Wall clock time and date at job start Wed Apr 1 2020 04:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99707 * 2 1 4 4 H 1.48495 * 109.47221 * 240.00118 * 3 2 1 5 5 H 1.48501 * 109.47150 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47075 * 120.00171 * 3 2 1 7 7 C 1.37870 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99608 * 185.19411 * 7 2 1 9 9 C 1.50694 * 120.00301 * 5.18807 * 7 2 1 10 10 H 1.08998 * 109.47398 * 24.88394 * 9 7 2 11 11 C 1.50710 * 109.47192 * 144.88463 * 9 7 2 12 12 O 1.21272 * 119.99891 * 119.99854 * 11 9 7 13 13 N 1.34777 * 119.99522 * 299.99797 * 11 9 7 14 14 N 1.40095 * 119.99536 * 179.97438 * 13 11 9 15 15 C 1.34782 * 119.99776 * 180.02562 * 14 13 11 16 16 S 1.71201 * 119.99921 * 180.02562 * 15 14 13 17 17 N 1.34771 * 119.99996 * 0.02562 * 15 14 13 18 18 C 1.46503 * 120.00042 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47244 * 179.97438 * 18 17 15 20 20 C 1.53781 * 113.61560 * 85.86150 * 19 18 17 21 21 C 1.54048 * 86.98715 * 140.01901 * 20 19 18 22 22 C 1.53780 * 87.08045 * 334.57155 * 21 20 19 23 23 C 1.50706 * 109.47264 * 264.88138 * 9 7 2 24 24 C 1.38228 * 119.99843 * 306.01265 * 23 9 7 25 25 C 1.38244 * 119.99674 * 179.78615 * 24 23 9 26 26 C 1.38234 * 119.99969 * 0.44127 * 25 24 23 27 27 C 1.38237 * 119.99972 * 359.81290 * 26 25 24 28 28 C 1.38234 * 119.99891 * 359.97438 * 27 26 25 29 29 H 0.96994 * 119.99967 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00429 * 0.02562 * 13 11 9 31 31 H 0.97002 * 120.00452 * 0.02562 * 14 13 11 32 32 H 0.97000 * 120.00463 * 359.97438 * 17 15 14 33 33 H 1.09000 * 109.47103 * 60.00191 * 18 17 15 34 34 H 1.08998 * 109.47197 * 299.99963 * 18 17 15 35 35 H 1.09005 * 112.85054 * 314.66753 * 19 18 17 36 36 H 1.08997 * 113.61964 * 254.61322 * 20 19 18 37 37 H 1.09005 * 113.60877 * 25.52036 * 20 19 18 38 38 H 1.09001 * 113.62624 * 220.02430 * 21 20 19 39 39 H 1.09004 * 113.61316 * 89.11841 * 21 20 19 40 40 H 1.08994 * 113.61806 * 270.88267 * 22 21 20 41 41 H 1.09002 * 113.69561 * 139.97781 * 22 21 20 42 42 H 1.08003 * 120.00739 * 359.97438 * 24 23 9 43 43 H 1.08003 * 119.99617 * 180.27608 * 25 24 23 44 44 H 1.07997 * 119.99864 * 179.83497 * 26 25 24 45 45 H 1.07995 * 119.99899 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.00079 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0841 9 6 1.2557 -2.4964 -0.1191 10 1 0.3034 -2.3236 -0.6203 11 6 2.0747 -3.4755 -0.9203 12 8 2.4204 -4.5263 -0.4233 13 7 2.4227 -3.1833 -2.1892 14 7 3.1843 -4.0933 -2.9338 15 6 3.5328 -3.8009 -4.2025 16 16 4.4631 -4.9132 -5.1127 17 7 3.1490 -2.6329 -4.7546 18 6 3.5273 -2.3153 -6.1339 19 6 2.9690 -0.9421 -6.5125 20 6 3.8828 0.2270 -6.1090 21 6 3.5161 0.8730 -7.4585 22 6 3.2392 -0.5489 -7.9745 23 6 1.0049 -3.0587 1.2564 24 6 2.0596 -3.2434 2.1305 25 6 1.8289 -3.7551 3.3938 26 6 0.5445 -4.0905 3.7797 27 6 -0.5096 -3.9106 2.9037 28 6 -0.2794 -3.3948 1.6420 29 1 -0.4850 0.8400 0.0004 30 1 2.1464 -2.3427 -2.5866 31 1 3.4610 -4.9338 -2.5363 32 1 2.6216 -2.0028 -4.2391 33 1 3.1194 -3.0707 -6.8056 34 1 4.6139 -2.3022 -6.2188 35 1 1.9304 -0.8092 -6.2095 36 1 3.5227 0.7845 -5.2443 37 1 4.9344 -0.0485 -6.0283 38 1 4.3567 1.3607 -7.9522 39 1 2.6270 1.5022 -7.4142 40 1 4.1150 -1.0363 -8.4028 41 1 2.3601 -0.6191 -8.6151 42 1 3.0637 -2.9853 1.8276 43 1 2.6524 -3.8953 4.0783 44 1 0.3646 -4.4927 4.7657 45 1 -1.5129 -4.1730 3.2050 46 1 -1.1028 -3.2546 0.9574 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001300089790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:08 Heat of formation + Delta-G solvation = 37.193771 kcal Electronic energy + Delta-G solvation = -27784.214058 eV Core-core repulsion = 23993.899897 eV Total energy + Delta-G solvation = -3790.314161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60769 -40.43440 -39.70309 -38.83514 -36.24640 -35.66897 -33.28324 -32.63801 -31.56084 -29.53798 -28.93398 -26.51090 -26.06464 -24.53419 -24.14933 -23.25589 -22.81476 -21.73467 -20.67134 -19.84390 -19.45565 -18.63514 -17.67556 -17.47480 -17.08838 -16.80973 -16.53294 -16.27848 -16.05073 -15.80864 -15.68672 -15.35207 -15.19150 -14.88082 -14.32626 -14.05522 -14.04774 -13.55304 -13.36225 -13.32123 -13.01011 -12.93944 -12.78126 -12.76511 -12.56016 -12.27370 -12.00387 -11.74748 -11.73854 -11.51756 -11.37447 -11.26999 -11.09917 -10.93233 -10.69404 -9.82273 -9.58237 -9.33556 -9.02046 -8.97641 -8.27821 -6.41711 0.14633 0.16048 0.73495 0.76732 1.08753 1.41735 1.45296 1.51165 1.61591 1.62977 2.37516 2.99061 3.14740 3.32966 3.61991 3.63709 3.76265 3.98052 4.03213 4.21511 4.22055 4.27446 4.40032 4.46469 4.47032 4.63602 4.80448 4.82470 4.88750 4.89055 4.91677 4.93031 5.02053 5.09055 5.11903 5.20043 5.29578 5.32472 5.40300 5.57671 5.59677 5.65037 5.76543 5.78425 5.84243 6.03240 6.14260 6.19312 6.38684 6.65415 7.12409 7.28106 8.79053 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010003 B = 0.003431 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.396888 B = 8158.185395 C =10265.379132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.046 3.954 3 Si 0.948 3.052 4 H -0.258 1.258 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.070 3.930 10 H 0.084 0.916 11 C 0.537 3.463 12 O -0.569 6.569 13 N -0.532 5.532 14 N -0.465 5.465 15 C 0.581 3.419 16 S -0.690 6.690 17 N -0.665 5.665 18 C 0.137 3.863 19 C -0.126 4.126 20 C -0.146 4.146 21 C -0.139 4.139 22 C -0.121 4.121 23 C -0.042 4.042 24 C -0.110 4.110 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.130 4.130 28 C -0.136 4.136 29 H 0.271 0.729 30 H 0.434 0.566 31 H 0.452 0.548 32 H 0.407 0.593 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.134 0.866 44 H 0.145 0.855 45 H 0.140 0.860 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.466 3.063 -8.338 8.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.158 4.158 3 Si 0.774 3.226 4 H -0.183 1.183 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C 0.047 3.953 10 H 0.101 0.899 11 C 0.327 3.673 12 O -0.445 6.445 13 N -0.283 5.283 14 N -0.191 5.191 15 C 0.216 3.784 16 S -0.567 6.567 17 N -0.296 5.296 18 C 0.014 3.986 19 C -0.145 4.145 20 C -0.184 4.184 21 C -0.176 4.176 22 C -0.159 4.159 23 C -0.043 4.043 24 C -0.129 4.129 25 C -0.155 4.155 26 C -0.159 4.159 27 C -0.148 4.148 28 C -0.154 4.154 29 H 0.080 0.920 30 H 0.278 0.722 31 H 0.301 0.699 32 H 0.246 0.754 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.151 0.849 44 H 0.162 0.838 45 H 0.157 0.843 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.032 1.948 -8.615 8.892 hybrid contribution -0.272 1.741 0.910 1.983 sum 0.760 3.688 -7.705 8.576 Atomic orbital electron populations 1.69973 1.06939 1.28430 1.47691 1.25483 0.95402 1.01691 0.93262 0.85755 0.78545 0.79189 0.79130 1.18277 1.20998 1.20962 1.20706 0.92972 0.88810 1.54049 0.92462 1.17952 0.96752 0.91368 0.89216 0.89855 1.22180 0.78860 0.87300 0.78992 1.90644 1.56737 1.27139 1.70024 1.45592 1.52930 1.18027 1.11783 1.44654 1.48553 1.18307 1.07573 1.21935 0.85155 0.88565 0.82789 1.93618 1.52581 1.48908 1.61584 1.45120 1.52180 1.15320 1.16939 1.21937 1.01402 0.97240 0.78002 1.22925 1.00593 0.91778 0.99219 1.23129 0.99786 0.97074 0.98406 1.22843 1.02167 0.96537 0.96049 1.22840 1.02881 0.96152 0.93986 1.20001 0.93362 0.94144 0.96822 1.20887 0.98265 0.99313 0.94409 1.21327 0.98065 1.00069 0.96003 1.21293 0.92424 1.01704 1.00461 1.21320 0.99968 0.99926 0.93606 1.21158 0.96308 1.00266 0.97700 0.92005 0.72167 0.69931 0.75437 0.89568 0.89851 0.87810 0.91823 0.89990 0.90680 0.89674 0.89153 0.90128 0.88411 0.84857 0.83752 0.84253 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -42.34 12.84 21.45 0.28 -42.06 16 2 C 0.05 2.05 5.45 84.65 0.46 2.51 16 3 Si 0.95 36.36 29.54 68.60 2.03 38.39 16 4 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 5 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.53 -23.43 7.47 25.60 0.19 -23.24 16 8 H 0.06 2.60 7.82 -2.91 -0.02 2.58 16 9 C 0.07 2.97 2.38 -13.03 -0.03 2.94 16 10 H 0.08 3.70 7.13 -2.39 -0.02 3.68 16 11 C 0.54 21.04 7.16 87.66 0.63 21.67 16 12 O -0.57 -24.90 15.25 -3.00 -0.05 -24.95 16 13 N -0.53 -16.80 6.16 -173.53 -1.07 -17.87 16 14 N -0.47 -14.11 6.26 -59.11 -0.37 -14.48 16 15 C 0.58 16.69 7.97 179.05 1.43 18.12 16 16 S -0.69 -24.26 29.32 -56.49 -1.66 -25.92 16 17 N -0.66 -14.65 5.52 -350.17 -1.93 -16.58 16 18 C 0.14 2.57 4.95 86.38 0.43 3.00 16 19 C -0.13 -1.82 3.75 -10.27 -0.04 -1.86 16 20 C -0.15 -2.25 7.65 31.21 0.24 -2.01 16 21 C -0.14 -1.74 8.09 31.21 0.25 -1.49 16 22 C -0.12 -1.45 7.64 31.12 0.24 -1.21 16 23 C -0.04 -1.81 4.30 -19.87 -0.09 -1.90 16 24 C -0.11 -4.60 8.30 22.27 0.18 -4.42 16 25 C -0.14 -4.82 10.05 22.27 0.22 -4.59 16 26 C -0.14 -4.49 10.05 22.27 0.22 -4.27 16 27 C -0.13 -4.39 10.05 22.27 0.22 -4.17 16 28 C -0.14 -5.41 9.67 22.27 0.22 -5.20 16 29 H 0.27 12.34 8.31 -92.71 -0.77 11.57 16 30 H 0.43 12.01 6.59 -213.32 -1.41 10.61 16 31 H 0.45 14.69 7.98 -213.32 -1.70 12.99 16 32 H 0.41 7.92 6.39 -92.71 -0.59 7.33 16 33 H 0.09 1.73 7.99 -2.39 -0.02 1.71 16 34 H 0.08 1.73 7.73 -2.39 -0.02 1.71 16 35 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.31 7.92 -2.38 -0.02 1.30 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 1.05 8.10 -2.39 -0.02 1.03 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.10 4.21 7.90 -2.91 -0.02 4.18 16 43 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 44 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 45 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 46 H 0.11 4.35 7.96 -2.91 -0.02 4.32 16 Total: -1.00 -59.10 397.83 -0.67 -59.77 By element: Atomic # 1 Polarization: 52.49 SS G_CDS: -2.68 Total: 49.81 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 4.78 Total: -6.12 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -3.10 Total: -90.99 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.95 kcal Atomic # 14 Polarization: 36.36 SS G_CDS: 2.03 Total: 38.39 kcal Atomic # 16 Polarization: -24.26 SS G_CDS: -1.66 Total: -25.92 kcal Total: -59.10 -0.67 -59.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001300089790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.966 kcal (2) G-P(sol) polarization free energy of solvation -59.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds