Wall clock time and date at job start Wed Apr 1 2020 04:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37321 * 125.82532 * 2 1 4 4 C 1.50704 * 125.58567 * 359.95207 * 3 2 1 5 5 F 1.39907 * 109.46888 * 300.00467 * 4 3 2 6 6 F 1.39905 * 109.47157 * 59.99997 * 4 3 2 7 7 N 1.29415 * 108.83466 * 179.69070 * 3 2 1 8 8 N 1.40169 * 108.13037 * 0.44154 * 7 3 2 9 9 C 1.46506 * 126.35073 * 179.81792 * 8 7 3 10 10 N 1.46908 * 109.46840 * 269.69034 * 9 8 7 11 11 C 1.46954 * 110.99966 * 66.20365 * 10 9 8 12 12 C 1.53057 * 109.36263 * 183.18687 * 11 10 9 13 13 N 1.46956 * 109.36162 * 301.59585 * 12 11 10 14 14 C 1.46899 * 110.99677 * 183.18894 * 13 12 11 15 15 C 1.50698 * 109.47292 * 170.00200 * 14 13 12 16 16 H 1.07998 * 119.99743 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00183 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00150 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99908 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47247 * 59.99530 * 19 17 15 21 21 H 1.48503 * 109.46810 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46719 * 299.99556 * 19 17 15 23 23 C 1.46954 * 110.88042 * 59.32472 * 13 12 11 24 24 C 1.46956 * 110.99532 * 189.99960 * 10 9 8 25 25 C 1.34813 * 125.83434 * 179.97438 * 2 1 3 26 26 S 1.71195 * 126.29759 * 0.06361 * 25 2 1 27 27 H 1.08995 * 109.47308 * 270.00151 * 1 2 3 28 28 H 1.08998 * 109.47148 * 30.00499 * 1 2 3 29 29 H 1.09002 * 109.46355 * 150.00474 * 1 2 3 30 30 H 1.08993 * 109.47491 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47176 * 149.69491 * 9 8 7 32 32 H 1.09003 * 109.47116 * 29.68866 * 9 8 7 33 33 H 1.08997 * 109.49355 * 63.21813 * 11 10 9 34 34 H 1.09004 * 109.48943 * 303.15264 * 11 10 9 35 35 H 1.09002 * 109.48707 * 181.63135 * 12 11 10 36 36 H 1.09002 * 109.48655 * 61.56567 * 12 11 10 37 37 H 1.09003 * 109.47063 * 289.99903 * 14 13 12 38 38 H 1.09002 * 109.47208 * 50.00081 * 14 13 12 39 39 H 0.96999 * 120.00715 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.49355 * 60.64341 * 23 13 12 41 41 H 1.09004 * 109.48943 * 180.70890 * 23 13 12 42 42 H 1.09002 * 109.48908 * 56.84799 * 24 10 9 43 43 H 1.09002 * 109.49369 * 296.77670 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2688 1.1134 0.0000 4 6 1.7884 2.5418 -0.0010 5 9 1.0153 2.7730 -1.1440 6 9 1.0138 2.7742 1.1407 7 7 3.5064 0.7352 0.0066 8 7 3.5344 -0.6662 0.0009 9 6 4.7314 -1.5109 0.0015 10 7 5.1319 -1.7935 -1.3834 11 6 5.5729 -0.5684 -2.0645 12 6 5.9049 -0.8904 -3.5236 13 7 6.9517 -1.9207 -3.5690 14 6 7.3523 -2.2034 -4.9538 15 6 8.5835 -3.0723 -4.9532 16 1 9.0246 -3.3831 -4.0177 17 6 9.1474 -3.4697 -6.1470 18 7 8.6106 -3.0908 -7.2862 19 14 10.6733 -4.5474 -6.1462 20 1 10.3777 -5.8234 -5.4467 21 1 11.0782 -4.8330 -7.5461 22 1 11.7766 -3.8426 -5.4452 23 6 6.5108 -3.1459 -2.8878 24 6 6.1788 -2.8239 -1.4288 25 6 2.2543 -1.0929 0.0005 26 16 1.7290 -2.7223 -0.0003 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3632 -0.8901 -0.5138 30 1 2.6465 3.2138 -0.0012 31 1 4.5149 -2.4474 0.5154 32 1 5.5412 -0.9930 0.5155 33 1 6.4600 -0.1753 -1.5680 34 1 4.7762 0.1747 -2.0283 35 1 6.2598 0.0110 -4.0232 36 1 5.0108 -1.2578 -4.0273 37 1 6.5424 -2.7212 -5.4678 38 1 7.5687 -1.2669 -5.4678 39 1 9.0071 -3.3706 -8.1261 40 1 5.6237 -3.5390 -3.3844 41 1 7.3074 -3.8890 -2.9240 42 1 5.8238 -3.7253 -0.9292 43 1 7.0728 -2.4565 -0.9250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329734943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:30 Heat of formation + Delta-G solvation = 25.230906 kcal Electronic energy + Delta-G solvation = -28701.545925 eV Core-core repulsion = 24388.776237 eV Total energy + Delta-G solvation = -4312.769688 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.02855 -48.00975 -43.22453 -39.00085 -36.40928 -34.89136 -33.58415 -32.40541 -30.59007 -29.56067 -28.34469 -27.64884 -25.89366 -24.52228 -23.23135 -23.01441 -22.27638 -21.44720 -19.34519 -18.85551 -18.42892 -18.39947 -17.57783 -17.21861 -16.68601 -16.39597 -16.18215 -15.86092 -14.88862 -14.83548 -14.66359 -14.37923 -14.33286 -14.04251 -13.99205 -13.81225 -13.60338 -13.38069 -13.31730 -12.73192 -12.55536 -12.23752 -12.13504 -11.75481 -11.56553 -11.51109 -11.26352 -11.08320 -10.97115 -10.77615 -10.72075 -10.48924 -10.35236 -9.79094 -9.23224 -8.53415 -8.43549 -7.94942 -7.80767 -7.30375 -6.04193 -4.06203 0.59955 0.76557 0.88865 1.47920 2.01829 2.71189 3.12176 3.32558 3.36767 3.39183 3.44553 3.77142 3.90394 3.91026 4.12765 4.40388 4.61511 4.65854 4.84947 4.87277 4.95649 5.10552 5.18624 5.30942 5.36859 5.39285 5.56500 5.65928 5.75421 5.83611 5.93583 6.06784 6.31699 6.45663 6.50518 6.63368 6.84142 6.96025 7.27018 7.32849 7.76033 8.04113 8.15353 8.50257 9.00668 9.58151 11.06688 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.002426 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.281027 B =11537.276619 C =12228.904042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.484 5.484 3 C 0.189 3.811 4 C 0.367 3.633 5 F -0.176 7.176 6 F -0.177 7.177 7 N -0.230 5.230 8 N -0.360 5.360 9 C 0.310 3.690 10 N -0.547 5.547 11 C 0.061 3.939 12 C 0.059 3.941 13 N -0.538 5.538 14 C 0.195 3.805 15 C -0.509 4.509 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.068 3.932 24 C 0.067 3.933 25 C 0.472 3.528 26 S -0.546 6.546 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.162 0.838 31 H 0.130 0.870 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.030 0.970 37 H -0.008 1.008 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.033 0.967 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.752 13.425 18.663 27.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.185 5.185 3 C -0.094 4.094 4 C 0.310 3.690 5 F -0.157 7.157 6 F -0.158 7.158 7 N -0.052 5.052 8 N -0.155 5.155 9 C 0.101 3.899 10 N -0.274 5.274 11 C -0.067 4.067 12 C -0.070 4.070 13 N -0.263 5.263 14 C 0.070 3.930 15 C -0.548 4.548 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.061 4.061 24 C -0.060 4.060 25 C 0.114 3.886 26 S -0.418 6.418 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.133 0.867 30 H 0.179 0.821 31 H 0.148 0.852 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.010 0.990 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.005 12.690 18.454 26.958 hybrid contribution 0.158 0.130 -0.295 0.359 sum -14.847 12.820 18.159 26.731 Atomic orbital electron populations 1.22381 0.71924 1.06713 1.05370 1.46014 1.10076 1.03162 1.59266 1.25085 0.87840 0.92973 1.03500 1.19609 0.89506 0.87548 0.72350 1.93122 1.77603 1.94692 1.50245 1.93116 1.77625 1.94725 1.50366 1.77068 1.15965 0.93459 1.18696 1.49599 1.06514 1.01365 1.57974 1.22378 0.81291 0.93524 0.92756 1.61989 1.41672 1.11086 1.12657 1.22229 0.98265 0.90345 0.95812 1.22024 0.94199 0.97082 0.93722 1.62327 1.35105 1.08035 1.20844 1.19693 0.95226 0.96573 0.81537 1.21094 1.10775 1.30461 0.92458 0.91922 1.24990 0.97590 0.96509 0.95464 1.69944 1.40691 1.45768 0.97352 0.86556 0.83113 0.80812 0.76894 1.20206 1.21355 1.20195 1.21999 0.99428 0.93679 0.90974 1.22233 0.90920 0.93345 0.99482 1.24014 0.83306 0.94134 0.87113 1.93504 1.82811 0.93950 1.71554 0.88980 0.88568 0.86704 0.82123 0.85195 0.90167 0.93618 0.91751 0.90873 0.95210 0.98991 0.95264 0.92822 0.94877 0.88932 0.90017 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 10.69 59.85 0.64 1.13 16 2 N -0.48 -4.60 3.14 -121.97 -0.38 -4.98 16 3 C 0.19 1.53 7.42 -154.18 -1.14 0.39 16 4 C 0.37 1.67 5.35 36.01 0.19 1.86 16 5 F -0.18 -1.02 16.38 2.25 0.04 -0.98 16 6 F -0.18 -0.90 17.30 2.25 0.04 -0.86 16 7 N -0.23 -2.30 11.51 32.97 0.38 -1.92 16 8 N -0.36 -4.29 3.34 -64.99 -0.22 -4.51 16 9 C 0.31 3.61 5.94 -63.30 -0.38 3.23 16 10 N -0.55 -7.89 4.85 -238.35 -1.16 -9.05 16 11 C 0.06 0.92 5.51 -3.77 -0.02 0.90 16 12 C 0.06 1.08 5.61 -3.76 -0.02 1.06 16 13 N -0.54 -11.48 4.70 -235.90 -1.11 -12.59 16 14 C 0.19 5.07 4.72 -4.98 -0.02 5.05 16 15 C -0.51 -14.15 8.47 -34.44 -0.29 -14.44 16 16 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 19 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 C 0.07 1.30 5.43 -3.77 -0.02 1.28 16 24 C 0.07 1.00 5.61 -3.76 -0.02 0.97 16 25 C 0.47 5.99 7.86 -86.74 -0.68 5.30 16 26 S -0.55 -8.61 29.61 -107.50 -3.18 -11.79 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 0.42 6.95 -51.93 -0.36 0.06 16 29 H 0.11 0.83 7.64 -51.93 -0.40 0.44 16 30 H 0.16 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.13 1.47 7.58 -51.93 -0.39 1.07 16 32 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.92 6.71 -51.93 -0.35 0.57 16 35 H 0.07 1.31 8.07 -51.93 -0.42 0.90 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 38 H 0.03 0.81 8.03 -51.93 -0.42 0.40 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.87 6.79 -51.93 -0.35 1.52 16 42 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 373.40 15.07 5.63 5.63 Total: -1.00 -34.44 373.40 -12.11 -46.56 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -6.00 Total: -4.23 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -1.87 Total: 8.22 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -1.75 Total: -59.03 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.08 Total: -1.84 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -3.18 Total: -11.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.44 -12.11 -46.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329734943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.787 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds