Wall clock time and date at job start Wed Apr 1 2020 04:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 120.00170 * 2 1 4 4 C 1.53002 * 109.47127 * 269.99848 * 3 2 1 5 5 H 1.09002 * 109.47000 * 59.99998 * 4 3 2 6 6 O 1.42897 * 109.46888 * 300.00013 * 4 3 2 7 7 C 1.52987 * 109.46930 * 179.97438 * 4 3 2 8 8 N 1.46503 * 109.47055 * 185.00037 * 7 4 3 9 9 C 1.36937 * 120.00093 * 179.97438 * 8 7 4 10 10 H 1.07994 * 120.00200 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00137 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00088 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00211 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46939 * 90.00560 * 13 11 9 15 15 H 1.48504 * 109.47381 * 210.00114 * 13 11 9 16 16 H 1.48500 * 109.47417 * 330.00627 * 13 11 9 17 17 C 1.34780 * 120.00007 * 179.97438 * 2 1 3 18 18 O 1.21558 * 120.00099 * 184.91012 * 17 2 1 19 19 C 1.47769 * 120.00011 * 4.91278 * 17 2 1 20 20 C 1.40600 * 120.27052 * 141.11294 * 19 17 2 21 21 N 1.30797 * 121.53650 * 179.72127 * 20 19 17 22 22 C 1.33796 * 121.71851 * 0.28375 * 21 20 19 23 23 C 1.40744 * 120.83218 * 179.97438 * 22 21 20 24 24 F 1.35105 * 120.11711 * 0.05386 * 23 22 21 25 25 C 1.36336 * 119.76676 * 180.13532 * 23 22 21 26 26 C 1.39301 * 121.06321 * 359.91005 * 25 23 22 27 27 C 1.36150 * 120.86202 * 0.04611 * 26 25 23 28 28 C 1.40546 * 119.67083 * 359.97438 * 27 26 25 29 29 C 1.39002 * 120.26999 * 321.34794 * 19 17 2 30 30 H 1.08992 * 109.47240 * 265.19579 * 1 2 3 31 31 H 1.08998 * 109.46744 * 25.20317 * 1 2 3 32 32 H 1.09005 * 109.46919 * 145.19556 * 1 2 3 33 33 H 1.08998 * 109.46780 * 30.00140 * 3 2 1 34 34 H 1.08994 * 109.46854 * 149.99868 * 3 2 1 35 35 H 0.96701 * 114.00262 * 299.99687 * 6 4 3 36 36 H 1.09006 * 109.47629 * 305.00045 * 7 4 3 37 37 H 1.09004 * 109.47586 * 65.00406 * 7 4 3 38 38 H 0.97000 * 119.99821 * 0.02562 * 8 7 4 39 39 H 0.96997 * 120.00189 * 180.02562 * 12 11 9 40 40 H 1.07998 * 119.23226 * 0.02562 * 20 19 17 41 41 H 1.07999 * 119.46637 * 179.97438 * 25 23 22 42 42 H 1.07999 * 119.57097 * 180.02562 * 26 25 23 43 43 H 1.07995 * 120.16404 * 180.02562 * 27 26 25 44 44 H 1.08000 * 121.02053 * 0.02988 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5002 1.8407 -1.9564 6 8 3.2249 0.7144 -2.1161 7 6 3.2171 3.0356 -1.4425 8 7 3.3570 3.5187 -2.8185 9 6 4.0104 4.6960 -3.0677 10 1 4.4229 5.2683 -2.2500 11 6 4.1435 5.1535 -4.3715 12 7 3.6412 4.4558 -5.3682 13 14 5.0354 6.7591 -4.7115 14 1 6.4800 6.4877 -4.9229 15 1 4.4675 7.3928 -5.9287 16 1 4.8678 7.6734 -3.5534 17 6 2.1389 -1.1672 0.0005 18 8 3.3512 -1.1691 0.0906 19 6 1.4042 -2.4446 -0.1085 20 6 1.9254 -3.4985 -0.8796 21 7 1.2986 -4.6413 -0.9889 22 6 0.1290 -4.8633 -0.3781 23 6 -0.5297 -6.1002 -0.5089 24 9 0.0168 -7.0835 -1.2571 25 6 -1.7220 -6.3020 0.1208 26 6 -2.3031 -5.3020 0.8972 27 6 -1.6954 -4.0930 1.0479 28 6 -0.4655 -3.8486 0.4133 29 6 0.1897 -2.6125 0.5465 30 1 -0.3633 -0.0861 1.0240 31 1 -0.3633 0.9298 -0.4376 32 1 -0.3633 -0.8439 -0.5866 33 1 1.6085 2.0283 0.5139 34 1 3.1499 1.1383 0.5138 35 1 4.0874 0.5459 -1.7125 36 1 2.6693 3.7711 -0.8531 37 1 4.2054 2.8850 -1.0080 38 1 2.9862 3.0049 -3.5529 39 1 3.7345 4.7753 -6.2793 40 1 2.8676 -3.3629 -1.3898 41 1 -2.2234 -7.2529 0.0168 42 1 -3.2482 -5.4881 1.3857 43 1 -2.1559 -3.3259 1.6528 44 1 -0.2359 -1.8184 1.1420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332544779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:32 Heat of formation + Delta-G solvation = -72.587338 kcal Electronic energy + Delta-G solvation = -29462.445259 eV Core-core repulsion = 25101.157456 eV Total energy + Delta-G solvation = -4361.287803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.94464 -42.17394 -40.79775 -38.77354 -37.91478 -36.62291 -35.91264 -34.49571 -33.20872 -32.06910 -31.17469 -30.45464 -28.14833 -27.27073 -25.67024 -25.33159 -24.28373 -23.15928 -22.67874 -21.20005 -19.71003 -19.23861 -18.76853 -18.51274 -17.88727 -17.68938 -17.02490 -16.89543 -16.62681 -16.49922 -16.43530 -16.21187 -15.73094 -15.43344 -15.38250 -14.99555 -14.80768 -14.66005 -14.39932 -14.18525 -14.14328 -13.80606 -13.68325 -13.17227 -13.06947 -12.95533 -12.77562 -12.76421 -12.63857 -12.48644 -12.16876 -12.04305 -11.82468 -11.49505 -11.33157 -11.08779 -10.97807 -10.64937 -10.05237 -9.61826 -9.23319 -9.01925 -7.95442 -5.25359 -0.92926 -0.56416 0.63430 1.39732 1.46043 1.48862 1.57035 1.73615 2.08779 2.55075 2.82783 2.87557 3.07298 3.28390 3.36395 3.50831 3.59947 3.65072 3.68923 3.77132 3.86420 4.07625 4.12314 4.17785 4.26420 4.35996 4.37027 4.46299 4.52474 4.57156 4.65196 4.76810 4.82104 4.88867 4.93308 4.99261 5.09534 5.23879 5.25496 5.28873 5.40909 5.47570 5.72325 6.24169 6.25352 6.62197 6.78589 7.02266 7.31638 8.08340 8.30390 9.28042 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.022730 B = 0.001967 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.541350 B =14230.629163 C =14603.740346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.597 5.597 3 C 0.095 3.905 4 C 0.093 3.907 5 H 0.091 0.909 6 O -0.569 6.569 7 C 0.124 3.876 8 N -0.742 5.742 9 C -0.246 4.246 10 H 0.079 0.921 11 C -0.080 4.080 12 N -0.971 5.971 13 Si 0.977 3.023 14 H -0.289 1.289 15 H -0.295 1.295 16 H -0.265 1.265 17 C 0.567 3.433 18 O -0.565 6.565 19 C -0.189 4.189 20 C 0.169 3.831 21 N -0.504 5.504 22 C 0.082 3.918 23 C 0.074 3.926 24 F -0.144 7.144 25 C -0.110 4.110 26 C -0.090 4.090 27 C -0.081 4.081 28 C -0.100 4.100 29 C -0.001 4.001 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.376 0.624 36 H 0.045 0.955 37 H 0.022 0.978 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.158 0.842 41 H 0.168 0.832 42 H 0.184 0.816 43 H 0.185 0.815 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.615 -19.227 21.379 34.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.328 5.328 3 C -0.028 4.028 4 C 0.033 3.967 5 H 0.109 0.891 6 O -0.375 6.375 7 C -0.004 4.004 8 N -0.385 5.385 9 C -0.378 4.378 10 H 0.097 0.903 11 C -0.272 4.272 12 N -0.622 5.622 13 Si 0.806 3.194 14 H -0.217 1.217 15 H -0.222 1.222 16 H -0.189 1.189 17 C 0.355 3.645 18 O -0.445 6.445 19 C -0.194 4.194 20 C -0.004 4.004 21 N -0.212 5.212 22 C -0.040 4.040 23 C 0.054 3.946 24 F -0.122 7.122 25 C -0.130 4.130 26 C -0.107 4.107 27 C -0.099 4.099 28 C -0.102 4.102 29 C -0.027 4.027 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.143 0.857 34 H 0.101 0.899 35 H 0.224 0.776 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.205 0.795 39 H 0.059 0.941 40 H 0.175 0.825 41 H 0.185 0.815 42 H 0.201 0.799 43 H 0.202 0.798 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -19.136 -19.860 20.593 34.420 hybrid contribution 1.396 0.962 -0.758 1.858 sum -17.740 -18.898 19.835 32.638 Atomic orbital electron populations 1.22553 0.77106 1.04919 1.03954 1.47630 1.08468 1.04751 1.71935 1.22156 0.99335 0.85444 0.95872 1.22466 0.94478 0.86356 0.93396 0.89106 1.86526 1.33514 1.59466 1.58014 1.21456 0.97579 0.94528 0.86816 1.42487 1.67837 1.24681 1.03475 1.19678 1.27209 0.98418 0.92487 0.90298 1.25660 1.03134 1.02809 0.95625 1.69854 1.52345 1.41253 0.98724 0.85085 0.77689 0.79306 0.77334 1.21670 1.22171 1.18920 1.18172 0.86581 0.83866 0.75887 1.90759 1.15129 1.87541 1.51046 1.20851 0.98307 0.95909 1.04320 1.22946 0.98059 0.86563 0.92869 1.67948 1.08639 1.22858 1.21735 1.19411 0.92613 0.94833 0.97142 1.17620 0.95050 0.84538 0.97377 1.91480 1.86057 1.60114 1.74578 1.21436 0.92421 1.03129 0.96061 1.21272 1.01420 0.91424 0.96602 1.21607 0.91525 0.99310 0.97474 1.18867 0.98186 0.93541 0.99585 1.22748 0.90178 0.96528 0.93263 0.88024 0.89264 0.90669 0.85676 0.89852 0.77577 0.93730 0.96030 0.79520 0.94069 0.82527 0.81493 0.79917 0.79807 0.78503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 8.87 127.77 1.13 1.70 16 2 N -0.60 -11.79 2.83 -850.28 -2.40 -14.19 16 3 C 0.10 2.10 5.15 86.38 0.44 2.54 16 4 C 0.09 2.94 3.27 30.59 0.10 3.04 16 5 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 6 O -0.57 -21.48 12.20 -147.14 -1.80 -23.27 16 7 C 0.12 4.74 5.90 86.37 0.51 5.25 16 8 N -0.74 -38.62 5.55 -343.46 -1.91 -40.53 16 9 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 10 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 11 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 12 N -0.97 -61.50 13.06 21.65 0.28 -61.22 16 13 Si 0.98 46.87 29.55 68.60 2.03 48.89 16 14 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 15 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 16 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 17 C 0.57 14.38 6.80 86.76 0.59 14.97 16 18 O -0.57 -18.72 15.60 -2.06 -0.03 -18.75 16 19 C -0.19 -4.14 5.27 -20.00 -0.11 -4.25 16 20 C 0.17 4.55 10.76 85.42 0.92 5.47 16 21 N -0.50 -14.28 10.17 -187.54 -1.91 -16.19 16 22 C 0.08 1.85 6.61 40.33 0.27 2.11 16 23 C 0.07 1.48 7.30 22.44 0.16 1.65 16 24 F -0.14 -3.60 17.11 44.97 0.77 -2.83 16 25 C -0.11 -1.12 9.91 22.08 0.22 -0.90 16 26 C -0.09 -0.38 9.95 22.04 0.22 -0.16 16 27 C -0.08 -0.43 9.77 22.35 0.22 -0.21 16 28 C -0.10 -1.43 5.74 -21.29 -0.12 -1.55 16 29 C 0.00 -0.02 7.43 23.01 0.17 0.15 16 30 H 0.10 0.23 6.88 -2.39 -0.02 0.22 16 31 H 0.09 0.83 8.04 -2.39 -0.02 0.82 16 32 H 0.07 0.79 5.82 -2.38 -0.01 0.77 16 33 H 0.13 1.88 8.07 -2.39 -0.02 1.86 16 34 H 0.08 2.03 7.36 -2.39 -0.02 2.01 16 35 H 0.38 13.53 8.61 -74.06 -0.64 12.89 16 36 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.37 21.37 7.67 -92.71 -0.71 20.66 16 39 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.16 4.42 8.04 -2.91 -0.02 4.40 16 41 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 42 H 0.18 -0.70 8.06 -2.91 -0.02 -0.72 16 43 H 0.18 -0.60 8.06 -2.91 -0.02 -0.62 16 44 H 0.20 0.84 5.30 -2.91 -0.02 0.82 16 Total: -1.00 -86.07 376.16 0.79 -85.28 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -0.28 Total: 30.39 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 6.03 Total: 12.41 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -5.93 Total: -132.13 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.83 Total: -42.02 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.77 Total: -2.83 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -86.07 0.79 -85.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332544779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.692 kcal (2) G-P(sol) polarization free energy of solvation -86.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds