Wall clock time and date at job start Wed Apr 1 2020 04:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00398 * 2 1 4 4 C 1.52996 * 109.47117 * 269.99885 * 3 2 1 5 5 H 1.09004 * 109.46908 * 59.99977 * 4 3 2 6 6 O 1.42898 * 109.47192 * 299.99990 * 4 3 2 7 7 C 1.52995 * 109.47294 * 179.97438 * 4 3 2 8 8 N 1.46499 * 109.47234 * 185.00017 * 7 4 3 9 9 C 1.36940 * 119.99896 * 180.02562 * 8 7 4 10 10 H 1.08000 * 119.99945 * 0.02562 * 9 8 7 11 11 C 1.38811 * 119.99837 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99665 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00087 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47308 * 89.99993 * 13 11 9 15 15 H 1.48508 * 109.47087 * 210.00200 * 13 11 9 16 16 H 1.48507 * 109.47117 * 329.99463 * 13 11 9 17 17 C 1.34775 * 119.99552 * 179.97438 * 2 1 3 18 18 O 1.21569 * 119.99895 * 184.38039 * 17 2 1 19 19 C 1.47763 * 120.00321 * 4.39158 * 17 2 1 20 20 C 1.40596 * 120.26699 * 327.82421 * 19 17 2 21 21 N 1.30793 * 121.54313 * 179.97438 * 20 19 17 22 22 C 1.33831 * 121.72389 * 359.72449 * 21 20 19 23 23 C 1.40550 * 120.78576 * 179.74729 * 22 21 20 24 24 C 1.36088 * 119.84211 * 180.29497 * 23 22 21 25 25 C 1.39561 * 121.06648 * 0.25294 * 24 23 22 26 26 F 1.35098 * 119.61498 * 180.02562 * 25 24 23 27 27 C 1.36349 * 120.77673 * 359.97438 * 25 24 23 28 28 C 1.40514 * 119.60506 * 0.02562 * 27 25 24 29 29 C 1.39010 * 120.27113 * 147.80482 * 19 17 2 30 30 H 1.09002 * 109.47245 * 274.77418 * 1 2 3 31 31 H 1.09000 * 109.47061 * 34.76882 * 1 2 3 32 32 H 1.09001 * 109.47232 * 154.76965 * 1 2 3 33 33 H 1.09004 * 109.46471 * 30.00079 * 3 2 1 34 34 H 1.08996 * 109.47157 * 149.99819 * 3 2 1 35 35 H 0.96698 * 113.99916 * 299.99547 * 6 4 3 36 36 H 1.09000 * 109.47159 * 305.00451 * 7 4 3 37 37 H 1.09008 * 109.46673 * 64.99996 * 7 4 3 38 38 H 0.96993 * 120.00083 * 0.02562 * 8 7 4 39 39 H 0.97006 * 119.99252 * 180.02562 * 12 11 9 40 40 H 1.08004 * 119.23488 * 0.02562 * 20 19 17 41 41 H 1.07998 * 120.07765 * 0.57262 * 23 22 21 42 42 H 1.08005 * 119.47049 * 180.27706 * 24 23 22 43 43 H 1.08002 * 120.19530 * 179.97438 * 27 25 24 44 44 H 1.07994 * 121.01585 * 359.97438 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5002 1.8407 -1.9563 6 8 3.2248 0.7144 -2.1161 7 6 3.2171 3.0355 -1.4425 8 7 3.3570 3.5186 -2.8185 9 6 4.0114 4.6954 -3.0678 10 1 4.4247 5.2672 -2.2501 11 6 4.1435 5.1533 -4.3715 12 7 4.7729 6.2842 -4.6112 13 14 3.4281 4.1647 -5.7857 14 1 2.0312 4.6006 -6.0377 15 1 4.2437 4.3860 -7.0069 16 1 3.4410 2.7212 -5.4370 17 6 2.1388 -1.1672 0.0005 18 8 3.3518 -1.1688 0.0809 19 6 1.4032 -2.4450 -0.0969 20 6 0.1187 -2.5677 0.4616 21 7 -0.5548 -3.6865 0.3894 22 6 -0.0589 -4.7682 -0.2232 23 6 -0.7977 -5.9623 -0.2845 24 6 -0.2724 -7.0524 -0.9070 25 6 0.9969 -7.0094 -1.4856 26 9 1.4896 -8.1088 -2.0968 27 6 1.7452 -5.8704 -1.4422 28 6 1.2324 -4.7267 -0.8069 29 6 1.9753 -3.5356 -0.7418 30 1 -0.3634 0.0855 1.0241 31 1 -0.3633 0.8442 -0.5860 32 1 -0.3634 -0.9296 -0.4381 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1383 0.5138 35 1 4.0873 0.5459 -1.7126 36 1 2.6695 3.7710 -0.8532 37 1 4.2054 2.8848 -1.0080 38 1 2.9862 3.0048 -3.5529 39 1 4.8649 6.6043 -5.5222 40 1 -0.3226 -1.7179 0.9611 41 1 -1.7818 -6.0132 0.1575 42 1 -0.8472 -7.9656 -0.9546 43 1 2.7265 -5.8477 -1.8926 44 1 2.9600 -3.4690 -1.1802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284457153.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:29 Heat of formation + Delta-G solvation = -33.715691 kcal Electronic energy + Delta-G solvation = -29397.224013 eV Core-core repulsion = 25037.621812 eV Total energy + Delta-G solvation = -4359.602202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.43053 -41.57164 -40.03451 -37.65995 -37.15765 -35.59837 -34.18293 -34.01705 -31.78809 -31.29842 -30.41158 -29.61851 -27.45986 -26.29481 -24.77581 -24.18671 -22.88327 -22.41617 -21.31913 -20.38494 -19.21856 -18.29788 -17.72605 -17.64029 -17.28317 -16.71230 -16.18843 -16.09409 -15.65809 -15.59853 -15.17477 -15.01087 -14.59331 -14.52124 -14.37059 -14.14008 -13.79522 -13.66318 -13.55794 -13.34611 -13.30611 -13.18446 -12.50973 -12.41167 -12.27293 -11.94214 -11.74983 -11.60599 -11.26492 -11.10770 -10.91496 -10.85293 -10.52032 -10.20166 -9.98222 -9.77830 -9.58619 -9.28512 -8.92431 -8.84266 -8.71116 -7.24605 -5.77442 -3.13105 -0.34738 -0.00031 1.28028 1.96633 2.51398 2.80369 3.39548 3.46949 3.47298 3.47402 3.58104 3.66234 3.92149 4.00612 4.22482 4.27912 4.31523 4.50274 4.60447 4.64124 4.70579 4.79728 4.85751 5.00976 5.05645 5.11342 5.22010 5.29674 5.33220 5.44547 5.47363 5.50228 5.53325 5.56298 5.58479 5.77659 5.86488 5.88994 6.15615 6.19800 6.41138 6.59041 7.04052 7.27095 7.86197 7.94401 8.01944 8.41405 9.21032 9.93375 10.13275 11.40655 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015941 B = 0.002193 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.085631 B =12762.694692 C =13698.130431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.601 5.601 3 C 0.085 3.915 4 C 0.081 3.919 5 H 0.096 0.904 6 O -0.553 6.553 7 C 0.131 3.869 8 N -0.749 5.749 9 C -0.246 4.246 10 H 0.089 0.911 11 C 0.005 3.995 12 N -0.934 5.934 13 Si 0.883 3.117 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.273 1.273 17 C 0.570 3.430 18 O -0.525 6.525 19 C -0.178 4.178 20 C 0.144 3.856 21 N -0.471 5.471 22 C 0.129 3.871 23 C -0.064 4.064 24 C -0.125 4.125 25 C 0.101 3.899 26 F -0.135 7.135 27 C -0.124 4.124 28 C -0.088 4.088 29 C 0.010 3.990 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.377 0.623 36 H 0.035 0.965 37 H 0.030 0.970 38 H 0.365 0.635 39 H 0.260 0.740 40 H 0.181 0.819 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.140 -26.904 13.048 33.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.333 5.333 3 C -0.038 4.038 4 C 0.020 3.980 5 H 0.114 0.886 6 O -0.358 6.358 7 C 0.002 3.998 8 N -0.395 5.395 9 C -0.376 4.376 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.581 5.581 13 Si 0.714 3.286 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.199 1.199 17 C 0.357 3.643 18 O -0.401 6.401 19 C -0.183 4.183 20 C -0.028 4.028 21 N -0.178 5.178 22 C 0.007 3.993 23 C -0.082 4.082 24 C -0.146 4.146 25 C 0.082 3.918 26 F -0.113 7.113 27 C -0.144 4.144 28 C -0.090 4.090 29 C -0.017 4.017 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.225 0.775 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.199 0.801 39 H 0.070 0.930 40 H 0.197 0.803 41 H 0.167 0.833 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.726 -26.900 13.070 33.336 hybrid contribution 0.850 -0.542 -1.270 1.622 sum -13.875 -27.442 11.800 32.937 Atomic orbital electron populations 1.22472 0.79742 1.04360 1.02035 1.47525 1.06850 1.05875 1.73039 1.22310 0.98677 0.84206 0.98647 1.22559 0.95714 0.88412 0.91267 0.88604 1.86515 1.33309 1.59042 1.56976 1.21209 0.97454 0.92369 0.88761 1.42584 1.69320 1.25702 1.01925 1.19046 1.28218 0.96373 0.93981 0.89279 1.24669 1.00347 0.97076 0.96989 1.69711 1.47069 1.21541 1.19822 0.86544 0.78785 0.80340 0.82978 1.21142 1.21733 1.19868 1.17873 0.86924 0.82953 0.76514 1.90784 1.13214 1.86931 1.49202 1.20965 0.97158 0.95865 1.04296 1.23840 0.89565 0.95560 0.93873 1.68030 1.35119 0.98844 1.15825 1.19041 0.91285 0.93619 0.95311 1.20718 1.00218 0.89752 0.97557 1.20996 0.94416 1.00534 0.98630 1.17364 0.93559 0.83621 0.97252 1.91543 1.87619 1.51560 1.80587 1.21016 1.01268 0.91195 1.00879 1.18488 0.95363 0.94524 1.00663 1.21894 0.98913 0.89350 0.91526 0.91464 0.90248 0.89801 0.88988 0.88849 0.77542 0.94769 0.95182 0.80145 0.93046 0.80293 0.83266 0.83656 0.83447 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 8.81 59.85 0.53 0.90 16 2 N -0.60 -6.13 2.83 -182.73 -0.52 -6.65 16 3 C 0.08 0.94 5.19 -4.04 -0.02 0.92 16 4 C 0.08 1.20 3.27 -26.74 -0.09 1.11 16 5 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 6 O -0.55 -9.28 12.19 -37.83 -0.46 -9.74 16 7 C 0.13 2.40 5.90 -4.04 -0.02 2.38 16 8 N -0.75 -17.99 5.35 -59.91 -0.32 -18.31 16 9 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 10 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 11 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 12 N -0.93 -29.62 13.97 55.49 0.78 -28.84 16 13 Si 0.88 22.64 27.74 -169.99 -4.71 17.93 16 14 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 16 H -0.27 -6.77 6.52 56.52 0.37 -6.40 16 17 C 0.57 6.83 6.88 -12.37 -0.09 6.75 16 18 O -0.52 -7.86 15.44 2.70 0.04 -7.81 16 19 C -0.18 -1.80 5.47 -104.83 -0.57 -2.38 16 20 C 0.14 1.23 8.58 -17.11 -0.15 1.08 16 21 N -0.47 -4.40 10.30 -10.67 -0.11 -4.51 16 22 C 0.13 1.17 6.61 -84.77 -0.56 0.61 16 23 C -0.06 -0.44 9.97 -39.48 -0.39 -0.83 16 24 C -0.13 -0.77 9.92 -39.86 -0.40 -1.16 16 25 C 0.10 0.77 7.24 -39.77 -0.29 0.49 16 26 F -0.13 -1.12 17.25 2.25 0.04 -1.08 16 27 C -0.12 -0.98 9.73 -39.40 -0.38 -1.36 16 28 C -0.09 -0.81 5.74 -106.82 -0.61 -1.42 16 29 C 0.01 0.09 9.48 -38.43 -0.36 -0.27 16 30 H 0.07 0.28 7.45 -51.93 -0.39 -0.10 16 31 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 32 H 0.08 0.54 4.70 -51.93 -0.24 0.30 16 33 H 0.09 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.09 1.12 7.36 -51.93 -0.38 0.74 16 35 H 0.38 5.89 8.59 45.56 0.39 6.29 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.03 0.57 8.14 -51.92 -0.42 0.14 16 38 H 0.37 8.84 5.53 -40.82 -0.23 8.61 16 39 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 40 H 0.18 1.05 4.80 -52.48 -0.25 0.80 16 41 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 43 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.16 1.43 7.99 -52.49 -0.42 1.01 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -36.13 372.13 -7.81 -43.94 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -4.49 Total: 9.82 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -3.66 Total: -0.34 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.17 Total: -58.31 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.42 Total: -17.55 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.71 Total: 17.93 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.13 -7.81 -43.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284457153.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.225 kcal (2) G-P(sol) polarization free energy of solvation -36.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds