Wall clock time and date at job start Wed Apr 1 2020 04:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00271 * 2 1 4 4 C 1.53000 * 109.46866 * 269.99772 * 3 2 1 5 5 H 1.09000 * 109.47522 * 305.00197 * 4 3 2 6 6 O 1.42905 * 109.47217 * 65.00014 * 4 3 2 7 7 C 1.52999 * 109.47441 * 184.99817 * 4 3 2 8 8 N 1.46496 * 109.47566 * 179.97438 * 7 4 3 9 9 C 1.36936 * 120.00283 * 179.72475 * 8 7 4 10 10 H 1.07996 * 119.99704 * 0.27842 * 9 8 7 11 11 C 1.38809 * 120.00014 * 180.27644 * 9 8 7 12 12 N 1.31626 * 119.99909 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00299 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46914 * 90.00025 * 13 11 9 15 15 H 1.48497 * 109.47160 * 210.00122 * 13 11 9 16 16 H 1.48496 * 109.46856 * 330.00135 * 13 11 9 17 17 C 1.34776 * 119.99952 * 179.97438 * 2 1 3 18 18 O 1.21564 * 120.00323 * 175.48268 * 17 2 1 19 19 C 1.47766 * 119.99971 * 355.48323 * 17 2 1 20 20 C 1.40609 * 120.27296 * 41.42180 * 19 17 2 21 21 N 1.30785 * 121.53646 * 179.97438 * 20 19 17 22 22 C 1.33793 * 121.72124 * 0.02663 * 21 20 19 23 23 C 1.40755 * 120.82670 * 179.97438 * 22 21 20 24 24 F 1.35101 * 120.11435 * 0.02562 * 23 22 21 25 25 C 1.36327 * 119.76632 * 180.02562 * 23 22 21 26 26 C 1.39296 * 121.06244 * 0.02562 * 25 23 22 27 27 C 1.36149 * 120.86811 * 359.97438 * 26 25 23 28 28 C 1.40549 * 119.66806 * 359.97438 * 27 26 25 29 29 C 1.39000 * 120.27036 * 221.14860 * 19 17 2 30 30 H 1.09001 * 109.47198 * 95.16898 * 1 2 3 31 31 H 1.08995 * 109.47683 * 215.16862 * 1 2 3 32 32 H 1.09001 * 109.47035 * 335.17199 * 1 2 3 33 33 H 1.08994 * 109.47812 * 149.99804 * 3 2 1 34 34 H 1.09005 * 109.47237 * 29.99313 * 3 2 1 35 35 H 0.96693 * 114.00229 * 59.99896 * 6 4 3 36 36 H 1.08999 * 109.46861 * 60.00061 * 7 4 3 37 37 H 1.09002 * 109.46711 * 299.99970 * 7 4 3 38 38 H 0.97006 * 119.99535 * 0.02562 * 8 7 4 39 39 H 0.96997 * 119.99514 * 179.97438 * 12 11 9 40 40 H 1.08004 * 119.22739 * 359.97438 * 20 19 17 41 41 H 1.07997 * 119.46985 * 180.02562 * 25 23 22 42 42 H 1.08003 * 119.57150 * 179.97438 * 26 25 23 43 43 H 1.07999 * 120.16952 * 180.02562 * 27 26 25 44 44 H 1.07996 * 121.01886 * 359.97438 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 2.9642 0.9129 -1.9816 6 8 1.2061 1.9934 -2.0815 7 6 3.3239 2.9679 -1.4445 8 7 3.5686 3.3904 -2.8257 9 6 4.3246 4.5041 -3.0774 10 1 4.7441 5.0684 -2.2577 11 6 4.5516 4.9076 -4.3859 12 7 5.2787 5.9779 -4.6278 13 14 3.8266 3.9311 -5.8037 14 1 2.4810 4.4646 -6.1352 15 1 4.7120 4.0492 -6.9900 16 1 3.7104 2.5032 -5.4129 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1690 -0.0824 19 6 1.4034 -2.4448 0.1019 20 6 0.2085 -2.6337 -0.6148 21 7 -0.4620 -3.7544 -0.5436 22 6 -0.0462 -4.7760 0.2135 23 6 -0.7829 -5.9737 0.2766 24 9 -1.9255 -6.1048 -0.4324 25 6 -0.3395 -7.0009 1.0556 26 6 0.8354 -6.8868 1.7951 27 6 1.5749 -5.7442 1.7596 28 6 1.1495 -4.6645 0.9668 29 6 1.8903 -3.4719 0.9020 30 1 -0.3633 -0.0926 -1.0235 31 1 -0.3634 -0.8400 0.5919 32 1 -0.3633 0.9327 0.4315 33 1 3.1499 1.1384 0.5138 34 1 1.6084 2.0284 0.5137 35 1 0.6956 2.6948 -1.6544 36 1 4.2746 2.7519 -0.9572 37 1 2.8121 3.7652 -0.9055 38 1 3.1915 2.8836 -3.5619 39 1 5.4376 6.2596 -5.5423 40 1 -0.1643 -1.8346 -1.2385 41 1 -0.9084 -7.9178 1.1001 42 1 1.1642 -7.7156 2.4046 43 1 2.4843 -5.6681 2.3372 44 1 2.8079 -3.3559 1.4595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332544780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:37 Heat of formation + Delta-G solvation = -43.303395 kcal Electronic energy + Delta-G solvation = -29382.795794 eV Core-core repulsion = 25022.777838 eV Total energy + Delta-G solvation = -4360.017956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.29121 -41.51550 -40.03306 -37.80826 -37.36936 -35.52063 -34.16875 -33.80286 -31.85234 -31.33558 -30.35235 -29.73461 -27.23186 -26.34930 -24.80664 -24.43045 -22.61703 -22.47864 -21.31080 -20.46260 -19.05458 -18.37154 -17.73967 -17.65854 -17.18001 -16.62045 -16.37261 -16.14266 -15.93964 -15.46746 -15.39629 -14.80719 -14.75023 -14.46318 -14.37344 -14.01567 -13.82405 -13.68353 -13.47873 -13.31077 -13.09313 -12.84092 -12.70940 -12.45574 -12.28787 -12.15234 -11.92496 -11.69341 -11.23966 -10.95084 -10.90502 -10.82364 -10.61235 -10.21909 -9.99698 -9.85983 -9.57473 -9.43997 -8.90417 -8.79300 -8.66883 -7.22412 -5.75587 -3.11091 -0.35974 0.00416 1.20527 2.03910 2.53191 2.64993 3.36760 3.42833 3.43054 3.49016 3.49495 3.66855 3.95012 4.09533 4.21228 4.23133 4.35069 4.52191 4.55158 4.62926 4.70486 4.81587 4.84852 4.94789 5.00929 5.13821 5.19096 5.30788 5.42804 5.44099 5.49086 5.50068 5.53023 5.61113 5.71070 5.82078 5.83795 5.84773 6.16055 6.19863 6.44652 6.60544 6.99853 7.22975 7.78943 7.84732 8.00800 8.43338 9.23221 9.95610 10.15739 11.42488 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.002059 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.391197 B =13593.403919 C =13935.737433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.599 5.599 3 C 0.088 3.912 4 C 0.081 3.919 5 H 0.102 0.898 6 O -0.554 6.554 7 C 0.131 3.869 8 N -0.749 5.749 9 C -0.246 4.246 10 H 0.089 0.911 11 C 0.005 3.995 12 N -0.934 5.934 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.292 1.292 16 H -0.276 1.276 17 C 0.561 3.439 18 O -0.522 6.522 19 C -0.173 4.173 20 C 0.158 3.842 21 N -0.465 5.465 22 C 0.107 3.893 23 C 0.124 3.876 24 F -0.121 7.121 25 C -0.133 4.133 26 C -0.094 4.094 27 C -0.096 4.096 28 C -0.087 4.087 29 C 0.001 3.999 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.370 0.630 36 H 0.036 0.964 37 H 0.029 0.971 38 H 0.366 0.634 39 H 0.259 0.741 40 H 0.176 0.824 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.498 -26.332 18.551 35.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.331 5.331 3 C -0.035 4.035 4 C 0.020 3.980 5 H 0.120 0.880 6 O -0.359 6.359 7 C 0.003 3.997 8 N -0.395 5.395 9 C -0.376 4.376 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.582 5.582 13 Si 0.717 3.283 14 H -0.210 1.210 15 H -0.218 1.218 16 H -0.202 1.202 17 C 0.347 3.653 18 O -0.398 6.398 19 C -0.178 4.178 20 C -0.015 4.015 21 N -0.172 5.172 22 C -0.015 4.015 23 C 0.103 3.897 24 F -0.099 7.099 25 C -0.154 4.154 26 C -0.112 4.112 27 C -0.114 4.114 28 C -0.089 4.089 29 C -0.025 4.025 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.217 0.783 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.200 0.800 39 H 0.069 0.931 40 H 0.193 0.807 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.360 -26.799 17.671 35.166 hybrid contribution -0.104 0.006 -0.449 0.461 sum -14.464 -26.793 17.222 34.981 Atomic orbital electron populations 1.22143 0.79107 1.03337 1.02376 1.47609 1.07251 1.05651 1.72589 1.22317 0.98560 0.84032 0.98565 1.22621 0.85187 0.98301 0.91842 0.88040 1.86585 1.32418 1.59308 1.57595 1.21184 0.96861 0.92958 0.88740 1.42569 1.63123 1.32512 1.01318 1.19040 1.23727 1.01197 0.93628 0.89300 1.24670 0.99901 0.97562 0.96986 1.69711 1.43225 1.25717 1.19516 0.86497 0.78733 0.80107 0.82916 1.21026 1.21808 1.20248 1.18018 0.86988 0.83155 0.77123 1.90857 1.13194 1.86898 1.48842 1.21011 0.98152 0.96380 1.02235 1.23525 0.89084 0.94562 0.94333 1.67994 1.32074 0.99771 1.17337 1.18947 0.93311 0.93406 0.95818 1.17144 0.84298 0.93296 0.94923 1.91548 1.46401 1.95886 1.76062 1.20981 0.98275 0.98772 0.97370 1.20744 0.93683 0.98298 0.98524 1.21120 1.00301 0.92104 0.97924 1.18588 0.95373 0.95768 0.99181 1.21860 0.97425 0.89548 0.93690 0.91166 0.91384 0.90239 0.88510 0.89526 0.78332 0.94641 0.95341 0.80023 0.93059 0.80745 0.83758 0.84155 0.84091 0.82711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 8.56 59.85 0.51 1.04 16 2 N -0.60 -6.23 2.84 -182.73 -0.52 -6.75 16 3 C 0.09 0.99 5.07 -4.04 -0.02 0.97 16 4 C 0.08 1.21 3.30 -26.73 -0.09 1.12 16 5 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 6 O -0.55 -7.98 12.64 -35.23 -0.45 -8.43 16 7 C 0.13 2.45 5.92 -4.04 -0.02 2.42 16 8 N -0.75 -18.23 5.30 -59.91 -0.32 -18.54 16 9 C -0.25 -7.11 10.47 -15.06 -0.16 -7.26 16 10 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 11 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 12 N -0.93 -29.79 13.97 55.49 0.78 -29.01 16 13 Si 0.89 23.02 27.73 -169.99 -4.71 18.31 16 14 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 16 H -0.28 -6.93 6.52 56.52 0.37 -6.57 16 17 C 0.56 6.88 7.33 -12.37 -0.09 6.79 16 18 O -0.52 -8.31 16.57 5.31 0.09 -8.22 16 19 C -0.17 -1.77 5.16 -104.83 -0.54 -2.31 16 20 C 0.16 1.58 8.77 -17.10 -0.15 1.43 16 21 N -0.46 -5.27 10.17 -10.63 -0.11 -5.38 16 22 C 0.11 1.11 6.61 -84.72 -0.56 0.55 16 23 C 0.12 1.14 7.30 -39.32 -0.29 0.86 16 24 F -0.12 -1.29 17.11 2.25 0.04 -1.25 16 25 C -0.13 -0.81 9.91 -39.88 -0.40 -1.20 16 26 C -0.09 -0.44 9.95 -39.94 -0.40 -0.84 16 27 C -0.10 -0.54 9.77 -39.46 -0.39 -0.93 16 28 C -0.09 -0.74 5.74 -106.82 -0.61 -1.35 16 29 C 0.00 0.01 9.54 -38.43 -0.37 -0.36 16 30 H 0.07 0.50 6.85 -51.93 -0.36 0.15 16 31 H 0.07 0.43 5.99 -51.93 -0.31 0.12 16 32 H 0.08 0.43 7.83 -51.93 -0.41 0.03 16 33 H 0.10 1.18 7.49 -51.93 -0.39 0.79 16 34 H 0.09 0.74 7.86 -51.93 -0.41 0.33 16 35 H 0.37 4.03 9.04 45.56 0.41 4.44 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.37 9.02 5.41 -40.82 -0.22 8.80 16 39 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 40 H 0.18 1.47 5.49 -52.48 -0.29 1.18 16 41 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.14 0.24 8.06 -52.48 -0.42 -0.18 16 43 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 44 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 374.96 15.07 5.65 5.65 Total: -1.00 -37.55 374.96 -7.73 -45.28 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.52 Total: 7.39 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -3.66 Total: 0.96 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.17 Total: -59.68 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.36 Total: -16.66 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.71 Total: 18.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.55 -7.73 -45.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332544780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.980 kcal (2) G-P(sol) polarization free energy of solvation -37.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds