Wall clock time and date at job start Wed Apr 1 2020 05:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00100 * 2 1 4 4 H 1.48499 * 109.46924 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47059 * 300.00047 * 3 2 1 6 6 H 1.48493 * 109.47310 * 60.00398 * 3 2 1 7 7 C 1.38812 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00039 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00028 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99918 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47348 * 180.02562 * 10 9 7 12 12 N 1.28675 * 124.92822 * 89.96807 * 11 10 9 13 13 C 1.32438 * 117.82501 * 180.14319 * 12 11 10 14 14 C 1.34638 * 113.29790 * 359.64781 * 13 12 11 15 15 S 1.70904 * 124.92299 * 270.00304 * 11 10 9 16 16 C 1.50982 * 125.54664 * 180.39878 * 14 13 12 17 17 C 1.53299 * 109.04534 * 342.06826 * 16 14 13 18 18 N 1.47298 * 108.47983 * 45.04562 * 17 16 14 19 19 C 1.34779 * 120.76111 * 115.33920 * 18 17 16 20 20 O 1.21288 * 119.99660 * 359.96923 * 19 18 17 21 21 C 1.50693 * 120.00209 * 179.97438 * 19 18 17 22 22 C 1.53000 * 109.47148 * 179.97438 * 21 19 18 23 23 H 1.08989 * 110.34756 * 307.28438 * 22 21 19 24 24 C 1.51108 * 110.38716 * 69.69492 * 22 21 19 25 25 C 1.30526 * 111.10717 * 135.24752 * 24 22 21 26 26 C 1.51098 * 111.10133 * 359.97438 * 25 24 22 27 27 C 1.54634 * 104.72950 * 343.56207 * 26 25 24 28 28 C 1.47032 * 118.44684 * 295.31030 * 18 17 16 29 29 H 0.96996 * 119.99770 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99581 * 359.97438 * 9 7 2 31 31 H 1.08991 * 109.47631 * 59.99527 * 10 9 7 32 32 H 1.09005 * 109.47219 * 299.99676 * 10 9 7 33 33 H 1.09002 * 109.55689 * 101.96576 * 16 14 13 34 34 H 1.08997 * 109.55527 * 222.17394 * 16 14 13 35 35 H 1.09004 * 109.61078 * 164.85732 * 17 16 14 36 36 H 1.09001 * 109.61401 * 285.37905 * 17 16 14 37 37 H 1.09002 * 109.46986 * 299.99140 * 21 19 18 38 38 H 1.09002 * 109.47795 * 59.99372 * 21 19 18 39 39 H 1.08001 * 124.44642 * 315.23003 * 24 22 21 40 40 H 1.07997 * 124.45038 * 179.97438 * 25 24 22 41 41 H 1.09007 * 110.38931 * 224.75030 * 26 25 24 42 42 H 1.09008 * 110.38641 * 102.37685 * 26 25 24 43 43 H 1.08999 * 111.03823 * 266.60298 * 27 26 25 44 44 H 1.08998 * 111.03738 * 142.66267 * 27 26 25 45 45 H 1.08995 * 109.81418 * 285.70310 * 28 18 17 46 46 H 1.08997 * 109.86791 * 164.82422 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0786 -4.8023 -0.0012 12 7 0.5999 -5.3617 -1.0565 13 6 -0.2563 -6.3588 -0.8932 14 6 -0.4965 -6.6482 0.3995 15 16 0.4423 -5.5462 1.3997 16 6 -1.4169 -7.7358 0.8992 17 6 -2.3604 -8.1528 -0.2348 18 7 -1.5694 -8.3051 -1.4680 19 6 -1.4428 -9.5084 -2.0617 20 8 -1.9831 -10.4818 -1.5804 21 6 -0.6299 -9.6446 -3.3232 22 6 -0.6471 -11.1027 -3.7862 23 1 -0.3435 -11.7621 -2.9732 24 6 -2.0219 -11.4797 -4.2874 25 6 -1.9474 -12.1477 -5.4063 26 6 -0.5106 -12.3270 -5.8383 27 6 0.2817 -11.2902 -5.0085 28 6 -0.9219 -7.1136 -2.0364 29 1 -0.4849 0.8400 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.6846 -3.7146 0.8893 32 1 2.6846 -3.7146 -0.8906 33 1 -0.8270 -8.5952 1.2178 34 1 -2.0005 -7.3618 1.7404 35 1 -2.8374 -9.1003 0.0159 36 1 -3.1202 -7.3848 -0.3798 37 1 -1.0570 -9.0112 -4.1007 38 1 0.3977 -9.3377 -3.1283 39 1 -2.9449 -11.2296 -3.7855 40 1 -2.8007 -12.5229 -5.9518 41 1 -0.4058 -12.1209 -6.9035 42 1 -0.1689 -13.3367 -5.6106 43 1 0.3989 -10.3563 -5.5582 44 1 1.2501 -11.6886 -4.7062 45 1 -1.6690 -6.4788 -2.5127 46 1 -0.1713 -7.4132 -2.7677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264747271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:45 Heat of formation + Delta-G solvation = 20.708840 kcal Electronic energy + Delta-G solvation = -27135.875041 eV Core-core repulsion = 23344.846040 eV Total energy + Delta-G solvation = -3791.029001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71265 -40.62727 -39.24811 -37.54798 -36.44581 -33.98919 -33.44389 -32.15751 -31.12722 -29.77903 -28.42305 -27.53095 -26.06656 -25.38270 -24.02012 -23.20097 -21.43678 -20.79676 -19.72487 -19.54625 -19.04601 -18.92582 -17.77450 -17.34320 -16.99780 -16.79027 -16.53861 -16.15178 -15.81206 -15.65021 -15.30245 -15.01659 -14.91985 -14.76280 -14.22684 -14.03476 -13.81803 -13.59999 -13.59334 -13.07295 -12.97219 -12.90476 -12.81082 -12.76746 -12.67318 -12.41814 -12.14960 -12.08115 -12.06768 -11.97869 -11.87116 -11.69020 -11.05165 -10.86340 -10.60715 -10.22869 -9.87571 -9.77532 -9.62971 -9.10122 -7.97459 -5.29557 -0.36686 0.31777 0.74737 1.40435 1.49314 1.50444 1.55486 1.60468 1.65914 1.81488 2.55763 2.94259 3.37357 3.40495 3.65877 3.73104 3.80762 3.85703 3.87563 3.98553 4.06739 4.17208 4.26938 4.28911 4.37265 4.42634 4.51805 4.55716 4.59412 4.67609 4.72709 4.75506 4.77362 4.84564 4.86821 4.99118 5.01320 5.10016 5.14403 5.26892 5.31321 5.42689 5.47965 5.69450 6.01668 6.20978 6.25227 6.73224 7.07503 7.28763 7.94680 8.21679 9.26049 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.002117 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.432706 B =13222.265994 C =14105.289085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.246 4.246 8 H 0.085 0.915 9 N -0.736 5.736 10 C 0.227 3.773 11 C 0.038 3.962 12 N -0.479 5.479 13 C 0.027 3.973 14 C -0.225 4.225 15 S 0.159 5.841 16 C -0.050 4.050 17 C 0.114 3.886 18 N -0.613 5.613 19 C 0.521 3.479 20 O -0.567 6.567 21 C -0.132 4.132 22 C -0.052 4.052 23 H 0.072 0.928 24 C -0.164 4.164 25 C -0.174 4.174 26 C -0.101 4.101 27 C -0.119 4.119 28 C 0.198 3.802 29 H 0.252 0.748 30 H 0.373 0.627 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.130 0.870 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 -25.117 -6.281 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.222 1.222 6 H -0.220 1.220 7 C -0.378 4.378 8 H 0.103 0.897 9 N -0.380 5.380 10 C 0.098 3.902 11 C -0.240 4.240 12 N -0.194 5.194 13 C -0.106 4.106 14 C -0.347 4.347 15 S 0.417 5.583 16 C -0.090 4.090 17 C -0.010 4.010 18 N -0.346 5.346 19 C 0.312 3.688 20 O -0.446 6.446 21 C -0.171 4.171 22 C -0.071 4.071 23 H 0.090 0.910 24 C -0.182 4.182 25 C -0.192 4.192 26 C -0.138 4.138 27 C -0.157 4.157 28 C 0.073 3.927 29 H 0.061 0.939 30 H 0.205 0.795 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.148 0.852 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.118 0.882 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.255 -25.149 -5.432 25.827 hybrid contribution -0.564 0.950 -0.390 1.171 sum -2.819 -24.199 -5.821 25.049 Atomic orbital electron populations 1.69846 1.06818 1.26200 1.59067 1.25648 0.96430 1.01330 1.03191 0.84988 0.78363 0.79259 0.76584 1.18593 1.22158 1.21957 1.19688 0.91822 0.84480 1.41781 0.89672 1.42435 1.05511 1.00291 1.89760 1.19300 0.90288 0.80276 1.00361 1.26852 1.03453 1.02251 0.91453 1.65736 1.11394 1.09389 1.32900 1.21320 0.98261 0.96120 0.94881 1.26317 1.07411 1.04999 0.95966 1.83778 1.37767 1.25202 1.11513 1.20593 0.95459 0.93962 0.99010 1.21750 0.92940 1.03624 0.82644 1.48239 1.51118 1.08052 1.27230 1.21123 0.80350 0.81216 0.86127 1.90676 1.49493 1.37769 1.66667 1.21857 1.01429 0.99288 0.94548 1.20803 0.93717 0.94368 0.98197 0.91020 1.23247 0.97801 1.00365 0.96836 1.23509 0.98682 0.99616 0.97390 1.21400 0.91964 0.99717 1.00747 1.22592 0.98079 1.00140 0.94875 1.20338 0.96798 0.84794 0.90819 0.93908 0.79530 0.92585 0.93202 0.89278 0.87345 0.87681 0.89591 0.86855 0.87092 0.87493 0.85199 0.90009 0.90402 0.89752 0.89891 0.88175 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.18 13.06 21.65 0.28 -58.90 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 3 Si 0.98 45.41 29.55 68.60 2.03 47.44 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.25 -13.53 9.99 84.03 0.84 -12.69 16 8 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.74 -37.62 5.59 -347.18 -1.94 -39.57 16 10 C 0.23 9.22 6.84 85.64 0.59 9.81 16 11 C 0.04 1.37 6.75 88.57 0.60 1.96 16 12 N -0.48 -16.69 10.51 -176.95 -1.86 -18.55 16 13 C 0.03 0.76 6.87 42.16 0.29 1.05 16 14 C -0.23 -5.80 6.43 24.95 0.16 -5.64 16 15 S 0.16 4.66 23.17 -56.49 -1.31 3.35 16 16 C -0.05 -0.94 6.43 30.04 0.19 -0.74 16 17 C 0.11 2.09 6.42 86.33 0.55 2.64 16 18 N -0.61 -11.98 2.92 -819.19 -2.39 -14.38 16 19 C 0.52 10.69 7.50 87.65 0.66 11.35 16 20 O -0.57 -15.07 14.35 -3.06 -0.04 -15.11 16 21 C -0.13 -1.95 3.49 29.85 0.10 -1.84 16 22 C -0.05 -0.84 2.52 -10.85 -0.03 -0.86 16 23 H 0.07 1.39 7.90 -2.39 -0.02 1.37 16 24 C -0.16 -2.94 9.26 26.26 0.24 -2.70 16 25 C -0.17 -2.58 10.78 26.26 0.28 -2.30 16 26 C -0.10 -1.19 6.81 30.53 0.21 -0.98 16 27 C -0.12 -1.39 6.71 31.71 0.21 -1.18 16 28 C 0.20 4.00 6.65 86.05 0.57 4.57 16 29 H 0.25 14.86 8.31 -92.71 -0.77 14.08 16 30 H 0.37 20.76 7.66 -92.71 -0.71 20.05 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.10 1.93 7.02 -2.39 -0.02 1.91 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.11 1.34 8.08 -2.39 -0.02 1.32 16 38 H 0.11 1.36 7.57 -2.39 -0.02 1.34 16 39 H 0.11 2.24 7.58 -2.91 -0.02 2.21 16 40 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.08 0.83 7.91 -2.39 -0.02 0.81 16 44 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.12 2.01 6.16 -2.39 -0.01 1.99 16 Total: -1.00 -70.24 386.78 0.99 -69.24 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.29 Total: 27.74 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 5.94 Total: -1.27 kcal Atomic # 7 Polarization: -125.48 SS G_CDS: -5.91 Total: -131.39 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.04 Total: -15.11 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.31 Total: 3.35 kcal Total: -70.24 0.99 -69.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264747271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.951 kcal (2) G-P(sol) polarization free energy of solvation -70.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds