Wall clock time and date at job start Wed Apr 1 2020 05:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 0.02562 * 7 2 1 9 9 N 1.37090 * 119.99992 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99714 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00111 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99627 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47177 * 179.97438 * 12 10 9 14 14 C 1.48534 * 110.99847 * 52.60010 * 13 12 10 15 15 C 1.54939 * 103.22788 * 159.72507 * 14 13 12 16 16 C 1.54597 * 102.91903 * 322.58459 * 15 14 13 17 17 O 1.42898 * 110.30854 * 263.04167 * 16 15 14 18 18 C 1.52997 * 110.39088 * 140.91581 * 16 15 14 19 19 N 1.46507 * 109.47231 * 64.23558 * 18 16 15 20 20 C 1.34774 * 120.00188 * 179.97438 * 19 18 16 21 21 O 1.21281 * 120.00102 * 359.97438 * 20 19 18 22 22 C 1.50701 * 119.99789 * 179.97438 * 20 19 18 23 23 H 1.09001 * 115.55188 * 34.33270 * 22 20 19 24 24 C 1.52999 * 117.49715 * 179.97438 * 22 20 19 25 25 C 1.52995 * 117.49910 * 248.62026 * 22 20 19 26 26 F 1.39896 * 117.49920 * 0.02562 * 25 22 20 27 27 F 1.39906 * 117.49853 * 145.02469 * 25 22 20 28 28 C 1.47900 * 111.00421 * 169.99389 * 13 12 10 29 29 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00238 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47076 * 299.99278 * 12 10 9 32 32 H 1.09002 * 109.47753 * 59.99519 * 12 10 9 33 33 H 1.09001 * 110.66846 * 278.15671 * 14 13 12 34 34 H 1.09002 * 110.66909 * 41.28864 * 14 13 12 35 35 H 1.08995 * 110.72085 * 204.22753 * 15 14 13 36 36 H 1.08999 * 110.87631 * 81.01131 * 15 14 13 37 37 H 0.96702 * 113.99697 * 295.71799 * 17 16 15 38 38 H 1.09002 * 109.47251 * 184.22834 * 18 16 15 39 39 H 1.08992 * 109.47335 * 304.23554 * 18 16 15 40 40 H 0.97003 * 119.99785 * 359.97438 * 19 18 16 41 41 H 1.08995 * 117.50258 * 214.97810 * 24 22 20 42 42 H 1.09002 * 117.49971 * 359.97438 * 24 22 20 43 43 H 1.09002 * 109.91507 * 333.51080 * 28 13 12 44 44 H 1.09007 * 109.91200 * 94.60296 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 1.4690 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5607 -2.3705 0.0000 13 7 6.0505 -3.7555 0.0006 14 6 5.4339 -4.5386 -1.1006 15 6 6.4089 -5.7297 -1.2777 16 6 7.7931 -5.0800 -1.0500 17 8 8.3977 -4.7491 -2.3018 18 6 8.7000 -6.0222 -0.2559 19 7 8.9581 -7.2305 -1.0432 20 6 9.7383 -8.2081 -0.5412 21 8 10.2272 -8.0874 0.5621 22 6 10.0032 -9.4512 -1.3509 23 1 10.0718 -9.3044 -2.4288 24 6 10.8973 -10.5240 -0.7260 25 6 9.3909 -10.7621 -0.8535 26 9 8.6275 -10.7149 0.3179 27 9 8.9615 -11.6810 -1.8171 28 6 7.5092 -3.8020 -0.2393 29 1 -0.4850 0.8401 0.0004 30 1 3.8649 -0.3633 -0.0011 31 1 5.9240 -1.8567 -0.8901 32 1 5.9242 -1.8566 0.8899 33 1 4.4433 -4.8917 -0.8138 34 1 5.3824 -3.9446 -2.0131 35 1 6.3366 -6.1407 -2.2846 36 1 6.2180 -6.5020 -0.5326 37 1 8.5994 -5.5156 -2.8559 38 1 9.6436 -5.5214 -0.0392 39 1 8.2106 -6.2954 0.6789 40 1 8.5673 -7.3269 -1.9258 41 1 11.5534 -11.0834 -1.3929 42 1 11.2943 -10.3305 0.2705 43 1 7.8202 -2.9252 -0.8072 44 1 8.0409 -3.8362 0.7117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278777260.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:51 Heat of formation + Delta-G solvation = -161.715835 kcal Electronic energy + Delta-G solvation = -30414.315075 eV Core-core repulsion = 25618.393146 eV Total energy + Delta-G solvation = -4795.921929 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.22020 -47.88873 -40.68782 -39.70303 -38.33577 -36.31882 -35.94914 -34.71445 -33.98075 -31.83130 -31.38919 -29.54923 -27.67944 -25.99629 -24.24351 -23.62694 -23.11469 -21.64644 -20.86735 -20.43990 -19.46097 -18.93957 -18.38098 -18.03138 -17.09876 -16.91072 -16.51981 -16.22645 -15.83385 -15.70274 -15.43660 -15.05123 -14.78651 -14.64180 -14.52052 -14.26848 -14.13199 -14.03042 -13.82187 -13.50158 -13.43019 -13.03328 -12.91795 -12.85986 -12.56959 -12.13162 -11.96719 -11.94068 -11.77468 -11.34367 -11.30234 -11.11189 -10.97866 -10.84677 -10.61923 -10.41427 -10.19424 -10.00492 -9.62396 -9.57845 -8.55799 -8.23890 -8.10323 -6.34285 -3.85851 1.58465 2.32565 2.50320 2.80275 3.00594 3.05302 3.13416 3.54266 3.61004 3.68693 3.75444 3.98469 4.07281 4.10407 4.18420 4.27973 4.38552 4.56442 4.78438 4.79908 4.92949 5.13481 5.18107 5.18700 5.31397 5.39925 5.43497 5.56383 5.59699 5.64475 5.77609 5.77852 5.87320 5.89233 6.12176 6.51061 6.82698 6.99319 7.07938 7.25051 7.54352 7.59960 8.10930 8.55852 8.91438 9.38516 9.78153 10.78564 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.025529 B = 0.001890 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.536043 B =14812.389724 C =15333.421640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.587 5.587 10 C 0.451 3.549 11 O -0.563 6.563 12 C 0.033 3.967 13 N -0.492 5.492 14 C 0.041 3.959 15 C -0.153 4.153 16 C 0.111 3.889 17 O -0.549 6.549 18 C 0.102 3.898 19 N -0.720 5.720 20 C 0.545 3.455 21 O -0.520 6.520 22 C -0.197 4.197 23 H 0.151 0.849 24 C -0.140 4.140 25 C 0.224 3.776 26 F -0.148 7.148 27 F -0.153 7.153 28 C 0.048 3.952 29 H 0.274 0.726 30 H 0.371 0.629 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.370 0.630 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.399 0.601 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.062 0.938 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.692 -16.224 -6.221 30.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.202 1.202 7 C -0.434 4.434 8 H 0.138 0.862 9 N -0.226 5.226 10 C 0.237 3.763 11 O -0.446 6.446 12 C -0.099 4.099 13 N -0.216 5.216 14 C -0.086 4.086 15 C -0.191 4.191 16 C 0.070 3.930 17 O -0.354 6.354 18 C -0.022 4.022 19 N -0.372 5.372 20 C 0.329 3.671 21 O -0.395 6.395 22 C -0.219 4.219 23 H 0.169 0.831 24 C -0.178 4.178 25 C 0.186 3.814 26 F -0.128 7.128 27 F -0.134 7.134 28 C -0.081 4.081 29 H 0.084 0.916 30 H 0.204 0.796 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.140 0.860 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.218 0.782 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.234 0.766 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.081 0.919 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 24.164 -16.313 -4.643 29.523 hybrid contribution 0.412 1.191 -1.569 2.013 sum 24.577 -15.122 -6.213 29.518 Atomic orbital electron populations 1.69621 1.05642 1.27556 1.49113 1.25051 0.95510 0.98026 0.97568 0.86671 0.79746 0.84005 0.78968 1.19523 1.19528 1.20156 1.19424 0.79143 0.96650 1.48173 0.86217 1.42190 1.07583 1.06112 1.66738 1.19569 0.88041 0.84584 0.84133 1.90477 1.69472 1.30527 1.54108 1.22162 0.95497 0.90321 1.01926 1.64732 1.01858 1.10944 1.44112 1.23457 1.00366 0.92822 0.91981 1.23316 0.94181 0.99389 1.02216 1.22340 0.91592 0.94928 0.84171 1.86660 1.82652 1.36515 1.29601 1.22181 1.00453 0.84178 0.95376 1.45789 1.50964 1.19214 1.21228 1.19128 0.78756 0.83111 0.86070 1.90764 1.49829 1.79219 1.19700 1.23741 1.04956 0.90037 1.03184 0.83136 1.24321 0.90607 0.96862 1.05981 1.19640 0.92023 0.90971 0.78719 1.93110 1.77399 1.96399 1.45936 1.93078 1.91421 1.66990 1.61876 1.22833 0.91045 0.95411 0.98768 0.91568 0.79636 0.92949 0.88853 0.86022 0.94055 0.90704 0.89696 0.78245 0.90170 0.89313 0.76592 0.84824 0.84494 0.91931 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.50 13.96 55.50 0.77 -24.72 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.59 -13.82 5.09 -10.96 -0.06 -13.88 16 10 C 0.45 10.04 7.49 -10.98 -0.08 9.96 16 11 O -0.56 -14.47 13.10 5.55 0.07 -14.39 16 12 C 0.03 0.54 5.52 -4.98 -0.03 0.52 16 13 N -0.49 -7.68 5.26 -231.89 -1.22 -8.90 16 14 C 0.04 0.64 5.30 -1.90 -0.01 0.63 16 15 C -0.15 -1.68 5.91 -24.87 -0.15 -1.83 16 16 C 0.11 1.10 1.06 -89.27 -0.09 1.00 16 17 O -0.55 -5.05 12.94 -35.23 -0.46 -5.50 16 18 C 0.10 0.91 4.50 -4.04 -0.02 0.90 16 19 N -0.72 -5.04 5.14 -60.29 -0.31 -5.35 16 20 C 0.54 4.71 7.25 -10.99 -0.08 4.63 16 21 O -0.52 -6.52 16.26 5.56 0.09 -6.43 16 22 C -0.20 -1.08 6.17 -91.77 -0.57 -1.64 16 23 H 0.15 0.33 8.14 -51.93 -0.42 -0.10 16 24 C -0.14 -0.67 10.02 -26.71 -0.27 -0.94 16 25 C 0.22 1.63 5.20 -26.71 -0.14 1.49 16 26 F -0.15 -1.56 17.13 2.25 0.04 -1.52 16 27 F -0.15 -1.18 17.60 2.25 0.04 -1.14 16 28 C 0.05 0.58 6.17 -2.76 -0.02 0.56 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 31 H 0.05 0.79 7.81 -51.93 -0.41 0.39 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.12 2.33 5.97 -51.93 -0.31 2.02 16 34 H 0.04 0.68 8.02 -51.93 -0.42 0.26 16 35 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.08 0.96 7.85 -51.93 -0.41 0.56 16 37 H 0.37 1.89 7.78 45.56 0.35 2.25 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.94 8.11 -51.93 -0.42 0.52 16 40 H 0.40 1.67 7.22 -40.82 -0.29 1.38 16 41 H 0.13 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.14 0.78 7.67 -51.93 -0.40 0.38 16 43 H 0.06 0.76 7.39 -51.93 -0.38 0.38 16 44 H 0.09 0.99 7.69 -51.93 -0.40 0.59 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -35.50 372.80 -6.80 -42.30 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -4.98 Total: 11.78 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -1.70 Total: 7.63 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.81 Total: -52.85 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.29 Total: -26.33 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.08 Total: -2.66 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.50 -6.80 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278777260.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.417 kcal (2) G-P(sol) polarization free energy of solvation -35.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds