Wall clock time and date at job start Wed Apr 1 2020 04:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37321 * 125.82532 * 2 1 4 4 C 1.50704 * 125.58567 * 359.95207 * 3 2 1 5 5 F 1.39907 * 109.46888 * 300.00467 * 4 3 2 6 6 F 1.39905 * 109.47157 * 59.99997 * 4 3 2 7 7 N 1.29415 * 108.83466 * 179.69070 * 3 2 1 8 8 N 1.40169 * 108.13037 * 0.44154 * 7 3 2 9 9 C 1.46506 * 126.35073 * 179.81792 * 8 7 3 10 10 N 1.46908 * 109.46840 * 269.69034 * 9 8 7 11 11 C 1.46954 * 110.99966 * 66.20365 * 10 9 8 12 12 C 1.53057 * 109.36263 * 183.18687 * 11 10 9 13 13 N 1.46956 * 109.36162 * 301.59585 * 12 11 10 14 14 C 1.46899 * 110.99677 * 183.18894 * 13 12 11 15 15 C 1.50698 * 109.47292 * 170.00200 * 14 13 12 16 16 H 1.07998 * 119.99743 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00183 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00150 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99908 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47247 * 59.99530 * 19 17 15 21 21 H 1.48503 * 109.46810 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46719 * 299.99556 * 19 17 15 23 23 C 1.46954 * 110.88042 * 59.32472 * 13 12 11 24 24 C 1.46956 * 110.99532 * 189.99960 * 10 9 8 25 25 C 1.34813 * 125.83434 * 179.97438 * 2 1 3 26 26 S 1.71195 * 126.29759 * 0.06361 * 25 2 1 27 27 H 1.08995 * 109.47308 * 270.00151 * 1 2 3 28 28 H 1.08998 * 109.47148 * 30.00499 * 1 2 3 29 29 H 1.09002 * 109.46355 * 150.00474 * 1 2 3 30 30 H 1.08993 * 109.47491 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47176 * 149.69491 * 9 8 7 32 32 H 1.09003 * 109.47116 * 29.68866 * 9 8 7 33 33 H 1.08997 * 109.49355 * 63.21813 * 11 10 9 34 34 H 1.09004 * 109.48943 * 303.15264 * 11 10 9 35 35 H 1.09002 * 109.48707 * 181.63135 * 12 11 10 36 36 H 1.09002 * 109.48655 * 61.56567 * 12 11 10 37 37 H 1.09003 * 109.47063 * 289.99903 * 14 13 12 38 38 H 1.09002 * 109.47208 * 50.00081 * 14 13 12 39 39 H 0.96999 * 120.00715 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.49355 * 60.64341 * 23 13 12 41 41 H 1.09004 * 109.48943 * 180.70890 * 23 13 12 42 42 H 1.09002 * 109.48908 * 56.84799 * 24 10 9 43 43 H 1.09002 * 109.49369 * 296.77670 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2688 1.1134 0.0000 4 6 1.7884 2.5418 -0.0010 5 9 1.0153 2.7730 -1.1440 6 9 1.0138 2.7742 1.1407 7 7 3.5064 0.7352 0.0066 8 7 3.5344 -0.6662 0.0009 9 6 4.7314 -1.5109 0.0015 10 7 5.1319 -1.7935 -1.3834 11 6 5.5729 -0.5684 -2.0645 12 6 5.9049 -0.8904 -3.5236 13 7 6.9517 -1.9207 -3.5690 14 6 7.3523 -2.2034 -4.9538 15 6 8.5835 -3.0723 -4.9532 16 1 9.0246 -3.3831 -4.0177 17 6 9.1474 -3.4697 -6.1470 18 7 8.6106 -3.0908 -7.2862 19 14 10.6733 -4.5474 -6.1462 20 1 10.3777 -5.8234 -5.4467 21 1 11.0782 -4.8330 -7.5461 22 1 11.7766 -3.8426 -5.4452 23 6 6.5108 -3.1459 -2.8878 24 6 6.1788 -2.8239 -1.4288 25 6 2.2543 -1.0929 0.0005 26 16 1.7290 -2.7223 -0.0003 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3632 -0.8901 -0.5138 30 1 2.6465 3.2138 -0.0012 31 1 4.5149 -2.4474 0.5154 32 1 5.5412 -0.9930 0.5155 33 1 6.4600 -0.1753 -1.5680 34 1 4.7762 0.1747 -2.0283 35 1 6.2598 0.0110 -4.0232 36 1 5.0108 -1.2578 -4.0273 37 1 6.5424 -2.7212 -5.4678 38 1 7.5687 -1.2669 -5.4678 39 1 9.0071 -3.3706 -8.1261 40 1 5.6237 -3.5390 -3.3844 41 1 7.3074 -3.8890 -2.9240 42 1 5.8238 -3.7253 -0.9292 43 1 7.0728 -2.4565 -0.9250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329734943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:29 Heat of formation + Delta-G solvation = 2.423721 kcal Electronic energy + Delta-G solvation = -28702.534919 eV Core-core repulsion = 24388.776237 eV Total energy + Delta-G solvation = -4313.758682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.42647 -48.40754 -44.07590 -40.34148 -37.58813 -36.07393 -34.79897 -34.13501 -31.98983 -30.73391 -29.10768 -28.89901 -27.22741 -25.72700 -24.61256 -24.20932 -23.20402 -22.96131 -20.79303 -19.63252 -18.91353 -18.90359 -18.49629 -18.27121 -18.04736 -17.51129 -17.24973 -16.93482 -16.49327 -16.02537 -15.88911 -15.37223 -15.32055 -15.18111 -15.00732 -14.72782 -14.40828 -14.38396 -14.14457 -14.08421 -13.63342 -13.44311 -13.20181 -13.10581 -12.83739 -12.72040 -12.61464 -12.55769 -12.41360 -12.30402 -12.21422 -12.05750 -11.81857 -11.51115 -11.25024 -10.62631 -9.64242 -9.13515 -9.09291 -8.96544 -8.21781 -6.32682 -0.32430 -0.03876 0.03132 0.75967 1.08610 1.41560 1.44960 1.52717 2.05728 2.39616 2.62828 2.75012 2.83153 3.10295 3.21283 3.33539 3.51881 3.54550 3.76581 3.89935 4.00051 4.07417 4.17213 4.25253 4.29711 4.32734 4.40236 4.53220 4.57568 4.63396 4.73080 4.84571 4.92721 4.97571 4.99511 5.18452 5.21806 5.58830 5.62577 5.74637 5.80643 6.01247 6.25313 6.54149 6.82738 7.37357 8.89632 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.002426 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.281027 B =11537.276619 C =12228.904042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.478 5.478 3 C 0.199 3.801 4 C 0.373 3.627 5 F -0.181 7.181 6 F -0.177 7.177 7 N -0.237 5.237 8 N -0.361 5.361 9 C 0.312 3.688 10 N -0.565 5.565 11 C 0.079 3.921 12 C 0.058 3.942 13 N -0.537 5.537 14 C 0.210 3.790 15 C -0.524 4.524 16 H 0.068 0.932 17 C 0.000 4.000 18 N -0.937 5.937 19 Si 0.972 3.028 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.265 1.265 23 C 0.069 3.931 24 C 0.082 3.918 25 C 0.477 3.523 26 S -0.627 6.627 27 H 0.111 0.889 28 H 0.120 0.880 29 H 0.103 0.897 30 H 0.204 0.796 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.008 0.992 37 H -0.045 1.045 38 H 0.004 0.996 39 H 0.265 0.735 40 H 0.009 0.991 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.160 15.171 20.896 29.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.177 5.177 3 C -0.083 4.083 4 C 0.317 3.683 5 F -0.162 7.162 6 F -0.158 7.158 7 N -0.058 5.058 8 N -0.154 5.154 9 C 0.104 3.896 10 N -0.292 5.292 11 C -0.049 4.049 12 C -0.070 4.070 13 N -0.262 5.262 14 C 0.083 3.917 15 C -0.562 4.562 16 H 0.086 0.914 17 C -0.198 4.198 18 N -0.577 5.577 19 Si 0.796 3.204 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.190 1.190 23 C -0.060 4.060 24 C -0.046 4.046 25 C 0.114 3.886 26 S -0.500 6.500 27 H 0.129 0.871 28 H 0.138 0.862 29 H 0.121 0.879 30 H 0.221 0.779 31 H 0.151 0.849 32 H 0.127 0.873 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.027 0.973 37 H -0.027 1.027 38 H 0.022 0.978 39 H 0.073 0.927 40 H 0.027 0.973 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.441 14.481 20.722 29.114 hybrid contribution -0.130 -0.243 -0.990 1.028 sum -14.572 14.238 19.732 28.362 Atomic orbital electron populations 1.22671 0.70142 1.07287 1.06819 1.46277 1.11176 1.02792 1.57449 1.25975 0.87134 0.94057 1.01155 1.20114 0.90590 0.85692 0.71936 1.93120 1.77920 1.94432 1.50693 1.93125 1.77797 1.94424 1.50421 1.77116 1.16878 0.91797 1.20018 1.49652 1.06158 1.02494 1.57065 1.22452 0.81814 0.94432 0.90946 1.61854 1.41677 1.10779 1.14878 1.22012 0.99066 0.90769 0.93065 1.22090 0.92362 0.95973 0.96621 1.62275 1.36683 1.09479 1.17766 1.19339 0.93892 0.94572 0.83849 1.21417 1.11208 1.30688 0.92852 0.91375 1.25962 1.01011 0.97860 0.94938 1.70088 1.42443 1.47104 0.98084 0.85399 0.78897 0.79021 0.77091 1.19118 1.21053 1.19008 1.21992 0.97786 0.92518 0.93686 1.22048 0.91906 0.94639 0.95967 1.23594 0.84043 0.93696 0.87237 1.93620 1.83735 0.97145 1.75510 0.87108 0.86201 0.87885 0.77923 0.84906 0.87349 0.92471 0.90627 0.90806 0.97336 1.02742 0.97813 0.92674 0.97303 0.90271 0.87938 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 10.69 127.77 1.37 2.13 16 2 N -0.48 -8.15 3.14 -539.81 -1.69 -9.85 16 3 C 0.20 2.63 7.42 137.70 1.02 3.65 16 4 C 0.37 1.96 5.35 71.24 0.38 2.34 16 5 F -0.18 -1.49 16.38 44.97 0.74 -0.75 16 6 F -0.18 -1.14 17.30 44.97 0.78 -0.36 16 7 N -0.24 -3.99 11.51 -49.61 -0.57 -4.56 16 8 N -0.36 -7.84 3.34 -359.52 -1.20 -9.04 16 9 C 0.31 6.54 5.94 170.80 1.01 7.55 16 10 N -0.56 -15.44 4.85 -908.02 -4.40 -19.84 16 11 C 0.08 2.22 5.51 86.31 0.48 2.69 16 12 C 0.06 2.17 5.61 86.31 0.48 2.66 16 13 N -0.54 -23.43 4.70 -900.26 -4.23 -27.66 16 14 C 0.21 11.44 4.72 85.56 0.40 11.85 16 15 C -0.52 -29.69 8.47 25.60 0.22 -29.47 16 16 H 0.07 3.71 7.13 -2.91 -0.02 3.69 16 17 C 0.00 0.02 5.46 84.66 0.46 0.48 16 18 N -0.94 -57.18 13.29 21.45 0.28 -56.89 16 19 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 C 0.07 2.69 5.43 86.31 0.47 3.15 16 24 C 0.08 2.29 5.61 86.31 0.48 2.78 16 25 C 0.48 11.57 7.86 178.99 1.41 12.98 16 26 S -0.63 -20.15 29.61 -56.49 -1.67 -21.82 16 27 H 0.11 0.83 8.14 -2.39 -0.02 0.82 16 28 H 0.12 0.74 6.95 -2.39 -0.02 0.72 16 29 H 0.10 1.46 7.64 -2.39 -0.02 1.44 16 30 H 0.20 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.13 2.76 7.58 -2.39 -0.02 2.74 16 32 H 0.11 1.73 8.12 -2.39 -0.02 1.71 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.98 6.71 -2.39 -0.02 1.96 16 35 H 0.07 2.69 8.07 -2.39 -0.02 2.67 16 36 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 37 H -0.05 -2.74 8.12 -2.39 -0.02 -2.76 16 38 H 0.00 0.22 8.03 -2.39 -0.02 0.20 16 39 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.08 3.27 6.79 -2.39 -0.02 3.25 16 42 H 0.10 2.49 8.07 -2.39 -0.02 2.47 16 43 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -78.25 373.40 -0.73 -78.99 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 1.03 Total: 2.79 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 8.19 Total: 22.78 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -11.82 Total: -127.85 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 1.51 Total: -1.11 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -20.15 SS G_CDS: -1.67 Total: -21.82 kcal Total: -78.25 -0.73 -78.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329734943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.409 kcal (2) G-P(sol) polarization free energy of solvation -78.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds