Wall clock time and date at job start Wed Apr 1 2020 05:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 0.02562 * 7 2 1 9 9 N 1.37090 * 119.99992 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99714 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00111 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99627 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47177 * 179.97438 * 12 10 9 14 14 C 1.48534 * 110.99847 * 52.60010 * 13 12 10 15 15 C 1.54939 * 103.22788 * 159.72507 * 14 13 12 16 16 C 1.54597 * 102.91903 * 322.58459 * 15 14 13 17 17 O 1.42898 * 110.30854 * 263.04167 * 16 15 14 18 18 C 1.52997 * 110.39088 * 140.91581 * 16 15 14 19 19 N 1.46507 * 109.47231 * 64.23558 * 18 16 15 20 20 C 1.34774 * 120.00188 * 179.97438 * 19 18 16 21 21 O 1.21281 * 120.00102 * 359.97438 * 20 19 18 22 22 C 1.50701 * 119.99789 * 179.97438 * 20 19 18 23 23 H 1.09001 * 115.55188 * 34.33270 * 22 20 19 24 24 C 1.52999 * 117.49715 * 179.97438 * 22 20 19 25 25 C 1.52995 * 117.49910 * 248.62026 * 22 20 19 26 26 F 1.39896 * 117.49920 * 0.02562 * 25 22 20 27 27 F 1.39906 * 117.49853 * 145.02469 * 25 22 20 28 28 C 1.47900 * 111.00421 * 169.99389 * 13 12 10 29 29 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00238 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47076 * 299.99278 * 12 10 9 32 32 H 1.09002 * 109.47753 * 59.99519 * 12 10 9 33 33 H 1.09001 * 110.66846 * 278.15671 * 14 13 12 34 34 H 1.09002 * 110.66909 * 41.28864 * 14 13 12 35 35 H 1.08995 * 110.72085 * 204.22753 * 15 14 13 36 36 H 1.08999 * 110.87631 * 81.01131 * 15 14 13 37 37 H 0.96702 * 113.99697 * 295.71799 * 17 16 15 38 38 H 1.09002 * 109.47251 * 184.22834 * 18 16 15 39 39 H 1.08992 * 109.47335 * 304.23554 * 18 16 15 40 40 H 0.97003 * 119.99785 * 359.97438 * 19 18 16 41 41 H 1.08995 * 117.50258 * 214.97810 * 24 22 20 42 42 H 1.09002 * 117.49971 * 359.97438 * 24 22 20 43 43 H 1.09002 * 109.91507 * 333.51080 * 28 13 12 44 44 H 1.09007 * 109.91200 * 94.60296 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 1.4690 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5607 -2.3705 0.0000 13 7 6.0505 -3.7555 0.0006 14 6 5.4339 -4.5386 -1.1006 15 6 6.4089 -5.7297 -1.2777 16 6 7.7931 -5.0800 -1.0500 17 8 8.3977 -4.7491 -2.3018 18 6 8.7000 -6.0222 -0.2559 19 7 8.9581 -7.2305 -1.0432 20 6 9.7383 -8.2081 -0.5412 21 8 10.2272 -8.0874 0.5621 22 6 10.0032 -9.4512 -1.3509 23 1 10.0718 -9.3044 -2.4288 24 6 10.8973 -10.5240 -0.7260 25 6 9.3909 -10.7621 -0.8535 26 9 8.6275 -10.7149 0.3179 27 9 8.9615 -11.6810 -1.8171 28 6 7.5092 -3.8020 -0.2393 29 1 -0.4850 0.8401 0.0004 30 1 3.8649 -0.3633 -0.0011 31 1 5.9240 -1.8567 -0.8901 32 1 5.9242 -1.8566 0.8899 33 1 4.4433 -4.8917 -0.8138 34 1 5.3824 -3.9446 -2.0131 35 1 6.3366 -6.1407 -2.2846 36 1 6.2180 -6.5020 -0.5326 37 1 8.5994 -5.5156 -2.8559 38 1 9.6436 -5.5214 -0.0392 39 1 8.2106 -6.2954 0.6789 40 1 8.5673 -7.3269 -1.9258 41 1 11.5534 -11.0834 -1.3929 42 1 11.2943 -10.3305 0.2705 43 1 7.8202 -2.9252 -0.8072 44 1 8.0409 -3.8362 0.7117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278777260.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:51 Heat of formation + Delta-G solvation = -193.698642 kcal Electronic energy + Delta-G solvation = -30415.701953 eV Core-core repulsion = 25618.393146 eV Total energy + Delta-G solvation = -4797.308808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.80137 -48.49367 -41.50600 -40.77058 -39.80952 -37.27181 -36.62089 -35.92915 -35.42151 -33.80631 -32.54390 -30.50421 -28.92853 -27.17205 -25.67485 -24.48897 -23.59812 -22.77650 -21.59657 -21.33835 -21.25271 -20.24025 -19.52319 -18.64732 -18.01502 -17.63222 -17.52496 -17.14421 -16.95230 -16.82223 -16.47550 -16.36272 -15.93015 -15.82838 -15.26383 -15.14522 -14.96166 -14.89191 -14.72829 -14.64204 -14.60557 -14.54260 -14.17400 -13.78207 -13.66601 -13.32559 -13.18286 -13.07045 -12.75009 -12.45538 -12.41257 -12.35724 -12.29555 -11.99441 -11.90643 -11.51657 -11.43348 -11.09100 -10.99363 -10.32062 -10.28059 -10.22450 -9.41960 -8.42667 -6.03470 0.98724 1.29220 1.34581 1.43282 1.77501 1.91478 2.01137 2.21661 2.28355 2.55539 3.07382 3.12721 3.12942 3.19129 3.27803 3.41116 3.48018 3.56549 3.71874 3.81650 4.09911 4.23747 4.29519 4.35571 4.43824 4.47651 4.59741 4.61414 4.64709 4.69584 4.77827 4.80255 4.94783 5.02888 5.17415 5.20936 5.51273 5.79701 5.87234 6.00747 6.27380 6.57230 6.69222 6.86524 7.00231 7.36857 7.93464 8.74691 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.025529 B = 0.001890 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.536043 B =14812.389724 C =15333.421640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.232 1.232 6 H -0.275 1.275 7 C -0.327 4.327 8 H 0.057 0.943 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.604 6.604 12 C 0.043 3.957 13 N -0.511 5.511 14 C 0.038 3.962 15 C -0.142 4.142 16 C 0.130 3.870 17 O -0.555 6.555 18 C 0.111 3.889 19 N -0.707 5.707 20 C 0.539 3.461 21 O -0.564 6.564 22 C -0.182 4.182 23 H 0.192 0.808 24 C -0.122 4.122 25 C 0.196 3.804 26 F -0.175 7.175 27 F -0.157 7.157 28 C 0.045 3.955 29 H 0.279 0.721 30 H 0.389 0.611 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.390 0.610 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.416 0.584 41 H 0.169 0.831 42 H 0.125 0.875 43 H 0.070 0.930 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.823 -15.136 -7.749 33.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.214 4.214 3 Si 0.784 3.216 4 H -0.181 1.181 5 H -0.156 1.156 6 H -0.200 1.200 7 C -0.456 4.456 8 H 0.075 0.925 9 N -0.231 5.231 10 C 0.237 3.763 11 O -0.489 6.489 12 C -0.088 4.088 13 N -0.236 5.236 14 C -0.089 4.089 15 C -0.180 4.180 16 C 0.088 3.912 17 O -0.363 6.363 18 C -0.014 4.014 19 N -0.360 5.360 20 C 0.325 3.675 21 O -0.443 6.443 22 C -0.204 4.204 23 H 0.209 0.791 24 C -0.160 4.160 25 C 0.159 3.841 26 F -0.156 7.156 27 F -0.138 7.138 28 C -0.083 4.083 29 H 0.089 0.911 30 H 0.225 0.775 31 H 0.096 0.904 32 H 0.141 0.859 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.241 0.759 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.253 0.747 41 H 0.187 0.813 42 H 0.143 0.857 43 H 0.088 0.912 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 28.318 -15.253 -6.216 32.760 hybrid contribution -0.931 0.698 -1.105 1.605 sum 27.387 -14.556 -7.321 31.867 Atomic orbital electron populations 1.69802 1.08091 1.29250 1.50210 1.26116 0.96487 1.02718 0.96101 0.85374 0.79442 0.76807 0.79963 1.18140 1.15573 1.19982 1.18989 0.81347 0.94950 1.50305 0.92520 1.42021 1.05893 1.07508 1.67695 1.20774 0.90680 0.83459 0.81382 1.90492 1.71303 1.32134 1.54935 1.22119 0.90431 0.91801 1.04463 1.64691 1.04208 1.10268 1.44454 1.23249 0.99623 0.94623 0.91420 1.23249 0.93698 0.97453 1.03646 1.21979 0.90849 0.93822 0.84565 1.86629 1.82335 1.37997 1.29314 1.21950 1.00017 0.84643 0.94753 1.45668 1.50332 1.18340 1.21679 1.19675 0.78101 0.83988 0.85747 1.90749 1.51606 1.80230 1.21696 1.23849 1.03996 0.87704 1.04801 0.79091 1.24480 0.89262 0.96046 1.06215 1.20052 0.93361 0.92408 0.78294 1.93047 1.78306 1.96613 1.47624 1.93063 1.91628 1.67250 1.61832 1.22925 0.88396 0.96762 1.00199 0.91130 0.77522 0.90383 0.85937 0.90559 0.95034 0.88111 0.90238 0.75933 0.89972 0.91119 0.74675 0.81293 0.85668 0.91215 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.24 13.96 21.66 0.30 -55.94 16 2 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 3 Si 0.96 38.80 27.74 68.60 1.90 40.70 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.23 -7.88 6.52 99.48 0.65 -7.23 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.33 -19.11 10.16 84.04 0.85 -18.26 16 8 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 9 N -0.59 -27.84 5.09 -306.98 -1.56 -29.40 16 10 C 0.45 20.27 7.49 87.65 0.66 20.93 16 11 O -0.60 -32.81 13.10 -3.07 -0.04 -32.85 16 12 C 0.04 1.35 5.52 85.56 0.47 1.83 16 13 N -0.51 -15.39 5.26 -887.55 -4.67 -20.06 16 14 C 0.04 1.21 5.30 86.65 0.46 1.67 16 15 C -0.14 -2.94 5.91 31.80 0.19 -2.75 16 16 C 0.13 2.22 1.06 -9.92 -0.01 2.21 16 17 O -0.55 -8.09 12.94 -148.98 -1.93 -10.02 16 18 C 0.11 1.76 4.50 86.38 0.39 2.15 16 19 N -0.71 -8.13 5.14 -463.06 -2.38 -10.51 16 20 C 0.54 8.30 7.25 87.66 0.64 8.94 16 21 O -0.56 -13.75 16.26 -3.03 -0.05 -13.80 16 22 C -0.18 -1.48 6.17 -11.54 -0.07 -1.55 16 23 H 0.19 -0.08 8.14 -2.39 -0.02 -0.10 16 24 C -0.12 -0.89 10.02 30.61 0.31 -0.58 16 25 C 0.20 2.59 5.20 30.61 0.16 2.75 16 26 F -0.18 -3.74 17.13 44.97 0.77 -2.97 16 27 F -0.16 -2.18 17.60 44.97 0.79 -1.39 16 28 C 0.05 0.96 6.17 86.44 0.53 1.50 16 29 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 30 H 0.39 15.25 5.76 -92.71 -0.53 14.72 16 31 H 0.08 2.09 7.81 -2.38 -0.02 2.08 16 32 H 0.12 3.17 8.14 -2.39 -0.02 3.16 16 33 H 0.08 3.12 5.97 -2.39 -0.01 3.10 16 34 H 0.03 1.03 8.02 -2.39 -0.02 1.01 16 35 H 0.10 1.54 8.08 -2.39 -0.02 1.52 16 36 H 0.08 1.75 7.85 -2.39 -0.02 1.73 16 37 H 0.39 2.26 7.78 -74.06 -0.58 1.69 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.43 8.11 -2.39 -0.02 1.41 16 40 H 0.42 2.01 7.22 -92.71 -0.67 1.34 16 41 H 0.17 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.13 1.28 7.67 -2.39 -0.02 1.26 16 43 H 0.07 1.43 7.39 -2.39 -0.02 1.41 16 44 H 0.11 1.98 7.69 -2.38 -0.02 1.96 16 Total: -1.00 -85.74 372.80 -2.58 -88.32 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: -0.75 Total: 29.48 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 5.04 Total: 18.44 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -8.31 Total: -115.91 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -2.02 Total: -56.66 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 1.56 Total: -4.36 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 1.90 Total: 40.70 kcal Total: -85.74 -2.58 -88.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278777260.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.383 kcal (2) G-P(sol) polarization free energy of solvation -85.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds