Wall clock time and date at job start Wed Apr 1 2020 05:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99909 * 2 1 4 4 H 1.48497 * 109.47254 * 270.00435 * 3 2 1 5 5 H 1.48504 * 109.46882 * 30.00285 * 3 2 1 6 6 H 1.48495 * 109.46703 * 150.00360 * 3 2 1 7 7 C 1.38811 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99988 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99756 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99840 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47129 * 179.97438 * 10 9 7 12 12 N 1.28680 * 124.92470 * 90.02196 * 11 10 9 13 13 C 1.32432 * 117.82438 * 180.02562 * 12 11 10 14 14 C 1.34630 * 113.30301 * 359.72882 * 13 12 11 15 15 S 1.70898 * 124.92845 * 270.00274 * 11 10 9 16 16 C 1.50983 * 125.55429 * 180.37617 * 14 13 12 17 17 C 1.53826 * 108.93764 * 342.16608 * 16 14 13 18 18 N 1.47076 * 108.31337 * 45.22380 * 17 16 14 19 19 C 1.34778 * 120.80071 * 115.24783 * 18 17 16 20 20 O 1.21284 * 119.99974 * 359.71641 * 19 18 17 21 21 C 1.50696 * 119.99739 * 179.72072 * 19 18 17 22 22 C 1.53007 * 109.47169 * 179.97438 * 21 19 18 23 23 H 1.08997 * 110.33971 * 52.71211 * 22 21 19 24 24 C 1.51098 * 110.38790 * 290.30488 * 22 21 19 25 25 C 1.30798 * 111.15292 * 224.77792 * 24 22 21 26 26 C 1.51106 * 110.94366 * 359.95455 * 25 24 22 27 27 C 1.54630 * 110.38584 * 174.99948 * 22 21 19 28 28 C 1.47026 * 118.39567 * 294.97247 * 18 17 16 29 29 H 0.96995 * 120.00047 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00124 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.47610 * 60.00070 * 10 9 7 32 32 H 1.08995 * 109.47363 * 299.99830 * 10 9 7 33 33 H 1.08996 * 109.55603 * 102.13384 * 16 14 13 34 34 H 1.09005 * 109.55339 * 222.34238 * 16 14 13 35 35 H 1.09001 * 109.75565 * 285.58050 * 17 16 14 36 36 H 1.09007 * 109.76235 * 164.86484 * 17 16 14 37 37 H 1.09004 * 109.47010 * 59.99623 * 21 19 18 38 38 H 1.08998 * 109.47365 * 299.99925 * 21 19 18 39 39 H 1.08002 * 124.45027 * 44.73435 * 24 22 21 40 40 H 1.08002 * 124.60922 * 179.97438 * 25 24 22 41 41 H 1.09002 * 110.38747 * 257.61980 * 26 25 24 42 42 H 1.09000 * 110.38500 * 135.35448 * 26 25 24 43 43 H 1.09004 * 111.04043 * 25.42005 * 27 22 21 44 44 H 1.09001 * 111.07445 * 261.49288 * 27 22 21 45 45 H 1.08993 * 109.81828 * 165.03538 * 28 18 17 46 46 H 1.09000 * 109.81309 * 285.87590 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0022 11 6 5.5938 -2.1954 -0.0032 12 7 6.3190 -2.0617 1.0513 13 6 7.6108 -1.8209 0.8867 14 6 7.9800 -1.7565 -0.4063 15 16 6.5547 -2.0160 -1.4050 16 6 9.3818 -1.5046 -0.9076 17 6 10.2183 -0.8990 0.2325 18 7 9.9544 -1.6680 1.4581 19 6 10.9319 -2.3851 2.0468 20 8 12.0441 -2.4058 1.5633 21 6 10.6431 -3.1613 3.3058 22 6 11.9129 -3.8819 3.7634 23 1 12.7413 -3.1778 3.8401 24 6 12.2566 -5.0007 2.8078 25 6 12.5814 -6.0905 3.4542 26 6 12.5080 -5.8746 4.9480 27 6 11.6747 -4.5834 5.1207 28 6 8.6000 -1.6305 2.0290 29 1 -0.4850 0.8400 0.0004 30 1 3.8647 -0.3620 -0.0007 31 1 3.8485 -3.0419 -0.8925 32 1 3.8492 -3.0430 0.8875 33 1 9.8282 -2.4449 -1.2307 34 1 9.3498 -0.8087 -1.7460 35 1 9.9339 0.1421 0.3853 36 1 11.2780 -0.9590 -0.0160 37 1 9.8605 -3.8943 3.1092 38 1 10.3118 -2.4769 4.0867 39 1 12.2362 -4.9129 1.7316 40 1 12.8648 -7.0208 2.9846 41 1 13.5074 -5.7398 5.3618 42 1 12.0089 -6.7158 5.4291 43 1 10.6189 -4.8151 5.2615 44 1 12.0541 -3.9803 5.9455 45 1 8.4834 -2.4335 2.7567 46 1 8.4287 -0.6678 2.5108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264747270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:42 Heat of formation + Delta-G solvation = 23.883759 kcal Electronic energy + Delta-G solvation = -27314.942468 eV Core-core repulsion = 23524.051142 eV Total energy + Delta-G solvation = -3790.891326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73846 -40.65951 -39.25228 -37.61444 -36.58655 -34.01806 -33.62842 -32.20008 -31.35572 -29.77539 -28.72538 -27.55089 -26.07628 -25.10957 -23.99131 -23.21131 -21.44414 -20.86838 -20.06942 -19.65661 -19.13632 -19.00172 -17.84565 -17.35079 -16.87561 -16.78024 -16.59579 -16.20696 -16.00619 -15.79530 -15.13851 -15.11124 -14.89234 -14.76661 -14.28673 -14.13958 -14.05166 -13.68660 -13.54126 -13.26619 -13.12565 -12.97287 -12.87519 -12.78402 -12.67653 -12.42641 -12.20490 -12.16469 -12.06658 -11.98371 -11.86073 -11.70690 -11.09409 -10.87273 -10.65200 -10.27843 -9.88702 -9.77828 -9.67700 -9.41398 -8.06169 -5.42290 -0.42387 0.26136 0.69710 1.35271 1.37423 1.37459 1.44529 1.53859 1.60929 1.81548 2.44413 2.88066 3.25540 3.39662 3.62201 3.68247 3.71767 3.77167 3.83086 3.86911 3.97738 4.15342 4.24024 4.27378 4.34125 4.43287 4.47706 4.54803 4.59975 4.66641 4.71775 4.73804 4.75874 4.81907 4.84632 4.98086 5.00639 5.09079 5.10868 5.26313 5.31128 5.42450 5.67481 5.69032 5.98425 6.15546 6.24016 6.67926 6.98758 7.07159 7.71035 7.90908 9.14367 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016780 B = 0.002323 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.228951 B =12050.757613 C =12586.022005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.055 4.055 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.262 1.262 7 C -0.236 4.236 8 H 0.068 0.932 9 N -0.749 5.749 10 C 0.231 3.769 11 C 0.031 3.969 12 N -0.476 5.476 13 C 0.027 3.973 14 C -0.222 4.222 15 S 0.163 5.837 16 C -0.051 4.051 17 C 0.114 3.886 18 N -0.614 5.614 19 C 0.521 3.479 20 O -0.567 6.567 21 C -0.132 4.132 22 C -0.051 4.051 23 H 0.076 0.924 24 C -0.167 4.167 25 C -0.176 4.176 26 C -0.102 4.102 27 C -0.118 4.118 28 C 0.197 3.803 29 H 0.260 0.740 30 H 0.365 0.635 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.121 0.879 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.411 -7.091 5.897 30.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.247 4.247 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.367 4.367 8 H 0.086 0.914 9 N -0.396 5.396 10 C 0.102 3.898 11 C -0.247 4.247 12 N -0.191 5.191 13 C -0.106 4.106 14 C -0.344 4.344 15 S 0.421 5.579 16 C -0.091 4.091 17 C -0.010 4.010 18 N -0.347 5.347 19 C 0.312 3.688 20 O -0.446 6.446 21 C -0.171 4.171 22 C -0.069 4.069 23 H 0.095 0.905 24 C -0.185 4.185 25 C -0.194 4.194 26 C -0.139 4.139 27 C -0.156 4.156 28 C 0.071 3.929 29 H 0.069 0.931 30 H 0.197 0.803 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.140 0.860 39 H 0.121 0.879 40 H 0.146 0.854 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.139 0.861 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 29.270 -7.318 5.056 30.592 hybrid contribution 0.149 1.060 0.259 1.102 sum 29.420 -6.258 5.315 30.544 Atomic orbital electron populations 1.69855 1.06865 1.26820 1.59068 1.25411 0.96049 1.00946 1.02287 0.85499 0.78368 0.80192 0.78283 1.19928 1.21818 1.18770 1.18983 0.81695 0.94002 1.41986 0.91439 1.42588 1.02737 1.03044 1.91263 1.19240 0.80876 0.88698 1.00994 1.26800 1.01339 1.04891 0.91630 1.65749 1.05307 1.15143 1.32898 1.21336 0.90214 1.04148 0.94911 1.26348 1.01140 1.10912 0.95974 1.83843 0.98212 1.64595 1.11225 1.20697 0.86332 1.03048 0.99053 1.21826 1.01149 0.95305 0.82692 1.48186 1.09971 1.48868 1.27645 1.21121 0.83480 0.78007 0.86229 1.90681 1.23453 1.64024 1.66417 1.21860 1.00228 1.00145 0.94905 1.20792 0.96238 0.95811 0.94107 0.90540 1.23337 1.01060 0.95327 0.98757 1.23595 1.00718 0.98360 0.96749 1.21402 1.00813 0.98384 0.93281 1.22587 1.01218 0.95980 0.95782 1.20374 0.76616 1.05130 0.90757 0.93096 0.80251 0.92027 0.92756 0.89465 0.87175 0.89261 0.87831 0.87850 0.86007 0.87864 0.85424 0.90246 0.90214 0.89946 0.89416 0.86105 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.60 13.97 21.65 0.30 -61.30 16 2 C -0.05 -3.19 5.50 84.86 0.47 -2.72 16 3 Si 0.95 45.35 27.74 68.60 1.90 47.25 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.26 -11.74 6.52 99.48 0.65 -11.10 16 7 C -0.24 -13.28 10.47 84.03 0.88 -12.40 16 8 H 0.07 4.08 8.06 -2.91 -0.02 4.06 16 9 N -0.75 -35.22 5.40 -347.17 -1.87 -37.10 16 10 C 0.23 8.87 6.84 85.63 0.59 9.45 16 11 C 0.03 1.03 6.75 88.57 0.60 1.63 16 12 N -0.48 -15.12 10.51 -176.95 -1.86 -16.97 16 13 C 0.03 0.68 6.87 42.16 0.29 0.97 16 14 C -0.22 -5.10 6.43 24.95 0.16 -4.94 16 15 S 0.16 4.28 23.17 -56.49 -1.31 2.97 16 16 C -0.05 -0.84 6.46 30.22 0.20 -0.64 16 17 C 0.11 1.81 6.45 86.55 0.56 2.37 16 18 N -0.61 -10.62 2.91 -818.73 -2.38 -13.00 16 19 C 0.52 9.81 7.50 87.66 0.66 10.47 16 20 O -0.57 -14.24 14.35 -3.04 -0.04 -14.29 16 21 C -0.13 -1.76 3.49 29.85 0.10 -1.65 16 22 C -0.05 -0.76 2.52 -10.86 -0.03 -0.78 16 23 H 0.08 1.34 7.90 -2.39 -0.02 1.32 16 24 C -0.17 -3.00 9.27 25.98 0.24 -2.76 16 25 C -0.18 -2.67 10.80 25.98 0.28 -2.39 16 26 C -0.10 -1.17 6.80 30.53 0.21 -0.96 16 27 C -0.12 -1.25 6.71 31.71 0.21 -1.04 16 28 C 0.20 3.45 6.64 86.05 0.57 4.02 16 29 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.36 16.85 5.52 -92.71 -0.51 16.34 16 31 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.10 1.70 7.01 -2.38 -0.02 1.68 16 37 H 0.10 1.29 7.55 -2.38 -0.02 1.28 16 38 H 0.12 1.04 8.09 -2.39 -0.02 1.02 16 39 H 0.10 2.22 7.59 -2.91 -0.02 2.20 16 40 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 0.76 7.91 -2.39 -0.02 0.74 16 44 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.12 1.73 6.15 -2.39 -0.01 1.72 16 46 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -72.23 383.70 1.15 -71.08 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.43 Total: 22.75 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 5.98 Total: -1.39 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -5.81 Total: -128.38 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.04 Total: -14.29 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.31 Total: 2.97 kcal Total: -72.23 1.15 -71.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264747270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.966 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds