590 -0.0160 37 1 9.8605 -3.8943 3.1092 38 1 10.3118 -2.4769 4.0867 39 1 12.2362 -4.9129 1.7316 40 1 12.8648 -7.0208 2.9846 41 1 13.5074 -5.7398 5.3618 42 1 12.0089 -6.7158 5.4291 43 1 10.6189 -4.8151 5.2615 44 1 12.0541 -3.9803 5.9455 45 1 8.4834 -2.4335 2.7567 46 1 8.4287 -0.6678 2.5108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264747270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:43 Heat of formation + Delta-G solvation = 43.916814 kcal Electronic energy + Delta-G solvation = -27314.073770 eV Core-core repulsion = 23524.051142 eV Total energy + Delta-G solvation = -3790.022628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.87615 -39.71969 -38.56121 -36.58690 -34.89690 -33.11430 -31.85376 -31.40851 -30.12116 -29.21237 -27.23747 -26.77692 -25.32531 -23.62495 -22.91775 -21.72290 -20.86360 -19.96151 -18.95491 -18.46303 -18.23466 -17.60250 -17.01320 -16.54962 -16.11879 -15.77856 -15.43416 -15.06813 -14.84883 -14.50566 -14.10347 -14.00202 -13.85606 -13.40940 -13.17036 -12.94004 -12.81298 -12.69872 -12.41881 -12.33597 -12.17988 -12.12804 -12.01701 -11.68620 -11.55604 -11.43322 -11.27930 -11.20761 -11.09704 -10.93636 -10.26397 -10.06818 -9.68854 -9.48850 -9.22432 -9.15827 -9.03911 -9.00563 -8.60880 -7.37819 -5.84951 -3.23060 0.71356 1.36617 1.82388 2.02414 2.31499 2.55457 2.74438 3.33059 3.36914 3.40758 3.90424 4.09973 4.28154 4.39326 4.50817 4.52504 4.59250 4.62461 4.82439 4.88822 4.90992 5.00544 5.06495 5.10312 5.14603 5.21982 5.25988 5.31167 5.43271 5.43674 5.49331 5.50407 5.54687 5.57479 5.61729 5.64944 5.82906 5.95318 6.01898 6.03335 6.27738 6.30323 6.33798 6.63323 7.00935 7.79598 7.84833 7.86938 8.32269 9.08061 9.80553 9.98504 11.32549 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016780 B = 0.002323 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.228951 B =12050.757613 C =12586.022005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.011 3.989 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.095 0.905 9 N -0.746 5.746 10 C 0.229 3.771 11 C 0.068 3.932 12 N -0.462 5.462 13 C 0.044 3.956 14 C -0.234 4.234 15 S 0.136 5.864 16 C -0.053 4.053 17 C 0.115 3.885 18 N -0.615 5.615 19 C 0.523 3.477 20 O -0.536 6.536 21 C -0.136 4.136 22 C -0.053 4.053 23 H 0.090 0.910 24 C -0.144 4.144 25 C -0.180 4.180 26 C -0.100 4.100 27 C -0.123 4.123 28 C 0.193 3.807 29 H 0.261 0.739 30 H 0.364 0.636 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.954 -7.671 5.227 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.185 4.185 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.113 0.887 9 N -0.394 5.394 10 C 0.099 3.901 11 C -0.211 4.211 12 N -0.176 5.176 13 C -0.089 4.089 14 C -0.356 4.356 15 S 0.394 5.606 16 C -0.094 4.094 17 C -0.009 4.009 18 N -0.349 5.349 19 C 0.312 3.688 20 O -0.413 6.413 21 C -0.175 4.175 22 C -0.071 4.071 23 H 0.108 0.892 24 C -0.162 4.162 25 C -0.198 4.198 26 C -0.137 4.137 27 C -0.161 4.161 28 C 0.067 3.933 29 H 0.071 0.929 30 H 0.196 0.804 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.123 0.877 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 26.786 -7.869 4.387 28.261 hybrid contribution 0.799 1.386 0.521 1.682 sum 27.585 -6.484 4.908 28.759 Atomic orbital electron populations 1.69690 1.05018 1.26024 1.56822 1.24631 0.95205 0.97169 1.01532 0.86593 0.79348 0.85034 0.77911 1.20862 1.21445 1.20350 1.18991 0.79798 0.95048 1.43993 0.88736 1.42616 1.04069 1.01267 1.91421 1.19306 0.79078 0.90646 1.01032 1.27360 1.02174 1.01727 0.89848 1.65789 1.03947 1.15534 1.32347 1.20869 0.90741 1.03889 0.93420 1.25882 1.00328 1.13025 0.96342 1.84014 0.98348 1.65451 1.12790 1.20560 0.88317 1.02248 0.98237 1.21753 1.01255 0.94783 0.83066 1.48135 1.10163 1.49071 1.27487 1.20695 0.83980 0.78368 0.85776 1.90691 1.22163 1.62976 1.65429 1.21814 1.00279 0.99937 0.95505 1.20821 0.96507 0.96347 0.93431 0.89170 1.23341 0.99318 0.94134 0.99369 1.23334 1.02214 0.98513 0.95706 1.21338 1.00182 0.97748 0.94407 1.22573 1.00721 0.96276 0.96492 1.20252 0.77565 1.03792 0.91690 0.92855 0.80354 0.93028 0.92007 0.89831 0.89248 0.90464 0.87825 0.88407 0.88372 0.85912 0.86022 0.90885 0.91267 0.90707 0.90742 0.87671 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.97 55.49 0.78 -27.89 16 2 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 3 Si 0.88 21.99 27.74 -169.99 -4.71 17.27 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.67 6.52 56.52 0.37 -6.31 16 7 C -0.25 -6.91 10.47 -15.06 -0.16 -7.06 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.75 -17.69 5.40 -61.09 -0.33 -18.02 16 10 C 0.23 4.42 6.84 -5.19 -0.04 4.39 16 11 C 0.07 1.16 6.75 -13.60 -0.09 1.07 16 12 N -0.46 -7.69 10.51 -7.28 -0.08 -7.77 16 13 C 0.04 0.61 6.87 -82.81 -0.57 0.04 16 14 C -0.23 -2.98 6.43 -35.45 -0.23 -3.21 16 15 S 0.14 1.91 23.17 -107.50 -2.49 -0.58 16 16 C -0.05 -0.51 6.46 -27.32 -0.18 -0.69 16 17 C 0.12 1.06 6.45 -3.30 -0.02 1.04 16 18 N -0.61 -6.05 2.91 -172.71 -0.50 -6.56 16 19 C 0.52 5.35 7.50 -10.99 -0.08 5.27 16 20 O -0.54 -6.94 14.35 5.55 0.08 -6.86 16 21 C -0.14 -1.04 3.49 -27.88 -0.10 -1.14 16 22 C -0.05 -0.43 2.52 -90.72 -0.23 -0.66 16 23 H 0.09 0.82 7.90 -51.93 -0.41 0.41 16 24 C -0.14 -1.33 9.27 -35.78 -0.33 -1.66 16 25 C -0.18 -1.46 10.80 -35.77 -0.39 -1.84 16 26 C -0.10 -0.67 6.80 -26.82 -0.18 -0.86 16 27 C -0.12 -0.80 6.71 -25.01 -0.17 -0.96 16 28 C 0.19 1.96 6.64 -4.11 -0.03 1.93 16 29 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.36 8.65 5.52 -40.82 -0.23 8.42 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.95 7.01 -51.93 -0.36 0.59 16 37 H 0.10 0.72 7.55 -51.93 -0.39 0.33 16 38 H 0.10 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.12 1.28 7.59 -52.49 -0.40 0.89 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.45 7.91 -51.93 -0.41 0.04 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.11 0.91 6.15 -51.93 -0.32 0.59 16 46 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 383.70 15.07 5.78 5.78 Total: -1.00 -33.14 383.70 -11.12 -44.25 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.76 Total: 4.48 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.88 Total: -4.12 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.13 Total: -60.23 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: 0.08 Total: -6.86 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.49 Total: -0.58 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.14 -11.12 -44.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264747270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.171 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds