Wall clock time and date at job start Wed Apr 1 2020 04:02:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.37321 * 125.82532 * 2 1
4 4 C 1.50704 * 125.58567 * 359.95207 * 3 2 1
5 5 F 1.39907 * 109.46888 * 300.00467 * 4 3 2
6 6 F 1.39905 * 109.47157 * 59.99997 * 4 3 2
7 7 N 1.29415 * 108.83466 * 179.69070 * 3 2 1
8 8 N 1.40169 * 108.13037 * 0.44154 * 7 3 2
9 9 C 1.46506 * 126.35073 * 179.81792 * 8 7 3
10 10 N 1.46908 * 109.46840 * 269.69034 * 9 8 7
11 11 C 1.46954 * 110.99966 * 66.20365 * 10 9 8
12 12 C 1.53057 * 109.36263 * 183.18687 * 11 10 9
13 13 N 1.46956 * 109.36162 * 301.59585 * 12 11 10
14 14 C 1.46899 * 110.99677 * 183.18894 * 13 12 11
15 15 C 1.50698 * 109.47292 * 170.00200 * 14 13 12
16 16 H 1.07998 * 119.99743 * 359.97438 * 15 14 13
17 17 C 1.37876 * 120.00183 * 180.02562 * 15 14 13
18 18 N 1.31510 * 120.00150 * 359.97438 * 17 15 14
19 19 Si 1.86804 * 119.99908 * 180.02562 * 17 15 14
20 20 H 1.48496 * 109.47247 * 59.99530 * 19 17 15
21 21 H 1.48503 * 109.46810 * 179.97438 * 19 17 15
22 22 H 1.48505 * 109.46719 * 299.99556 * 19 17 15
23 23 C 1.46954 * 110.88042 * 59.32472 * 13 12 11
24 24 C 1.46956 * 110.99532 * 189.99960 * 10 9 8
25 25 C 1.34813 * 125.83434 * 179.97438 * 2 1 3
26 26 S 1.71195 * 126.29759 * 0.06361 * 25 2 1
27 27 H 1.08995 * 109.47308 * 270.00151 * 1 2 3
28 28 H 1.08998 * 109.47148 * 30.00499 * 1 2 3
29 29 H 1.09002 * 109.46355 * 150.00474 * 1 2 3
30 30 H 1.08993 * 109.47491 * 180.02562 * 4 3 2
31 31 H 1.08997 * 109.47176 * 149.69491 * 9 8 7
32 32 H 1.09003 * 109.47116 * 29.68866 * 9 8 7
33 33 H 1.08997 * 109.49355 * 63.21813 * 11 10 9
34 34 H 1.09004 * 109.48943 * 303.15264 * 11 10 9
35 35 H 1.09002 * 109.48707 * 181.63135 * 12 11 10
36 36 H 1.09002 * 109.48655 * 61.56567 * 12 11 10
37 37 H 1.09003 * 109.47063 * 289.99903 * 14 13 12
38 38 H 1.09002 * 109.47208 * 50.00081 * 14 13 12
39 39 H 0.96999 * 120.00715 * 180.02562 * 18 17 15
40 40 H 1.08997 * 109.49355 * 60.64341 * 23 13 12
41 41 H 1.09004 * 109.48943 * 180.70890 * 23 13 12
42 42 H 1.09002 * 109.48908 * 56.84799 * 24 10 9
43 43 H 1.09002 * 109.49369 * 296.77670 * 24 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2688 1.1134 0.0000
4 6 1.7884 2.5418 -0.0010
5 9 1.0153 2.7730 -1.1440
6 9 1.0138 2.7742 1.1407
7 7 3.5064 0.7352 0.0066
8 7 3.5344 -0.6662 0.0009
9 6 4.7314 -1.5109 0.0015
10 7 5.1319 -1.7935 -1.3834
11 6 5.5729 -0.5684 -2.0645
12 6 5.9049 -0.8904 -3.5236
13 7 6.9517 -1.9207 -3.5690
14 6 7.3523 -2.2034 -4.9538
15 6 8.5835 -3.0723 -4.9532
16 1 9.0246 -3.3831 -4.0177
17 6 9.1474 -3.4697 -6.1470
18 7 8.6106 -3.0908 -7.2862
19 14 10.6733 -4.5474 -6.1462
20 1 10.3777 -5.8234 -5.4467
21 1 11.0782 -4.8330 -7.5461
22 1 11.7766 -3.8426 -5.4452
23 6 6.5108 -3.1459 -2.8878
24 6 6.1788 -2.8239 -1.4288
25 6 2.2543 -1.0929 0.0005
26 16 1.7290 -2.7223 -0.0003
27 1 -0.3633 0.0000 1.0276
28 1 -0.3633 0.8899 -0.5139
29 1 -0.3632 -0.8901 -0.5138
30 1 2.6465 3.2138 -0.0012
31 1 4.5149 -2.4474 0.5154
32 1 5.5412 -0.9930 0.5155
33 1 6.4600 -0.1753 -1.5680
34 1 4.7762 0.1747 -2.0283
35 1 6.2598 0.0110 -4.0232
36 1 5.0108 -1.2578 -4.0273
37 1 6.5424 -2.7212 -5.4678
38 1 7.5687 -1.2669 -5.4678
39 1 9.0071 -3.3706 -8.1261
40 1 5.6237 -3.5390 -3.3844
41 1 7.3074 -3.8890 -2.9240
42 1 5.8238 -3.7253 -0.9292
43 1 7.0728 -2.4565 -0.9250
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001329734943.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:02:30
Heat of formation + Delta-G solvation = 25.230906 kcal
Electronic energy + Delta-G solvation = -28701.545925 eV
Core-core repulsion = 24388.776237 eV
Total energy + Delta-G solvation = -4312.769688 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 347.129 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-50.02855 -48.00975 -43.22453 -39.00085 -36.40928 -34.89136 -33.58415 -32.40541
-30.59007 -29.56067 -28.34469 -27.64884 -25.89366 -24.52228 -23.23135 -23.01441
-22.27638 -21.44720 -19.34519 -18.85551 -18.42892 -18.39947 -17.57783 -17.21861
-16.68601 -16.39597 -16.18215 -15.86092 -14.88862 -14.83548 -14.66359 -14.37923
-14.33286 -14.04251 -13.99205 -13.81225 -13.60338 -13.38069 -13.31730 -12.73192
-12.55536 -12.23752 -12.13504 -11.75481 -11.56553 -11.51109 -11.26352 -11.08320
-10.97115 -10.77615 -10.72075 -10.48924 -10.35236 -9.79094 -9.23224 -8.53415
-8.43549 -7.94942 -7.80767 -7.30375 -6.04193 -4.06203 0.59955 0.76557
0.88865 1.47920 2.01829 2.71189 3.12176 3.32558 3.36767 3.39183
3.44553 3.77142 3.90394 3.91026 4.12765 4.40388 4.61511 4.65854
4.84947 4.87277 4.95649 5.10552 5.18624 5.30942 5.36859 5.39285
5.56500 5.65928 5.75421 5.83611 5.93583 6.06784 6.31699 6.45663
6.50518 6.63368 6.84142 6.96025 7.27018 7.32849 7.76033 8.04113
8.15353 8.50257 9.00668 9.58151 11.06688
Molecular weight = 347.13amu
Principal moments of inertia in cm(-1)
A = 0.018911 B = 0.002426 C = 0.002289
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1480.281027 B =11537.276619 C =12228.904042
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.077 3.923
2 N -0.484 5.484
3 C 0.189 3.811
4 C 0.367 3.633
5 F -0.176 7.176
6 F -0.177 7.177
7 N -0.230 5.230
8 N -0.360 5.360
9 C 0.310 3.690
10 N -0.547 5.547
11 C 0.061 3.939
12 C 0.059 3.941
13 N -0.538 5.538
14 C 0.195 3.805
15 C -0.509 4.509
16 H 0.063 0.937
17 C 0.056 3.944
18 N -0.898 5.898
19 Si 0.898 3.102
20 H -0.276 1.276
21 H -0.288 1.288
22 H -0.276 1.276
23 C 0.068 3.932
24 C 0.067 3.933
25 C 0.472 3.528
26 S -0.546 6.546
27 H 0.092 0.908
28 H 0.096 0.904
29 H 0.115 0.885
30 H 0.162 0.838
31 H 0.130 0.870
32 H 0.081 0.919
33 H 0.046 0.954
34 H 0.064 0.936
35 H 0.073 0.927
36 H 0.030 0.970
37 H -0.008 1.008
38 H 0.029 0.971
39 H 0.262 0.738
40 H 0.033 0.967
41 H 0.093 0.907
42 H 0.081 0.919
43 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.752 13.425 18.663 27.868
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 N -0.185 5.185
3 C -0.094 4.094
4 C 0.310 3.690
5 F -0.157 7.157
6 F -0.158 7.158
7 N -0.052 5.052
8 N -0.155 5.155
9 C 0.101 3.899
10 N -0.274 5.274
11 C -0.067 4.067
12 C -0.070 4.070
13 N -0.263 5.263
14 C 0.070 3.930
15 C -0.548 4.548
16 H 0.081 0.919
17 C -0.146 4.146
18 N -0.538 5.538
19 Si 0.726 3.274
20 H -0.202 1.202
21 H -0.214 1.214
22 H -0.202 1.202
23 C -0.061 4.061
24 C -0.060 4.060
25 C 0.114 3.886
26 S -0.418 6.418
27 H 0.110 0.890
28 H 0.114 0.886
29 H 0.133 0.867
30 H 0.179 0.821
31 H 0.148 0.852
32 H 0.098 0.902
33 H 0.064 0.936
34 H 0.082 0.918
35 H 0.091 0.909
36 H 0.048 0.952
37 H 0.010 0.990
38 H 0.047 0.953
39 H 0.072 0.928
40 H 0.051 0.949
41 H 0.111 0.889
42 H 0.100 0.900
43 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -15.005 12.690 18.454 26.958
hybrid contribution 0.158 0.130 -0.295 0.359
sum -14.847 12.820 18.159 26.731
Atomic orbital electron populations
1.22381 0.71924 1.06713 1.05370 1.46014 1.10076 1.03162 1.59266
1.25085 0.87840 0.92973 1.03500 1.19609 0.89506 0.87548 0.72350
1.93122 1.77603 1.94692 1.50245 1.93116 1.77625 1.94725 1.50366
1.77068 1.15965 0.93459 1.18696 1.49599 1.06514 1.01365 1.57974
1.22378 0.81291 0.93524 0.92756 1.61989 1.41672 1.11086 1.12657
1.22229 0.98265 0.90345 0.95812 1.22024 0.94199 0.97082 0.93722
1.62327 1.35105 1.08035 1.20844 1.19693 0.95226 0.96573 0.81537
1.21094 1.10775 1.30461 0.92458 0.91922 1.24990 0.97590 0.96509
0.95464 1.69944 1.40691 1.45768 0.97352 0.86556 0.83113 0.80812
0.76894 1.20206 1.21355 1.20195 1.21999 0.99428 0.93679 0.90974
1.22233 0.90920 0.93345 0.99482 1.24014 0.83306 0.94134 0.87113
1.93504 1.82811 0.93950 1.71554 0.88980 0.88568 0.86704 0.82123
0.85195 0.90167 0.93618 0.91751 0.90873 0.95210 0.98991 0.95264
0.92822 0.94877 0.88932 0.90017 0.93491
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.49 10.69 59.85 0.64 1.13 16
2 N -0.48 -4.60 3.14 -121.97 -0.38 -4.98 16
3 C 0.19 1.53 7.42 -154.18 -1.14 0.39 16
4 C 0.37 1.67 5.35 36.01 0.19 1.86 16
5 F -0.18 -1.02 16.38 2.25 0.04 -0.98 16
6 F -0.18 -0.90 17.30 2.25 0.04 -0.86 16
7 N -0.23 -2.30 11.51 32.97 0.38 -1.92 16
8 N -0.36 -4.29 3.34 -64.99 -0.22 -4.51 16
9 C 0.31 3.61 5.94 -63.30 -0.38 3.23 16
10 N -0.55 -7.89 4.85 -238.35 -1.16 -9.05 16
11 C 0.06 0.92 5.51 -3.77 -0.02 0.90 16
12 C 0.06 1.08 5.61 -3.76 -0.02 1.06 16
13 N -0.54 -11.48 4.70 -235.90 -1.11 -12.59 16
14 C 0.19 5.07 4.72 -4.98 -0.02 5.05 16
15 C -0.51 -14.15 8.47 -34.44 -0.29 -14.44 16
16 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16
17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16
18 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16
19 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16
20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16
23 C 0.07 1.30 5.43 -3.77 -0.02 1.28 16
24 C 0.07 1.00 5.61 -3.76 -0.02 0.97 16
25 C 0.47 5.99 7.86 -86.74 -0.68 5.30 16
26 S -0.55 -8.61 29.61 -107.50 -3.18 -11.79 16
27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16
28 H 0.10 0.42 6.95 -51.93 -0.36 0.06 16
29 H 0.11 0.83 7.64 -51.93 -0.40 0.44 16
30 H 0.16 0.19 8.14 -51.93 -0.42 -0.23 16
31 H 0.13 1.47 7.58 -51.93 -0.39 1.07 16
32 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16
33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
34 H 0.06 0.92 6.71 -51.93 -0.35 0.57 16
35 H 0.07 1.31 8.07 -51.93 -0.42 0.90 16
36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
37 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16
38 H 0.03 0.81 8.03 -51.93 -0.42 0.40 16
39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16
41 H 0.09 1.87 6.79 -51.93 -0.35 1.52 16
42 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16
43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
LS Contribution 373.40 15.07 5.63 5.63
Total: -1.00 -34.44 373.40 -12.11 -46.56
By element:
Atomic # 1 Polarization: 1.77 SS G_CDS: -6.00 Total: -4.23 kcal
Atomic # 6 Polarization: 10.08 SS G_CDS: -1.87 Total: 8.22 kcal
Atomic # 7 Polarization: -57.28 SS G_CDS: -1.75 Total: -59.03 kcal
Atomic # 9 Polarization: -1.91 SS G_CDS: 0.08 Total: -1.84 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal
Atomic # 16 Polarization: -8.61 SS G_CDS: -3.18 Total: -11.79 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -34.44 -12.11 -46.56 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001329734943.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.787 kcal
(2) G-P(sol) polarization free energy of solvation -34.445 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.342 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.111 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.556 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.231 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds