Wall clock time and date at job start Wed Apr 1 2020 04:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00271 * 2 1 4 4 C 1.53000 * 109.46866 * 269.99772 * 3 2 1 5 5 H 1.09000 * 109.47522 * 305.00197 * 4 3 2 6 6 O 1.42905 * 109.47217 * 65.00014 * 4 3 2 7 7 C 1.52999 * 109.47441 * 184.99817 * 4 3 2 8 8 N 1.46496 * 109.47566 * 179.97438 * 7 4 3 9 9 C 1.36936 * 120.00283 * 179.72475 * 8 7 4 10 10 H 1.07996 * 119.99704 * 0.27842 * 9 8 7 11 11 C 1.38809 * 120.00014 * 180.27644 * 9 8 7 12 12 N 1.31626 * 119.99909 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00299 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46914 * 90.00025 * 13 11 9 15 15 H 1.48497 * 109.47160 * 210.00122 * 13 11 9 16 16 H 1.48496 * 109.46856 * 330.00135 * 13 11 9 17 17 C 1.34776 * 119.99952 * 179.97438 * 2 1 3 18 18 O 1.21564 * 120.00323 * 175.48268 * 17 2 1 19 19 C 1.47766 * 119.99971 * 355.48323 * 17 2 1 20 20 C 1.40609 * 120.27296 * 41.42180 * 19 17 2 21 21 N 1.30785 * 121.53646 * 179.97438 * 20 19 17 22 22 C 1.33793 * 121.72124 * 0.02663 * 21 20 19 23 23 C 1.40755 * 120.82670 * 179.97438 * 22 21 20 24 24 F 1.35101 * 120.11435 * 0.02562 * 23 22 21 25 25 C 1.36327 * 119.76632 * 180.02562 * 23 22 21 26 26 C 1.39296 * 121.06244 * 0.02562 * 25 23 22 27 27 C 1.36149 * 120.86811 * 359.97438 * 26 25 23 28 28 C 1.40549 * 119.66806 * 359.97438 * 27 26 25 29 29 C 1.39000 * 120.27036 * 221.14860 * 19 17 2 30 30 H 1.09001 * 109.47198 * 95.16898 * 1 2 3 31 31 H 1.08995 * 109.47683 * 215.16862 * 1 2 3 32 32 H 1.09001 * 109.47035 * 335.17199 * 1 2 3 33 33 H 1.08994 * 109.47812 * 149.99804 * 3 2 1 34 34 H 1.09005 * 109.47237 * 29.99313 * 3 2 1 35 35 H 0.96693 * 114.00229 * 59.99896 * 6 4 3 36 36 H 1.08999 * 109.46861 * 60.00061 * 7 4 3 37 37 H 1.09002 * 109.46711 * 299.99970 * 7 4 3 38 38 H 0.97006 * 119.99535 * 0.02562 * 8 7 4 39 39 H 0.96997 * 119.99514 * 179.97438 * 12 11 9 40 40 H 1.08004 * 119.22739 * 359.97438 * 20 19 17 41 41 H 1.07997 * 119.46985 * 180.02562 * 25 23 22 42 42 H 1.08003 * 119.57150 * 179.97438 * 26 25 23 43 43 H 1.07999 * 120.16952 * 180.02562 * 27 26 25 44 44 H 1.07996 * 121.01886 * 359.97438 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 2.9642 0.9129 -1.9816 6 8 1.2061 1.9934 -2.0815 7 6 3.3239 2.9679 -1.4445 8 7 3.5686 3.3904 -2.8257 9 6 4.3246 4.5041 -3.0774 10 1 4.7441 5.0684 -2.2577 11 6 4.5516 4.9076 -4.3859 12 7 5.2787 5.9779 -4.6278 13 14 3.8266 3.9311 -5.8037 14 1 2.4810 4.4646 -6.1352 15 1 4.7120 4.0492 -6.9900 16 1 3.7104 2.5032 -5.4129 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1690 -0.0824 19 6 1.4034 -2.4448 0.1019 20 6 0.2085 -2.6337 -0.6148 21 7 -0.4620 -3.7544 -0.5436 22 6 -0.0462 -4.7760 0.2135 23 6 -0.7829 -5.9737 0.2766 24 9 -1.9255 -6.1048 -0.4324 25 6 -0.3395 -7.0009 1.0556 26 6 0.8354 -6.8868 1.7951 27 6 1.5749 -5.7442 1.7596 28 6 1.1495 -4.6645 0.9668 29 6 1.8903 -3.4719 0.9020 30 1 -0.3633 -0.0926 -1.0235 31 1 -0.3634 -0.8400 0.5919 32 1 -0.3633 0.9327 0.4315 33 1 3.1499 1.1384 0.5138 34 1 1.6084 2.0284 0.5137 35 1 0.6956 2.6948 -1.6544 36 1 4.2746 2.7519 -0.9572 37 1 2.8121 3.7652 -0.9055 38 1 3.1915 2.8836 -3.5619 39 1 5.4376 6.2596 -5.5423 40 1 -0.1643 -1.8346 -1.2385 41 1 -0.9084 -7.9178 1.1001 42 1 1.1642 -7.7156 2.4046 43 1 2.4843 -5.6681 2.3372 44 1 2.8079 -3.3559 1.4595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332544780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:36 Heat of formation + Delta-G solvation = -72.159475 kcal Electronic energy + Delta-G solvation = -29384.047087 eV Core-core repulsion = 25022.777838 eV Total energy + Delta-G solvation = -4361.269249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.95694 -42.20776 -40.86967 -38.94294 -38.05459 -36.60088 -35.89602 -34.47385 -33.51185 -32.41836 -31.05234 -30.80576 -28.18292 -27.43224 -25.73797 -25.15448 -24.07411 -23.19419 -22.80894 -21.26490 -19.82357 -19.72495 -19.04917 -18.34525 -17.93211 -17.68321 -17.25134 -16.85480 -16.74209 -16.54563 -16.47554 -16.11020 -15.67984 -15.53508 -15.33165 -15.13651 -14.88052 -14.64199 -14.50272 -14.32715 -14.17138 -13.85935 -13.78608 -13.34963 -13.29055 -13.16405 -12.85853 -12.79491 -12.54942 -12.46581 -12.29481 -11.96071 -11.87236 -11.67595 -11.45383 -11.16204 -11.03991 -10.70092 -10.05131 -9.69661 -9.32691 -9.27490 -8.05824 -5.38416 -0.96995 -0.60819 0.58933 1.33826 1.36940 1.38034 1.46026 1.75294 1.88894 2.45511 2.75924 2.84149 3.04076 3.24221 3.25213 3.37164 3.56200 3.62239 3.63483 3.65598 3.78469 3.95814 4.07803 4.09988 4.19629 4.26469 4.33510 4.36566 4.51007 4.61233 4.63323 4.72587 4.75889 4.90108 4.92731 4.94533 5.05006 5.16823 5.21232 5.26198 5.38366 5.67331 5.71892 6.16319 6.18544 6.55540 6.87291 6.91532 7.05618 7.82290 8.00005 9.15385 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.002059 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.391197 B =13593.403919 C =13935.737433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.594 5.594 3 C 0.096 3.904 4 C 0.099 3.901 5 H 0.071 0.929 6 O -0.562 6.562 7 C 0.125 3.875 8 N -0.755 5.755 9 C -0.234 4.234 10 H 0.061 0.939 11 C -0.062 4.062 12 N -0.981 5.981 13 Si 0.956 3.044 14 H -0.275 1.275 15 H -0.295 1.295 16 H -0.264 1.264 17 C 0.559 3.441 18 O -0.568 6.568 19 C -0.190 4.190 20 C 0.158 3.842 21 N -0.494 5.494 22 C 0.086 3.914 23 C 0.082 3.918 24 F -0.139 7.139 25 C -0.111 4.111 26 C -0.086 4.086 27 C -0.089 4.089 28 C -0.098 4.098 29 C 0.009 3.991 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.388 0.612 36 H 0.029 0.971 37 H 0.048 0.952 38 H 0.366 0.634 39 H 0.258 0.742 40 H 0.183 0.817 41 H 0.170 0.830 42 H 0.181 0.819 43 H 0.171 0.829 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.936 -28.914 20.356 38.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.324 5.324 3 C -0.027 4.027 4 C 0.038 3.962 5 H 0.089 0.911 6 O -0.369 6.369 7 C -0.002 4.002 8 N -0.401 5.401 9 C -0.365 4.365 10 H 0.079 0.921 11 C -0.254 4.254 12 N -0.631 5.631 13 Si 0.784 3.216 14 H -0.201 1.201 15 H -0.221 1.221 16 H -0.190 1.190 17 C 0.347 3.653 18 O -0.448 6.448 19 C -0.195 4.195 20 C -0.015 4.015 21 N -0.202 5.202 22 C -0.036 4.036 23 C 0.062 3.938 24 F -0.117 7.117 25 C -0.131 4.131 26 C -0.104 4.104 27 C -0.108 4.108 28 C -0.101 4.101 29 C -0.017 4.017 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.142 0.858 35 H 0.238 0.762 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.199 0.801 39 H 0.067 0.933 40 H 0.200 0.800 41 H 0.188 0.812 42 H 0.199 0.801 43 H 0.189 0.811 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.867 -29.403 19.526 38.698 hybrid contribution 0.343 0.712 -0.841 1.155 sum -15.524 -28.690 18.684 37.593 Atomic orbital electron populations 1.22353 0.76907 1.05087 1.02920 1.47672 1.08538 1.04810 1.71392 1.22185 0.99265 0.85340 0.95922 1.22253 0.84684 0.95340 0.93877 0.91123 1.86555 1.31919 1.60215 1.58235 1.21434 0.97620 0.95267 0.85859 1.42622 1.62518 1.31221 1.03742 1.19067 1.22884 1.01696 0.92847 0.92069 1.25462 1.01135 0.98961 0.99857 1.69873 1.45432 1.27851 1.19971 0.85395 0.77954 0.79105 0.79166 1.20104 1.22136 1.18981 1.18335 0.86524 0.84165 0.76231 1.90825 1.15127 1.87628 1.51246 1.20861 0.98658 0.96058 1.03930 1.23593 0.88968 0.94584 0.94339 1.67972 1.33055 1.00538 1.18598 1.19291 0.94356 0.93622 0.96303 1.17510 0.84771 0.94364 0.97106 1.91493 1.47374 1.96016 1.76829 1.21425 0.98291 0.98428 0.95005 1.21233 0.92424 0.98987 0.97757 1.21540 1.01169 0.91261 0.96824 1.18784 0.94887 0.96594 0.99786 1.22110 0.97526 0.89255 0.92853 0.91056 0.90583 0.87740 0.89563 0.85766 0.76245 0.95296 0.93385 0.80104 0.93281 0.79991 0.81202 0.80137 0.81121 0.81302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 8.56 127.77 1.09 1.94 16 2 N -0.59 -11.60 2.84 -850.30 -2.41 -14.01 16 3 C 0.10 2.00 5.07 86.38 0.44 2.44 16 4 C 0.10 2.87 3.30 30.59 0.10 2.97 16 5 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 6 O -0.56 -14.99 12.64 -148.98 -1.88 -16.87 16 7 C 0.13 4.58 5.92 86.38 0.51 5.09 16 8 N -0.76 -36.40 5.30 -343.47 -1.82 -38.22 16 9 C -0.23 -13.66 10.47 84.03 0.88 -12.78 16 10 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 11 C -0.06 -3.78 5.50 84.86 0.47 -3.32 16 12 N -0.98 -63.90 13.97 21.65 0.30 -63.60 16 13 Si 0.96 47.92 27.73 68.60 1.90 49.82 16 14 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 15 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 16 H -0.26 -12.58 6.52 99.48 0.65 -11.93 16 17 C 0.56 13.65 7.33 86.76 0.64 14.29 16 18 O -0.57 -18.47 16.57 -3.92 -0.06 -18.53 16 19 C -0.19 -3.87 5.16 -20.00 -0.10 -3.97 16 20 C 0.16 3.18 8.77 85.43 0.75 3.93 16 21 N -0.49 -11.45 10.17 -187.53 -1.91 -13.36 16 22 C 0.09 1.75 6.61 40.33 0.27 2.02 16 23 C 0.08 1.48 7.30 22.44 0.16 1.64 16 24 F -0.14 -3.02 17.11 44.97 0.77 -2.25 16 25 C -0.11 -1.05 9.91 22.08 0.22 -0.83 16 26 C -0.09 -0.46 9.95 22.04 0.22 -0.24 16 27 C -0.09 -0.72 9.77 22.35 0.22 -0.50 16 28 C -0.10 -1.54 5.74 -21.29 -0.12 -1.66 16 29 C 0.01 0.15 9.54 23.01 0.22 0.37 16 30 H 0.07 0.90 6.85 -2.39 -0.02 0.88 16 31 H 0.08 0.86 5.99 -2.39 -0.01 0.84 16 32 H 0.10 0.78 7.83 -2.39 -0.02 0.76 16 33 H 0.09 2.03 7.49 -2.39 -0.02 2.02 16 34 H 0.12 1.66 7.86 -2.38 -0.02 1.65 16 35 H 0.39 7.24 9.04 -74.06 -0.67 6.57 16 36 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 38 H 0.37 17.62 5.41 -92.70 -0.50 17.12 16 39 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 40 H 0.18 3.08 5.49 -2.91 -0.02 3.07 16 41 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 42 H 0.18 -0.44 8.06 -2.91 -0.02 -0.46 16 43 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 44 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -85.12 374.96 0.69 -84.43 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -0.16 Total: 21.20 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 5.96 Total: 11.38 kcal Atomic # 7 Polarization: -123.35 SS G_CDS: -5.84 Total: -129.18 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.95 Total: -35.41 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.77 Total: -2.25 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.90 Total: 49.82 kcal Total: -85.12 0.69 -84.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332544780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.274 kcal (2) G-P(sol) polarization free energy of solvation -85.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds