Wall clock time and date at job start Wed Apr 1 2020 05:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00100 * 2 1 4 4 H 1.48499 * 109.46924 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47059 * 300.00047 * 3 2 1 6 6 H 1.48493 * 109.47310 * 60.00398 * 3 2 1 7 7 C 1.38812 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00039 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00028 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99918 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47348 * 180.02562 * 10 9 7 12 12 N 1.28675 * 124.92822 * 89.96807 * 11 10 9 13 13 C 1.32438 * 117.82501 * 180.14319 * 12 11 10 14 14 C 1.34638 * 113.29790 * 359.64781 * 13 12 11 15 15 S 1.70904 * 124.92299 * 270.00304 * 11 10 9 16 16 C 1.50982 * 125.54664 * 180.39878 * 14 13 12 17 17 C 1.53299 * 109.04534 * 342.06826 * 16 14 13 18 18 N 1.47298 * 108.47983 * 45.04562 * 17 16 14 19 19 C 1.34779 * 120.76111 * 115.33920 * 18 17 16 20 20 O 1.21288 * 119.99660 * 359.96923 * 19 18 17 21 21 C 1.50693 * 120.00209 * 179.97438 * 19 18 17 22 22 C 1.53000 * 109.47148 * 179.97438 * 21 19 18 23 23 H 1.08989 * 110.34756 * 307.28438 * 22 21 19 24 24 C 1.51108 * 110.38716 * 69.69492 * 22 21 19 25 25 C 1.30526 * 111.10717 * 135.24752 * 24 22 21 26 26 C 1.51098 * 111.10133 * 359.97438 * 25 24 22 27 27 C 1.54634 * 104.72950 * 343.56207 * 26 25 24 28 28 C 1.47032 * 118.44684 * 295.31030 * 18 17 16 29 29 H 0.96996 * 119.99770 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99581 * 359.97438 * 9 7 2 31 31 H 1.08991 * 109.47631 * 59.99527 * 10 9 7 32 32 H 1.09005 * 109.47219 * 299.99676 * 10 9 7 33 33 H 1.09002 * 109.55689 * 101.96576 * 16 14 13 34 34 H 1.08997 * 109.55527 * 222.17394 * 16 14 13 35 35 H 1.09004 * 109.61078 * 164.85732 * 17 16 14 36 36 H 1.09001 * 109.61401 * 285.37905 * 17 16 14 37 37 H 1.09002 * 109.46986 * 299.99140 * 21 19 18 38 38 H 1.09002 * 109.47795 * 59.99372 * 21 19 18 39 39 H 1.08001 * 124.44642 * 315.23003 * 24 22 21 40 40 H 1.07997 * 124.45038 * 179.97438 * 25 24 22 41 41 H 1.09007 * 110.38931 * 224.75030 * 26 25 24 42 42 H 1.09008 * 110.38641 * 102.37685 * 26 25 24 43 43 H 1.08999 * 111.03823 * 266.60298 * 27 26 25 44 44 H 1.08998 * 111.03738 * 142.66267 * 27 26 25 45 45 H 1.08995 * 109.81418 * 285.70310 * 28 18 17 46 46 H 1.08997 * 109.86791 * 164.82422 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0786 -4.8023 -0.0012 12 7 0.5999 -5.3617 -1.0565 13 6 -0.2563 -6.3588 -0.8932 14 6 -0.4965 -6.6482 0.3995 15 16 0.4423 -5.5462 1.3997 16 6 -1.4169 -7.7358 0.8992 17 6 -2.3604 -8.1528 -0.2348 18 7 -1.5694 -8.3051 -1.4680 19 6 -1.4428 -9.5084 -2.0617 20 8 -1.9831 -10.4818 -1.5804 21 6 -0.6299 -9.6446 -3.3232 22 6 -0.6471 -11.1027 -3.7862 23 1 -0.3435 -11.7621 -2.9732 24 6 -2.0219 -11.4797 -4.2874 25 6 -1.9474 -12.1477 -5.4063 26 6 -0.5106 -12.3270 -5.8383 27 6 0.2817 -11.2902 -5.0085 28 6 -0.9219 -7.1136 -2.0364 29 1 -0.4849 0.8400 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.6846 -3.7146 0.8893 32 1 2.6846 -3.7146 -0.8906 33 1 -0.8270 -8.5952 1.2178 34 1 -2.0005 -7.3618 1.7404 35 1 -2.8374 -9.1003 0.0159 36 1 -3.1202 -7.3848 -0.3798 37 1 -1.0570 -9.0112 -4.1007 38 1 0.3977 -9.3377 -3.1283 39 1 -2.9449 -11.2296 -3.7855 40 1 -2.8007 -12.5229 -5.9518 41 1 -0.4058 -12.1209 -6.9035 42 1 -0.1689 -13.3367 -5.6106 43 1 0.3989 -10.3563 -5.5582 44 1 1.2501 -11.6886 -4.7062 45 1 -1.6690 -6.4788 -2.5127 46 1 -0.1713 -7.4132 -2.7677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264747271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:46 Heat of formation + Delta-G solvation = 39.800469 kcal Electronic energy + Delta-G solvation = -27135.047166 eV Core-core repulsion = 23344.846040 eV Total energy + Delta-G solvation = -3790.201126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.78234 -39.62162 -38.51074 -36.47934 -34.69388 -33.04965 -31.76592 -31.31615 -29.81230 -29.19903 -26.84450 -26.68706 -25.24971 -23.66533 -22.95352 -21.81419 -20.82571 -19.85553 -18.93944 -18.17327 -18.07627 -17.27684 -16.84238 -16.49060 -16.21954 -15.71691 -15.20969 -15.04330 -14.80962 -14.34488 -14.08053 -13.81416 -13.67563 -13.47591 -13.16797 -12.81518 -12.74276 -12.59337 -12.30984 -12.23855 -12.14378 -12.08861 -11.83000 -11.57906 -11.50045 -11.36156 -11.09357 -11.05818 -10.98300 -10.88122 -10.14017 -9.99493 -9.86615 -9.35659 -9.15064 -9.10516 -8.97230 -8.92047 -8.46261 -7.06072 -5.84008 -3.15580 0.85985 1.51092 1.96930 2.05690 2.39155 2.63484 2.88519 3.39948 3.45467 3.47872 4.01223 4.17937 4.32101 4.44565 4.54333 4.56247 4.67622 4.73444 4.89036 5.00068 5.01770 5.05934 5.12595 5.20591 5.23826 5.26230 5.33459 5.39117 5.48985 5.52003 5.52486 5.58352 5.65149 5.68052 5.76976 5.86469 5.95715 5.99106 6.11014 6.15247 6.32737 6.38683 6.43447 6.66415 7.09548 7.62211 7.89412 7.98122 8.31611 9.44174 9.94987 10.31295 11.38329 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.002117 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.432706 B =13222.265994 C =14105.289085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.723 5.723 10 C 0.224 3.776 11 C 0.076 3.924 12 N -0.464 5.464 13 C 0.046 3.954 14 C -0.237 4.237 15 S 0.136 5.864 16 C -0.053 4.053 17 C 0.116 3.884 18 N -0.614 5.614 19 C 0.523 3.477 20 O -0.538 6.538 21 C -0.136 4.136 22 C -0.053 4.053 23 H 0.090 0.910 24 C -0.142 4.142 25 C -0.181 4.181 26 C -0.099 4.099 27 C -0.123 4.123 28 C 0.193 3.807 29 H 0.256 0.744 30 H 0.387 0.613 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.179 -24.134 -5.703 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.369 5.369 10 C 0.094 3.906 11 C -0.203 4.203 12 N -0.178 5.178 13 C -0.088 4.088 14 C -0.359 4.359 15 S 0.394 5.606 16 C -0.093 4.093 17 C -0.008 4.008 18 N -0.348 5.348 19 C 0.312 3.688 20 O -0.414 6.414 21 C -0.175 4.175 22 C -0.072 4.072 23 H 0.108 0.892 24 C -0.160 4.160 25 C -0.198 4.198 26 C -0.137 4.137 27 C -0.161 4.161 28 C 0.067 3.933 29 H 0.066 0.934 30 H 0.221 0.779 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.110 0.890 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.971 -24.145 -4.852 24.806 hybrid contribution -0.305 0.818 -0.593 1.055 sum -3.276 -23.327 -5.445 24.177 Atomic orbital electron populations 1.69688 1.05204 1.25780 1.57031 1.24787 0.95575 0.97836 1.02464 0.86054 0.78783 0.83701 0.77225 1.20388 1.21745 1.21766 1.19246 0.91176 0.83478 1.43608 0.90671 1.42273 1.05969 0.98894 1.89783 1.19339 0.89913 0.81208 1.00169 1.27306 1.01900 1.01391 0.89740 1.65775 1.10976 1.08723 1.32322 1.20840 0.98327 0.96297 0.93354 1.25841 1.08293 1.05367 0.96369 1.83968 1.38142 1.25580 1.12895 1.20453 0.95724 0.94856 0.98269 1.21686 0.92946 1.03244 0.82952 1.48188 1.51357 1.08174 1.27074 1.20680 0.80730 0.81763 0.85670 1.90687 1.48185 1.36874 1.65693 1.21808 1.01155 0.99050 0.95511 1.20836 0.93701 0.94611 0.98029 0.89204 1.23278 0.97957 0.98725 0.96048 1.23252 0.97530 1.01045 0.98019 1.21339 0.92932 0.99381 1.00000 1.22577 0.98147 0.99617 0.95741 1.20245 0.96331 0.84945 0.91736 0.93392 0.77949 0.93960 0.92854 0.89987 0.89252 0.87900 0.90424 0.88395 0.88418 0.85839 0.86097 0.91286 0.90898 0.90695 0.90769 0.88989 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.72 -18.28 5.59 -61.09 -0.34 -18.62 16 10 C 0.22 4.54 6.84 -5.19 -0.04 4.51 16 11 C 0.08 1.37 6.75 -13.60 -0.09 1.28 16 12 N -0.46 -8.20 10.51 -7.28 -0.08 -8.27 16 13 C 0.05 0.67 6.87 -82.81 -0.57 0.10 16 14 C -0.24 -3.24 6.43 -35.44 -0.23 -3.47 16 15 S 0.14 2.05 23.17 -107.50 -2.49 -0.44 16 16 C -0.05 -0.55 6.43 -27.59 -0.18 -0.73 16 17 C 0.12 1.16 6.42 -3.45 -0.02 1.13 16 18 N -0.61 -6.51 2.92 -172.86 -0.51 -7.02 16 19 C 0.52 5.67 7.50 -10.99 -0.08 5.59 16 20 O -0.54 -7.25 14.35 5.55 0.08 -7.17 16 21 C -0.14 -1.11 3.49 -27.89 -0.10 -1.21 16 22 C -0.05 -0.45 2.52 -90.70 -0.23 -0.68 16 23 H 0.09 0.88 7.90 -51.94 -0.41 0.47 16 24 C -0.14 -1.31 9.26 -35.69 -0.33 -1.64 16 25 C -0.18 -1.45 10.78 -35.70 -0.38 -1.83 16 26 C -0.10 -0.68 6.81 -26.83 -0.18 -0.87 16 27 C -0.12 -0.84 6.71 -25.00 -0.17 -1.01 16 28 C 0.19 2.13 6.65 -4.11 -0.03 2.10 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.39 10.51 7.66 -40.82 -0.31 10.20 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 1.02 7.02 -51.93 -0.36 0.65 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.10 0.71 7.57 -51.93 -0.39 0.32 16 39 H 0.12 1.26 7.58 -52.49 -0.40 0.86 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 42 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 43 H 0.07 0.47 7.91 -51.93 -0.41 0.06 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.10 0.97 6.16 -51.93 -0.32 0.65 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -32.49 386.78 -11.48 -43.97 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.80 Total: 5.88 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -2.87 Total: -3.98 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -0.20 Total: -61.08 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: 0.08 Total: -7.17 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.49 Total: -0.44 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.49 -11.48 -43.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264747271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.773 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds