Wall clock time and date at job start Wed Apr 1 2020 04:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99707 * 2 1 4 4 H 1.48495 * 109.47221 * 240.00118 * 3 2 1 5 5 H 1.48501 * 109.47150 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47075 * 120.00171 * 3 2 1 7 7 C 1.37870 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99608 * 185.19411 * 7 2 1 9 9 C 1.50694 * 120.00301 * 5.18807 * 7 2 1 10 10 H 1.08998 * 109.47398 * 24.88394 * 9 7 2 11 11 C 1.50710 * 109.47192 * 144.88463 * 9 7 2 12 12 O 1.21272 * 119.99891 * 119.99854 * 11 9 7 13 13 N 1.34777 * 119.99522 * 299.99797 * 11 9 7 14 14 N 1.40095 * 119.99536 * 179.97438 * 13 11 9 15 15 C 1.34782 * 119.99776 * 180.02562 * 14 13 11 16 16 S 1.71201 * 119.99921 * 180.02562 * 15 14 13 17 17 N 1.34771 * 119.99996 * 0.02562 * 15 14 13 18 18 C 1.46503 * 120.00042 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47244 * 179.97438 * 18 17 15 20 20 C 1.53781 * 113.61560 * 85.86150 * 19 18 17 21 21 C 1.54048 * 86.98715 * 140.01901 * 20 19 18 22 22 C 1.53780 * 87.08045 * 334.57155 * 21 20 19 23 23 C 1.50706 * 109.47264 * 264.88138 * 9 7 2 24 24 C 1.38228 * 119.99843 * 306.01265 * 23 9 7 25 25 C 1.38244 * 119.99674 * 179.78615 * 24 23 9 26 26 C 1.38234 * 119.99969 * 0.44127 * 25 24 23 27 27 C 1.38237 * 119.99972 * 359.81290 * 26 25 24 28 28 C 1.38234 * 119.99891 * 359.97438 * 27 26 25 29 29 H 0.96994 * 119.99967 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00429 * 0.02562 * 13 11 9 31 31 H 0.97002 * 120.00452 * 0.02562 * 14 13 11 32 32 H 0.97000 * 120.00463 * 359.97438 * 17 15 14 33 33 H 1.09000 * 109.47103 * 60.00191 * 18 17 15 34 34 H 1.08998 * 109.47197 * 299.99963 * 18 17 15 35 35 H 1.09005 * 112.85054 * 314.66753 * 19 18 17 36 36 H 1.08997 * 113.61964 * 254.61322 * 20 19 18 37 37 H 1.09005 * 113.60877 * 25.52036 * 20 19 18 38 38 H 1.09001 * 113.62624 * 220.02430 * 21 20 19 39 39 H 1.09004 * 113.61316 * 89.11841 * 21 20 19 40 40 H 1.08994 * 113.61806 * 270.88267 * 22 21 20 41 41 H 1.09002 * 113.69561 * 139.97781 * 22 21 20 42 42 H 1.08003 * 120.00739 * 359.97438 * 24 23 9 43 43 H 1.08003 * 119.99617 * 180.27608 * 25 24 23 44 44 H 1.07997 * 119.99864 * 179.83497 * 26 25 24 45 45 H 1.07995 * 119.99899 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.00079 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0841 9 6 1.2557 -2.4964 -0.1191 10 1 0.3034 -2.3236 -0.6203 11 6 2.0747 -3.4755 -0.9203 12 8 2.4204 -4.5263 -0.4233 13 7 2.4227 -3.1833 -2.1892 14 7 3.1843 -4.0933 -2.9338 15 6 3.5328 -3.8009 -4.2025 16 16 4.4631 -4.9132 -5.1127 17 7 3.1490 -2.6329 -4.7546 18 6 3.5273 -2.3153 -6.1339 19 6 2.9690 -0.9421 -6.5125 20 6 3.8828 0.2270 -6.1090 21 6 3.5161 0.8730 -7.4585 22 6 3.2392 -0.5489 -7.9745 23 6 1.0049 -3.0587 1.2564 24 6 2.0596 -3.2434 2.1305 25 6 1.8289 -3.7551 3.3938 26 6 0.5445 -4.0905 3.7797 27 6 -0.5096 -3.9106 2.9037 28 6 -0.2794 -3.3948 1.6420 29 1 -0.4850 0.8400 0.0004 30 1 2.1464 -2.3427 -2.5866 31 1 3.4610 -4.9338 -2.5363 32 1 2.6216 -2.0028 -4.2391 33 1 3.1194 -3.0707 -6.8056 34 1 4.6139 -2.3022 -6.2188 35 1 1.9304 -0.8092 -6.2095 36 1 3.5227 0.7845 -5.2443 37 1 4.9344 -0.0485 -6.0283 38 1 4.3567 1.3607 -7.9522 39 1 2.6270 1.5022 -7.4142 40 1 4.1150 -1.0363 -8.4028 41 1 2.3601 -0.6191 -8.6151 42 1 3.0637 -2.9853 1.8276 43 1 2.6524 -3.8953 4.0783 44 1 0.3646 -4.4927 4.7657 45 1 -1.5129 -4.1730 3.2050 46 1 -1.1028 -3.2546 0.9574 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001300089790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:09 Heat of formation + Delta-G solvation = 49.794982 kcal Electronic energy + Delta-G solvation = -27783.667628 eV Core-core repulsion = 23993.899897 eV Total energy + Delta-G solvation = -3789.767731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.23185 -39.41049 -38.49405 -37.52679 -35.04733 -34.00990 -31.78607 -31.18935 -30.10280 -28.52761 -27.48998 -25.88065 -24.44111 -23.39587 -23.15393 -21.78945 -21.44442 -20.36295 -19.78546 -18.76983 -18.05606 -16.99687 -16.28040 -16.13773 -15.85960 -15.75206 -15.32124 -14.96234 -14.73791 -14.48695 -14.45725 -14.24292 -13.98479 -13.34286 -13.13632 -12.70594 -12.63325 -12.53198 -12.28520 -12.05766 -11.87292 -11.83774 -11.32220 -11.22125 -11.21168 -10.88990 -10.71759 -10.65687 -10.62958 -10.48045 -10.27231 -10.26490 -9.73814 -9.30993 -8.97931 -8.59085 -8.10863 -7.83852 -7.61827 -7.56319 -6.55005 -4.65017 1.40604 1.52351 2.19064 2.22526 2.41173 2.72919 3.00862 3.06632 3.09375 3.20026 4.03453 4.28393 4.32219 4.39989 4.52309 4.58729 4.68090 4.83152 4.93169 5.20069 5.44690 5.47522 5.48776 5.50729 5.59199 5.64713 5.65435 5.69058 5.75891 5.77964 5.91439 5.98568 6.07707 6.21287 6.31017 6.35732 6.38333 6.58323 6.72048 6.85684 6.91504 7.21210 7.23607 7.32774 7.35965 7.48434 7.56028 7.69777 7.86208 8.38606 8.63351 9.03056 10.52364 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010003 B = 0.003431 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.396888 B = 8158.185395 C =10265.379132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.078 3.922 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.066 0.934 9 C 0.066 3.934 10 H 0.096 0.904 11 C 0.533 3.467 12 O -0.546 6.546 13 N -0.547 5.547 14 N -0.465 5.465 15 C 0.567 3.433 16 S -0.642 6.642 17 N -0.684 5.684 18 C 0.136 3.864 19 C -0.131 4.131 20 C -0.141 4.141 21 C -0.142 4.142 22 C -0.126 4.126 23 C -0.016 4.016 24 C -0.085 4.085 25 C -0.133 4.133 26 C -0.144 4.144 27 C -0.131 4.131 28 C -0.114 4.114 29 H 0.271 0.729 30 H 0.425 0.575 31 H 0.455 0.545 32 H 0.398 0.602 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 2.373 -8.495 8.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.129 4.129 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.084 0.916 9 C 0.044 3.956 10 H 0.114 0.886 11 C 0.323 3.677 12 O -0.420 6.420 13 N -0.299 5.299 14 N -0.191 5.191 15 C 0.203 3.797 16 S -0.518 6.518 17 N -0.316 5.316 18 C 0.013 3.987 19 C -0.150 4.150 20 C -0.178 4.178 21 C -0.180 4.180 22 C -0.164 4.164 23 C -0.018 4.018 24 C -0.103 4.103 25 C -0.151 4.151 26 C -0.162 4.162 27 C -0.149 4.149 28 C -0.132 4.132 29 H 0.081 0.919 30 H 0.267 0.733 31 H 0.304 0.696 32 H 0.235 0.765 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.413 1.211 -8.717 8.913 hybrid contribution -0.370 1.962 0.930 2.202 sum 1.043 3.172 -7.787 8.473 Atomic orbital electron populations 1.69891 1.06013 1.28063 1.46547 1.24975 0.94936 0.99572 0.93400 0.86509 0.79623 0.82004 0.79239 1.19826 1.20860 1.19728 1.20663 0.93403 0.88086 1.54529 0.91612 1.18078 0.97361 0.91417 0.88790 0.88583 1.22527 0.78997 0.87897 0.78261 1.90664 1.55783 1.26340 1.69206 1.45951 1.53618 1.17821 1.12517 1.44746 1.48333 1.18516 1.07484 1.22268 0.85669 0.88245 0.83492 1.93511 1.50391 1.47012 1.60891 1.44981 1.53727 1.16567 1.16348 1.21796 1.01595 0.96047 0.79261 1.22916 1.00504 0.93379 0.98213 1.23100 0.99967 0.96829 0.97937 1.22848 1.01769 0.96372 0.96978 1.22838 1.02305 0.96501 0.94762 1.19856 0.92463 0.92843 0.96595 1.20829 0.98953 0.97540 0.92985 1.20973 0.96410 1.01124 0.96607 1.20849 0.93290 1.02986 0.99055 1.20921 0.98089 1.01326 0.94563 1.20971 0.96753 0.99191 0.96331 0.91881 0.73263 0.69574 0.76454 0.89395 0.89333 0.88426 0.91056 0.89648 0.91278 0.90096 0.89480 0.91074 0.87060 0.87394 0.87503 0.87340 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -20.54 12.84 55.43 0.71 -19.83 16 2 C 0.08 1.75 5.45 -17.82 -0.10 1.65 16 3 Si 0.90 17.94 29.54 -169.99 -5.02 12.92 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 7 C -0.53 -11.65 7.47 -34.45 -0.26 -11.91 16 8 H 0.07 1.48 7.82 -52.48 -0.41 1.07 16 9 C 0.07 1.38 2.38 -94.07 -0.22 1.16 16 10 H 0.10 2.08 7.13 -51.93 -0.37 1.71 16 11 C 0.53 10.31 7.16 -10.98 -0.08 10.23 16 12 O -0.55 -11.75 15.25 5.56 0.08 -11.66 16 13 N -0.55 -8.68 6.16 31.22 0.19 -8.49 16 14 N -0.47 -7.10 6.26 29.96 0.19 -6.91 16 15 C 0.57 8.28 7.97 -86.92 -0.69 7.58 16 16 S -0.64 -11.28 29.32 -107.50 -3.15 -14.43 16 17 N -0.68 -7.88 5.52 -62.03 -0.34 -8.23 16 18 C 0.14 1.36 4.95 -4.04 -0.02 1.34 16 19 C -0.13 -1.06 3.75 -89.81 -0.34 -1.39 16 20 C -0.14 -1.18 7.65 -25.78 -0.20 -1.38 16 21 C -0.14 -1.03 8.09 -25.78 -0.21 -1.24 16 22 C -0.13 -0.88 7.64 -25.92 -0.20 -1.08 16 23 C -0.02 -0.35 4.30 -104.62 -0.45 -0.80 16 24 C -0.08 -1.76 8.30 -39.58 -0.33 -2.09 16 25 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 26 C -0.14 -2.48 10.05 -39.58 -0.40 -2.88 16 27 C -0.13 -2.34 10.05 -39.58 -0.40 -2.73 16 28 C -0.11 -2.28 9.67 -39.58 -0.38 -2.66 16 29 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 30 H 0.42 6.00 6.59 -182.60 -1.20 4.80 16 31 H 0.45 7.34 7.98 -182.60 -1.46 5.88 16 32 H 0.40 4.15 6.39 -40.82 -0.26 3.89 16 33 H 0.09 0.93 7.99 -51.93 -0.42 0.52 16 34 H 0.09 0.96 7.73 -51.93 -0.40 0.56 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.11 2.32 7.90 -52.48 -0.41 1.91 16 43 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 44 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 45 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 46 H 0.11 2.15 7.96 -52.49 -0.42 1.74 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -27.57 397.83 -14.71 -42.27 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -8.70 Total: 17.39 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -4.66 Total: -9.04 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.75 Total: -43.45 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.92 kcal Atomic # 16 Polarization: -11.28 SS G_CDS: -3.15 Total: -14.43 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -27.57 -14.71 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001300089790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.069 kcal (2) G-P(sol) polarization free energy of solvation -27.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds