Wall clock time and date at job start Wed Apr 1 2020 04:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 120.00290 * 2 1 4 4 O 1.21346 * 120.00156 * 0.02562 * 3 2 1 5 5 C 1.49450 * 120.00037 * 180.02562 * 3 2 1 6 6 O 1.21346 * 120.00278 * 0.02562 * 5 3 2 7 7 N 1.34774 * 120.00037 * 180.02562 * 5 3 2 8 8 C 1.46805 * 126.87606 * 0.02562 * 7 5 3 9 9 C 1.50675 * 107.52757 * 179.97438 * 8 7 5 10 10 N 1.35214 * 143.67062 * 180.02562 * 9 8 7 11 11 H 0.97000 * 124.90991 * 359.97438 * 10 9 8 12 12 N 1.28491 * 110.19322 * 179.97438 * 10 9 8 13 13 C 1.31874 * 110.04911 * 0.02562 * 12 10 9 14 14 C 1.47711 * 126.58280 * 179.97438 * 13 12 10 15 15 O 1.21576 * 119.99299 * 180.02562 * 14 13 12 16 16 N 1.34775 * 120.00560 * 0.02562 * 14 13 12 17 17 C 1.47067 * 136.05504 * 359.63281 * 16 14 13 18 18 C 1.53237 * 88.08070 * 207.20216 * 17 16 14 19 19 C 1.50701 * 114.32377 * 220.46944 * 18 17 16 20 20 H 1.08004 * 119.99822 * 93.75667 * 19 18 17 21 21 C 1.37874 * 120.00219 * 273.76153 * 19 18 17 22 22 N 1.31516 * 120.00043 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00234 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47117 * 59.99822 * 23 21 19 25 25 H 1.48506 * 109.47340 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47295 * 299.99626 * 23 21 19 27 27 C 1.47057 * 136.05986 * 179.97438 * 16 14 13 28 28 C 1.34928 * 109.21068 * 0.02562 * 9 8 7 29 29 C 1.46836 * 126.87486 * 180.02562 * 7 5 3 30 30 H 1.09002 * 109.46602 * 299.99728 * 1 2 3 31 31 H 1.08999 * 109.47421 * 59.98990 * 1 2 3 32 32 H 1.08996 * 109.47408 * 179.97438 * 1 2 3 33 33 H 0.97000 * 119.99477 * 180.02562 * 2 1 3 34 34 H 1.08997 * 109.84201 * 60.48950 * 8 7 5 35 35 H 1.09005 * 109.92588 * 299.53130 * 8 7 5 36 36 H 1.09006 * 113.46376 * 321.93453 * 17 16 14 37 37 H 1.09003 * 113.46725 * 92.37040 * 17 16 14 38 38 H 1.08991 * 114.01716 * 87.71917 * 18 17 16 39 39 H 0.97000 * 120.00498 * 179.97438 * 22 21 19 40 40 H 1.09000 * 113.47305 * 267.62617 * 27 16 14 41 41 H 1.08998 * 113.47017 * 38.06821 * 27 16 14 42 42 H 1.08994 * 109.89839 * 60.54354 * 29 7 5 43 43 H 1.08996 * 109.81633 * 299.47238 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5323 2.2181 0.0005 5 6 3.6335 1.1671 -0.0006 6 8 4.2402 0.1162 -0.0015 7 7 4.3074 2.3342 -0.0001 8 6 3.7309 3.6843 0.0016 9 6 4.8741 4.6659 0.0022 10 7 5.1788 5.9832 0.0039 11 1 4.5289 6.7033 0.0050 12 7 6.4537 6.1436 0.0038 13 6 7.0569 4.9709 0.0016 14 6 8.5143 4.7307 0.0002 15 8 8.9427 3.5929 -0.0023 16 7 9.3692 5.7726 0.0018 17 6 9.2518 7.2386 -0.0017 18 6 10.6167 7.2946 -0.6960 19 6 11.5201 8.3947 -0.2012 20 1 12.2382 8.1934 0.5800 21 6 11.4299 9.6582 -0.7458 22 7 10.5558 9.9032 -1.6974 23 14 12.5501 11.0216 -0.1330 24 1 13.9667 10.6356 -0.3550 25 1 12.2568 12.2743 -0.8748 26 1 12.3177 11.2388 1.3175 27 6 10.8297 5.9439 0.0017 28 6 6.0410 3.9884 0.0005 29 6 5.7652 2.5099 -0.0010 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.9499 -0.8401 -0.0004 34 1 3.1219 3.8255 0.8944 35 1 3.1198 3.8285 -0.8895 36 1 8.4352 7.6071 -0.6226 37 1 9.2541 7.6766 0.9964 38 1 10.5644 7.2332 -1.7829 39 1 10.4920 10.7921 -2.0803 40 1 11.2564 6.0340 1.0007 41 1 11.3524 5.2138 -0.6161 42 1 6.1931 2.0547 -0.8942 43 1 6.1931 2.0524 0.8910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271442536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:25 Heat of formation + Delta-G solvation = 26.071395 kcal Electronic energy + Delta-G solvation = -29477.629042 eV Core-core repulsion = 25140.539365 eV Total energy + Delta-G solvation = -4337.089677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.24746 -41.81942 -40.99020 -39.78022 -38.73232 -38.40534 -35.77971 -34.64630 -33.38021 -32.53335 -30.92751 -29.55569 -28.68996 -27.33952 -26.83668 -26.67792 -24.58907 -23.78699 -21.97053 -21.63537 -21.21640 -19.70913 -19.21270 -18.87898 -18.73922 -18.06040 -17.97987 -17.63332 -17.01563 -16.79713 -16.55410 -16.47616 -16.14761 -16.03760 -15.78554 -14.99147 -14.97400 -14.58398 -14.32507 -14.13617 -14.02718 -13.74274 -13.71768 -13.35501 -13.24450 -13.15795 -13.08748 -12.77181 -12.74916 -12.64149 -12.33043 -12.13296 -11.58138 -11.03679 -10.93923 -10.85906 -10.75041 -10.61746 -10.51520 -10.33421 -9.66000 -9.57223 -8.14210 -6.25677 0.21096 0.33172 0.70911 0.90162 1.38318 1.50377 1.51091 1.58612 1.89135 2.00068 2.20158 2.31577 2.47897 2.84478 3.15462 3.23137 3.31209 3.36458 3.86991 4.17115 4.28947 4.31210 4.39214 4.40151 4.41802 4.44332 4.55571 4.57298 4.63064 4.64675 4.71375 4.84001 4.90629 4.96854 5.07753 5.11065 5.13978 5.60333 5.77511 5.83017 5.92436 6.08748 6.24716 6.47428 6.57777 6.75874 6.82769 6.82794 7.08665 7.43971 8.95721 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.030840 B = 0.001990 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.697709 B =14067.333347 C =14803.312235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.692 5.692 3 C 0.516 3.484 4 O -0.528 6.528 5 C 0.531 3.469 6 O -0.534 6.534 7 N -0.587 5.587 8 C 0.207 3.793 9 C -0.002 4.002 10 N -0.327 5.327 11 H 0.468 0.532 12 N -0.239 5.239 13 C 0.011 3.989 14 C 0.609 3.391 15 O -0.578 6.578 16 N -0.633 5.633 17 C 0.126 3.874 18 C 0.021 3.979 19 C -0.528 4.528 20 H 0.069 0.931 21 C 0.021 3.979 22 N -0.918 5.918 23 Si 0.960 3.040 24 H -0.271 1.271 25 H -0.288 1.288 26 H -0.268 1.268 27 C 0.109 3.891 28 C -0.199 4.199 29 C 0.192 3.808 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.422 0.578 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.264 0.736 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.006 -14.675 4.207 28.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.344 5.344 3 C 0.296 3.704 4 O -0.405 6.405 5 C 0.315 3.685 6 O -0.410 6.410 7 N -0.321 5.321 8 C 0.083 3.917 9 C -0.131 4.131 10 N -0.044 5.044 11 H 0.318 0.682 12 N -0.075 5.075 13 C -0.149 4.149 14 C 0.398 3.602 15 O -0.458 6.458 16 N -0.365 5.365 17 C 0.004 3.996 18 C 0.002 3.998 19 C -0.566 4.566 20 H 0.087 0.913 21 C -0.180 4.180 22 N -0.556 5.556 23 Si 0.785 3.215 24 H -0.196 1.196 25 H -0.213 1.213 26 H -0.193 1.193 27 C -0.013 4.013 28 C -0.211 4.211 29 C 0.069 3.931 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.259 0.741 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.950 -14.092 4.091 28.088 hybrid contribution 0.678 0.189 0.043 0.705 sum -23.272 -13.903 4.134 27.422 Atomic orbital electron populations 1.21941 0.76107 1.05261 1.02790 1.45604 1.09367 1.08103 1.71335 1.19545 0.86769 0.85453 0.78661 1.90756 1.69420 1.31342 1.48943 1.20011 0.88913 0.81714 0.77818 1.90803 1.70348 1.30383 1.49479 1.47807 1.07195 1.06192 1.70949 1.19843 0.88920 0.76126 1.06818 1.21907 0.98601 0.85976 1.06594 1.42655 1.04446 1.05980 1.51282 0.68212 1.74014 0.91268 1.23348 1.18914 1.20984 0.93329 0.89163 1.11413 1.16767 0.83650 0.83157 0.76607 1.90713 1.78408 1.22233 1.54443 1.49833 1.09329 1.08051 1.69293 1.23248 1.00482 0.75521 1.00353 1.20214 0.92930 0.91490 0.95170 1.21169 1.20003 0.94325 1.21065 0.91252 1.25783 0.96546 1.01064 0.94575 1.70070 1.36259 1.22486 1.26819 0.85579 0.79296 0.77963 0.78616 1.19565 1.21341 1.19252 1.23320 0.79212 0.97554 1.01226 1.20528 0.92349 0.96582 1.11600 1.19365 0.79840 0.90198 1.03683 0.91585 0.91641 0.86694 0.74067 0.86178 0.86327 0.92154 0.90605 0.94350 0.92693 0.89188 0.91822 0.89857 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.39 10.70 127.77 1.37 1.76 16 2 N -0.69 -6.94 5.71 -485.89 -2.77 -9.71 16 3 C 0.52 8.31 7.86 87.27 0.69 8.99 16 4 O -0.53 -9.63 14.31 -3.23 -0.05 -9.67 16 5 C 0.53 10.94 7.94 87.27 0.69 11.63 16 6 O -0.53 -13.44 16.87 -3.23 -0.05 -13.49 16 7 N -0.59 -12.40 3.35 -831.05 -2.79 -15.19 16 8 C 0.21 3.41 5.54 85.57 0.47 3.88 16 9 C 0.00 -0.04 8.20 41.27 0.34 0.30 16 10 N -0.33 -7.04 6.84 -48.10 -0.33 -7.37 16 11 H 0.47 5.81 8.96 -219.98 -1.97 3.84 16 12 N -0.24 -7.63 10.79 -48.25 -0.52 -8.15 16 13 C 0.01 0.38 7.10 42.40 0.30 0.68 16 14 C 0.61 26.19 8.08 86.75 0.70 26.89 16 15 O -0.58 -27.09 17.70 -3.96 -0.07 -27.16 16 16 N -0.63 -27.59 3.69 -862.52 -3.18 -30.77 16 17 C 0.13 5.64 7.35 83.08 0.61 6.25 16 18 C 0.02 1.04 3.77 -11.29 -0.04 1.00 16 19 C -0.53 -27.09 8.82 25.60 0.23 -26.87 16 20 H 0.07 3.41 7.81 -2.91 -0.02 3.38 16 21 C 0.02 1.08 5.46 84.65 0.46 1.54 16 22 N -0.92 -50.94 13.26 21.45 0.28 -50.66 16 23 Si 0.96 41.07 29.54 68.60 2.03 43.09 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 27 C 0.11 4.67 8.19 83.18 0.68 5.35 16 28 C -0.20 -5.89 6.91 -19.96 -0.14 -6.03 16 29 C 0.19 5.12 6.94 85.47 0.59 5.71 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.42 3.27 8.30 -92.71 -0.77 2.50 16 34 H 0.12 1.58 7.71 -2.39 -0.02 1.56 16 35 H 0.12 1.61 7.71 -2.38 -0.02 1.59 16 36 H 0.06 2.77 7.51 -2.38 -0.02 2.75 16 37 H 0.08 3.32 8.10 -2.39 -0.02 3.30 16 38 H 0.04 2.08 8.11 -2.39 -0.02 2.06 16 39 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 40 H 0.09 3.60 8.10 -2.39 -0.02 3.58 16 41 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -72.66 375.71 -2.14 -74.80 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -1.64 Total: 13.19 kcal Atomic # 6 Polarization: 34.14 SS G_CDS: 6.95 Total: 41.09 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -9.31 Total: -121.85 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -0.17 Total: -50.32 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -72.66 -2.14 -74.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271442536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.873 kcal (2) G-P(sol) polarization free energy of solvation -72.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds