Wall clock time and date at job start Wed Apr 1 2020 04:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 120.00170 * 2 1 4 4 C 1.53002 * 109.47127 * 269.99848 * 3 2 1 5 5 H 1.09002 * 109.47000 * 59.99998 * 4 3 2 6 6 O 1.42897 * 109.46888 * 300.00013 * 4 3 2 7 7 C 1.52987 * 109.46930 * 179.97438 * 4 3 2 8 8 N 1.46503 * 109.47055 * 185.00037 * 7 4 3 9 9 C 1.36937 * 120.00093 * 179.97438 * 8 7 4 10 10 H 1.07994 * 120.00200 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00137 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00088 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00211 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46939 * 90.00560 * 13 11 9 15 15 H 1.48504 * 109.47381 * 210.00114 * 13 11 9 16 16 H 1.48500 * 109.47417 * 330.00627 * 13 11 9 17 17 C 1.34780 * 120.00007 * 179.97438 * 2 1 3 18 18 O 1.21558 * 120.00099 * 184.91012 * 17 2 1 19 19 C 1.47769 * 120.00011 * 4.91278 * 17 2 1 20 20 C 1.40600 * 120.27052 * 141.11294 * 19 17 2 21 21 N 1.30797 * 121.53650 * 179.72127 * 20 19 17 22 22 C 1.33796 * 121.71851 * 0.28375 * 21 20 19 23 23 C 1.40744 * 120.83218 * 179.97438 * 22 21 20 24 24 F 1.35105 * 120.11711 * 0.05386 * 23 22 21 25 25 C 1.36336 * 119.76676 * 180.13532 * 23 22 21 26 26 C 1.39301 * 121.06321 * 359.91005 * 25 23 22 27 27 C 1.36150 * 120.86202 * 0.04611 * 26 25 23 28 28 C 1.40546 * 119.67083 * 359.97438 * 27 26 25 29 29 C 1.39002 * 120.26999 * 321.34794 * 19 17 2 30 30 H 1.08992 * 109.47240 * 265.19579 * 1 2 3 31 31 H 1.08998 * 109.46744 * 25.20317 * 1 2 3 32 32 H 1.09005 * 109.46919 * 145.19556 * 1 2 3 33 33 H 1.08998 * 109.46780 * 30.00140 * 3 2 1 34 34 H 1.08994 * 109.46854 * 149.99868 * 3 2 1 35 35 H 0.96701 * 114.00262 * 299.99687 * 6 4 3 36 36 H 1.09006 * 109.47629 * 305.00045 * 7 4 3 37 37 H 1.09004 * 109.47586 * 65.00406 * 7 4 3 38 38 H 0.97000 * 119.99821 * 0.02562 * 8 7 4 39 39 H 0.96997 * 120.00189 * 180.02562 * 12 11 9 40 40 H 1.07998 * 119.23226 * 0.02562 * 20 19 17 41 41 H 1.07999 * 119.46637 * 179.97438 * 25 23 22 42 42 H 1.07999 * 119.57097 * 180.02562 * 26 25 23 43 43 H 1.07995 * 120.16404 * 180.02562 * 27 26 25 44 44 H 1.08000 * 121.02053 * 0.02988 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5002 1.8407 -1.9564 6 8 3.2249 0.7144 -2.1161 7 6 3.2171 3.0356 -1.4425 8 7 3.3570 3.5187 -2.8185 9 6 4.0104 4.6960 -3.0677 10 1 4.4229 5.2683 -2.2500 11 6 4.1435 5.1535 -4.3715 12 7 3.6412 4.4558 -5.3682 13 14 5.0354 6.7591 -4.7115 14 1 6.4800 6.4877 -4.9229 15 1 4.4675 7.3928 -5.9287 16 1 4.8678 7.6734 -3.5534 17 6 2.1389 -1.1672 0.0005 18 8 3.3512 -1.1691 0.0906 19 6 1.4042 -2.4446 -0.1085 20 6 1.9254 -3.4985 -0.8796 21 7 1.2986 -4.6413 -0.9889 22 6 0.1290 -4.8633 -0.3781 23 6 -0.5297 -6.1002 -0.5089 24 9 0.0168 -7.0835 -1.2571 25 6 -1.7220 -6.3020 0.1208 26 6 -2.3031 -5.3020 0.8972 27 6 -1.6954 -4.0930 1.0479 28 6 -0.4655 -3.8486 0.4133 29 6 0.1897 -2.6125 0.5465 30 1 -0.3633 -0.0861 1.0240 31 1 -0.3633 0.9298 -0.4376 32 1 -0.3633 -0.8439 -0.5866 33 1 1.6085 2.0283 0.5139 34 1 3.1499 1.1383 0.5138 35 1 4.0874 0.5459 -1.7125 36 1 2.6693 3.7711 -0.8531 37 1 4.2054 2.8850 -1.0080 38 1 2.9862 3.0049 -3.5529 39 1 3.7345 4.7753 -6.2793 40 1 2.8676 -3.3629 -1.3898 41 1 -2.2234 -7.2529 0.0168 42 1 -3.2482 -5.4881 1.3857 43 1 -2.1559 -3.3259 1.6528 44 1 -0.2359 -1.8184 1.1420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332544779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:33 Heat of formation + Delta-G solvation = -44.786463 kcal Electronic energy + Delta-G solvation = -29461.239723 eV Core-core repulsion = 25101.157456 eV Total energy + Delta-G solvation = -4360.082266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.22308 -41.45424 -39.93261 -37.64346 -37.08423 -35.63292 -34.04510 -33.72806 -31.50574 -31.19484 -30.40024 -29.28308 -27.31431 -25.97944 -24.85808 -24.33159 -22.82089 -22.47815 -21.23870 -20.36339 -19.01439 -18.09508 -17.75951 -17.16122 -16.94617 -16.74928 -16.15126 -16.04054 -15.87284 -15.38838 -15.17911 -15.04147 -14.67908 -14.42336 -14.27174 -13.96030 -13.79515 -13.61490 -13.44484 -13.12034 -12.93437 -12.75084 -12.57006 -12.39999 -12.18836 -12.13334 -11.91214 -11.57492 -10.94709 -10.83927 -10.81013 -10.68331 -10.43290 -10.16383 -9.90865 -9.77688 -9.64524 -9.38657 -8.89459 -8.66498 -8.63915 -6.92066 -5.74599 -3.04244 -0.32006 0.10652 1.24762 2.13803 2.54642 2.84474 3.44204 3.47093 3.48793 3.50458 3.50797 3.73154 4.01242 4.12333 4.26261 4.27991 4.43172 4.55560 4.57442 4.75786 4.80863 4.86854 4.94526 4.99304 5.08959 5.17918 5.24087 5.35556 5.40858 5.49489 5.52344 5.55195 5.62221 5.68429 5.75001 5.91264 5.95953 6.17298 6.24309 6.32661 6.50482 6.71340 7.07951 7.36884 7.69072 7.91427 8.14641 8.43533 9.54844 10.12528 10.47940 11.47763 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.022730 B = 0.001967 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.541350 B =14230.629163 C =14603.740346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.600 5.600 3 C 0.084 3.916 4 C 0.086 3.914 5 H 0.096 0.904 6 O -0.549 6.549 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.070 0.930 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.569 3.431 18 O -0.521 6.521 19 C -0.165 4.165 20 C 0.187 3.813 21 N -0.466 5.466 22 C 0.108 3.892 23 C 0.125 3.875 24 F -0.121 7.121 25 C -0.135 4.135 26 C -0.095 4.095 27 C -0.098 4.098 28 C -0.088 4.088 29 C -0.032 4.032 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.375 0.625 36 H 0.025 0.975 37 H 0.022 0.978 38 H 0.388 0.612 39 H 0.255 0.745 40 H 0.175 0.825 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.081 -20.086 17.982 31.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.332 5.332 3 C -0.039 4.039 4 C 0.025 3.975 5 H 0.114 0.886 6 O -0.354 6.354 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.356 3.644 18 O -0.397 6.397 19 C -0.170 4.170 20 C 0.013 3.987 21 N -0.173 5.173 22 C -0.014 4.014 23 C 0.104 3.896 24 F -0.099 7.099 25 C -0.156 4.156 26 C -0.113 4.113 27 C -0.117 4.117 28 C -0.090 4.090 29 C -0.058 4.058 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.222 0.778 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.223 0.777 39 H 0.065 0.935 40 H 0.192 0.808 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.566 -20.724 17.135 31.071 hybrid contribution 0.469 1.342 0.190 1.435 sum -15.097 -19.381 17.325 30.062 Atomic orbital electron populations 1.22196 0.79774 1.04347 1.01237 1.47566 1.06824 1.05906 1.72937 1.22360 0.98495 0.84028 0.99045 1.22498 0.95828 0.88421 0.90764 0.88589 1.86550 1.33078 1.58877 1.56857 1.21230 0.96826 0.92363 0.89819 1.42247 1.68103 1.25273 1.01387 1.19214 1.28247 0.97777 0.92178 0.91249 1.24769 1.01485 0.99068 0.95633 1.69680 1.50229 1.39267 0.98622 0.86181 0.79368 0.83202 0.77352 1.21678 1.21758 1.20786 1.17877 0.86962 0.82892 0.76633 1.90794 1.13161 1.86838 1.48911 1.21080 0.96593 0.97029 1.02290 1.23114 0.98100 0.85698 0.91744 1.68048 1.06936 1.22333 1.19965 1.18981 0.92796 0.93359 0.96285 1.17169 0.93022 0.84628 0.94745 1.91550 1.85401 1.59363 1.73581 1.20969 0.94439 1.01677 0.98491 1.20724 1.00289 0.92461 0.97796 1.21074 0.93550 0.98073 0.99022 1.18573 0.96791 0.94167 0.99498 1.22349 0.92123 0.95994 0.95322 0.92170 0.90015 0.90775 0.89243 0.89003 0.77801 0.95766 0.96034 0.77746 0.93482 0.80770 0.83824 0.84246 0.84235 0.82469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 8.87 59.85 0.53 1.00 16 2 N -0.60 -6.47 2.83 -182.72 -0.52 -6.98 16 3 C 0.08 0.99 5.15 -4.04 -0.02 0.97 16 4 C 0.09 1.36 3.27 -26.74 -0.09 1.28 16 5 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 6 O -0.55 -9.95 12.20 -37.16 -0.45 -10.41 16 7 C 0.13 2.46 5.90 -4.05 -0.02 2.44 16 8 N -0.73 -18.68 5.55 -59.91 -0.33 -19.02 16 9 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 10 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 11 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 12 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 13 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C 0.57 7.18 6.80 -12.36 -0.08 7.10 16 18 O -0.52 -8.18 15.60 3.39 0.05 -8.13 16 19 C -0.16 -1.79 5.27 -104.83 -0.55 -2.34 16 20 C 0.19 2.25 10.76 -17.10 -0.18 2.07 16 21 N -0.47 -5.99 10.17 -10.63 -0.11 -6.10 16 22 C 0.11 1.19 6.61 -84.72 -0.56 0.63 16 23 C 0.12 1.23 7.30 -39.32 -0.29 0.95 16 24 F -0.12 -1.39 17.11 2.25 0.04 -1.35 16 25 C -0.14 -0.87 9.91 -39.87 -0.40 -1.26 16 26 C -0.09 -0.45 9.95 -39.94 -0.40 -0.84 16 27 C -0.10 -0.52 9.77 -39.46 -0.39 -0.91 16 28 C -0.09 -0.74 5.74 -106.82 -0.61 -1.35 16 29 C -0.03 -0.25 7.43 -38.43 -0.29 -0.54 16 30 H 0.06 0.25 6.88 -51.93 -0.36 -0.10 16 31 H 0.08 0.54 8.04 -51.93 -0.42 0.13 16 32 H 0.07 0.51 5.82 -51.93 -0.30 0.21 16 33 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.09 1.16 7.36 -51.93 -0.38 0.78 16 35 H 0.37 6.34 8.61 45.56 0.39 6.73 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.39 10.81 7.67 -40.82 -0.31 10.49 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.18 2.03 8.04 -52.49 -0.42 1.61 16 41 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.14 0.24 8.06 -52.49 -0.42 -0.18 16 43 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 44 H 0.16 0.76 5.30 -52.49 -0.28 0.48 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -36.44 376.16 -8.12 -44.57 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -4.58 Total: 10.51 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -3.59 Total: 1.67 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.23 Total: -60.14 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.40 Total: -18.54 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.44 -8.12 -44.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332544779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.220 kcal (2) G-P(sol) polarization free energy of solvation -36.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds