Wall clock time and date at job start Wed Apr 1 2020 04:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 120.00178 * 2 1 4 4 H 1.48491 * 109.47420 * 270.00664 * 3 2 1 5 5 H 1.48505 * 109.47105 * 30.00688 * 3 2 1 6 6 H 1.48504 * 109.46998 * 150.00153 * 3 2 1 7 7 C 1.38815 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99854 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99821 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46928 * 179.97438 * 10 9 7 12 12 N 1.28679 * 124.92524 * 90.02420 * 11 10 9 13 13 C 1.32443 * 117.82312 * 180.02562 * 12 11 10 14 14 C 1.34625 * 113.29888 * 359.71483 * 13 12 11 15 15 S 1.70896 * 124.92453 * 269.71980 * 11 10 9 16 16 C 1.50986 * 125.54785 * 180.39723 * 14 13 12 17 17 C 1.53293 * 108.96188 * 342.15814 * 16 14 13 18 18 N 1.47069 * 108.60163 * 45.05979 * 17 16 14 19 19 C 1.34774 * 120.79876 * 115.30351 * 18 17 16 20 20 O 1.21290 * 119.99745 * 359.97093 * 19 18 17 21 21 C 1.50697 * 120.00240 * 179.97438 * 19 18 17 22 22 H 1.09001 * 115.55853 * 34.25940 * 21 19 18 23 23 C 1.53122 * 117.51376 * 248.45659 * 21 19 18 24 24 C 1.52456 * 59.85866 * 252.55013 * 23 21 19 25 25 C 1.53261 * 128.58562 * 117.59851 * 24 23 21 26 26 C 1.53887 * 86.88346 * 114.94358 * 25 24 23 27 27 C 1.53251 * 128.58603 * 242.39661 * 24 23 21 28 28 C 1.47027 * 118.40593 * 295.27457 * 18 17 16 29 29 H 0.97000 * 119.99481 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00331 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47073 * 299.99655 * 10 9 7 32 32 H 1.09000 * 109.47212 * 59.99738 * 10 9 7 33 33 H 1.09000 * 109.55842 * 222.31311 * 16 14 13 34 34 H 1.09005 * 109.63785 * 102.05317 * 16 14 13 35 35 H 1.09005 * 109.61850 * 285.32415 * 17 16 14 36 36 H 1.08999 * 109.61731 * 164.79386 * 17 16 14 37 37 H 1.09002 * 117.51498 * 359.97438 * 23 21 19 38 38 H 1.08999 * 117.51492 * 145.10175 * 23 21 19 39 39 H 1.08996 * 113.64856 * 229.44657 * 25 24 23 40 40 H 1.09005 * 113.64163 * 0.44878 * 25 24 23 41 41 H 1.09001 * 113.59131 * 270.39569 * 26 25 24 42 42 H 1.09000 * 113.66375 * 139.58408 * 26 25 24 43 43 H 1.08995 * 113.64673 * 359.55547 * 27 24 23 44 44 H 1.09002 * 113.64964 * 130.55585 * 27 24 23 45 45 H 1.09004 * 109.81552 * 285.68186 * 28 18 17 46 46 H 1.09004 * 109.86806 * 164.80192 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0787 -4.8022 0.0001 12 7 0.5998 -5.3627 -1.0546 13 6 -0.2547 -6.3612 -0.8903 14 6 -0.4943 -6.6496 0.4026 15 16 0.4486 -5.5500 1.4017 16 6 -1.4128 -7.7383 0.9035 17 6 -2.3531 -8.1582 -0.2320 18 7 -1.5630 -8.3112 -1.4630 19 6 -1.4338 -9.5151 -2.0549 20 8 -1.9722 -10.4889 -1.5725 21 6 -0.6204 -9.6512 -3.3162 22 1 0.2493 -8.9981 -3.3877 23 6 -1.3714 -9.9747 -4.6108 24 6 -0.5119 -11.0391 -3.9380 25 6 -0.9453 -12.3864 -3.3500 26 6 -0.0940 -13.0450 -4.4498 27 6 0.7328 -11.7476 -4.4832 28 6 -0.9179 -7.1192 -2.0327 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.6846 -3.7146 -0.8906 32 1 2.6847 -3.7146 0.8894 33 1 -1.9989 -7.3637 1.7428 34 1 -0.8226 -8.5965 1.2248 35 1 -3.1146 -7.3922 -0.3788 36 1 -2.8281 -9.1068 0.0181 37 1 -2.4537 -10.0894 -4.5499 38 1 -0.9959 -9.5340 -5.5343 39 1 -0.5708 -12.5642 -2.3419 40 1 -2.0131 -12.5827 -3.4472 41 1 -0.6438 -13.2357 -5.3715 42 1 0.4694 -13.9126 -4.1064 43 1 1.0104 -11.4318 -5.4888 44 1 1.5745 -11.7476 -3.7906 45 1 -1.6662 -6.4867 -2.5104 46 1 -0.1662 -7.4182 -2.7633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316805521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:30 Heat of formation + Delta-G solvation = 60.245858 kcal Electronic energy + Delta-G solvation = -27326.005295 eV Core-core repulsion = 23536.690748 eV Total energy + Delta-G solvation = -3789.314547 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.84665 -40.87680 -39.51162 -37.55760 -36.45516 -34.80222 -33.69811 -33.15825 -31.18109 -28.44095 -27.48963 -26.57031 -25.53642 -25.32683 -23.96313 -23.68854 -22.94142 -20.69624 -19.64000 -19.43943 -19.04400 -18.91927 -18.01816 -17.31228 -16.82275 -16.63070 -16.13142 -16.09700 -15.90974 -15.67165 -15.48192 -15.20470 -14.92868 -14.80573 -14.07245 -14.05632 -13.90281 -13.83353 -13.47607 -13.25097 -13.07973 -12.98261 -12.97410 -12.77838 -12.51479 -12.43884 -12.26648 -12.14069 -12.12353 -11.88310 -11.30001 -11.04194 -11.03747 -10.83587 -10.63354 -10.62026 -10.24104 -9.89819 -9.64485 -9.10700 -7.97582 -5.29854 -0.38224 0.30227 0.72902 1.38047 1.48851 1.51249 1.59168 1.63608 1.74665 2.55495 2.72743 2.91833 3.23863 3.37168 3.57737 3.64510 3.71288 3.80236 3.85142 3.87947 3.92945 3.97777 4.06018 4.17437 4.23100 4.29722 4.48100 4.51411 4.55210 4.61630 4.70526 4.75904 4.79409 4.82778 4.84695 4.86082 4.89698 5.00480 5.09719 5.12964 5.16551 5.27702 5.39451 5.47123 5.51898 6.20285 6.20749 6.71707 7.03768 7.28359 7.94084 8.21391 9.25693 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.002181 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.399745 B =12833.408853 C =13511.863248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.248 4.248 8 H 0.085 0.915 9 N -0.736 5.736 10 C 0.227 3.773 11 C 0.038 3.962 12 N -0.480 5.480 13 C 0.027 3.973 14 C -0.225 4.225 15 S 0.162 5.838 16 C -0.050 4.050 17 C 0.115 3.885 18 N -0.608 5.608 19 C 0.551 3.449 20 O -0.563 6.563 21 C -0.196 4.196 22 H 0.135 0.865 23 C -0.104 4.104 24 C -0.136 4.136 25 C -0.089 4.089 26 C -0.133 4.133 27 C -0.095 4.095 28 C 0.200 3.800 29 H 0.252 0.748 30 H 0.373 0.627 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.130 0.870 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -25.675 -5.879 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.379 4.379 8 H 0.103 0.897 9 N -0.380 5.380 10 C 0.098 3.902 11 C -0.240 4.240 12 N -0.195 5.195 13 C -0.106 4.106 14 C -0.347 4.347 15 S 0.420 5.580 16 C -0.090 4.090 17 C -0.009 4.009 18 N -0.340 5.340 19 C 0.341 3.659 20 O -0.442 6.442 21 C -0.217 4.217 22 H 0.152 0.848 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.170 4.170 27 C -0.132 4.132 28 C 0.074 3.926 29 H 0.061 0.939 30 H 0.205 0.795 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.148 0.852 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.118 0.882 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.414 -25.708 -5.007 26.302 hybrid contribution -0.333 1.156 -0.367 1.258 sum -2.748 -24.552 -5.373 25.283 Atomic orbital electron populations 1.69846 1.06817 1.26279 1.58958 1.25656 0.96436 1.01342 1.03129 0.85047 0.77763 0.78893 0.77449 1.21405 1.22223 1.18946 1.19649 0.91809 0.84488 1.41986 0.89707 1.42426 1.05503 1.00266 1.89784 1.19301 0.90270 0.80296 1.00344 1.26861 1.03457 1.02224 0.91468 1.65737 1.11409 1.09375 1.32989 1.21310 0.98316 0.96141 0.94876 1.26318 1.07398 1.05054 0.95950 1.83749 1.37708 1.25126 1.11411 1.20603 0.95503 0.93916 0.99006 1.21740 0.92940 1.03746 0.82480 1.48058 1.51019 1.07745 1.27184 1.19968 0.79642 0.81396 0.84847 1.90662 1.49606 1.37722 1.66186 1.22252 1.03239 1.03286 0.92940 0.84776 1.22894 0.98398 0.98757 0.94059 1.22507 1.00818 0.88488 1.01798 1.22297 0.99676 0.92658 0.98052 1.22795 0.98253 0.96848 0.99108 1.22520 0.94437 0.94749 1.01521 1.20324 0.96833 0.84634 0.90765 0.93894 0.79521 0.93252 0.92568 0.87111 0.89330 0.89376 0.87606 0.88402 0.85170 0.91242 0.92393 0.89098 0.90493 0.89700 0.89727 0.88179 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.34 13.06 21.65 0.28 -59.06 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 3 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.25 -13.70 9.99 84.03 0.84 -12.86 16 8 H 0.09 4.40 7.83 -2.91 -0.02 4.37 16 9 N -0.74 -37.90 5.59 -347.16 -1.94 -39.84 16 10 C 0.23 9.34 6.84 85.63 0.59 9.93 16 11 C 0.04 1.39 6.75 88.57 0.60 1.99 16 12 N -0.48 -17.15 10.51 -176.96 -1.86 -19.01 16 13 C 0.03 0.77 6.87 42.15 0.29 1.06 16 14 C -0.23 -5.98 6.43 24.95 0.16 -5.82 16 15 S 0.16 4.82 23.17 -56.49 -1.31 3.51 16 16 C -0.05 -0.97 6.44 30.04 0.19 -0.77 16 17 C 0.11 2.17 6.41 86.37 0.55 2.73 16 18 N -0.61 -12.78 2.92 -819.78 -2.39 -15.17 16 19 C 0.55 12.38 7.49 87.66 0.66 13.03 16 20 O -0.56 -15.56 14.57 -3.06 -0.04 -15.61 16 21 C -0.20 -3.45 5.24 -11.68 -0.06 -3.51 16 22 H 0.13 2.11 6.48 -2.39 -0.02 2.09 16 23 C -0.10 -1.44 10.23 30.45 0.31 -1.13 16 24 C -0.14 -2.19 2.88 -52.37 -0.15 -2.34 16 25 C -0.09 -1.59 6.47 30.98 0.20 -1.39 16 26 C -0.13 -1.64 8.08 31.19 0.25 -1.39 16 27 C -0.10 -1.20 8.10 30.98 0.25 -0.95 16 28 C 0.20 4.37 6.66 86.05 0.57 4.94 16 29 H 0.25 14.94 8.31 -92.71 -0.77 14.16 16 30 H 0.37 20.90 7.66 -92.71 -0.71 20.19 16 31 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.11 1.99 7.01 -2.39 -0.02 1.98 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.46 8.05 -2.39 -0.02 1.44 16 40 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 46 H 0.12 2.25 5.66 -2.38 -0.01 2.23 16 Total: -1.00 -70.05 387.90 0.78 -69.27 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.30 Total: 28.53 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 5.72 Total: -0.19 kcal Atomic # 7 Polarization: -127.17 SS G_CDS: -5.91 Total: -133.08 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.04 Total: -15.61 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.31 Total: 3.51 kcal Total: -70.05 0.78 -69.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316805521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.518 kcal (2) G-P(sol) polarization free energy of solvation -70.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds