Wall clock time and date at job start Wed Apr 1 2020 04:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86801 * 119.99570 * 2 1 4 4 H 1.48505 * 109.47244 * 269.99772 * 3 2 1 5 5 H 1.48498 * 109.47579 * 29.99807 * 3 2 1 6 6 H 1.48500 * 109.47411 * 149.99892 * 3 2 1 7 7 C 1.38622 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00040 * 180.02562 * 7 2 1 9 9 O 1.34811 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.35779 * 116.99909 * 185.52801 * 9 7 2 11 11 C 1.38909 * 119.99926 * 6.34886 * 10 9 7 12 12 C 1.37998 * 120.00588 * 180.02562 * 11 10 9 13 13 C 1.38947 * 119.99382 * 0.02562 * 12 11 10 14 14 N 1.39891 * 120.00099 * 179.97438 * 13 12 11 15 15 C 1.34784 * 120.00250 * 33.44423 * 14 13 12 16 16 O 1.21634 * 119.99534 * 3.37748 * 15 14 13 17 17 C 1.47058 * 119.99815 * 183.09496 * 15 14 13 18 18 C 1.33018 * 119.99752 * 186.99606 * 17 15 14 19 19 C 1.50709 * 120.00091 * 14.84108 * 18 17 15 20 20 O 1.42898 * 109.46951 * 135.97355 * 19 18 17 21 21 C 1.42904 * 113.99566 * 179.97438 * 20 19 18 22 22 C 1.53180 * 109.54427 * 269.55465 * 21 20 19 23 23 C 1.53092 * 109.16368 * 183.15385 * 22 21 20 24 24 O 1.42904 * 109.41324 * 57.60746 * 23 22 21 25 25 C 1.42900 * 114.10283 * 298.84284 * 24 23 22 26 26 C 1.53095 * 109.41166 * 61.15745 * 25 24 23 27 27 C 1.38941 * 119.99160 * 0.24995 * 13 12 11 28 28 C 1.37994 * 119.99669 * 359.49179 * 27 13 12 29 29 H 0.96995 * 120.00373 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99901 * 359.97438 * 11 10 9 31 31 H 1.08000 * 120.00094 * 179.97438 * 12 11 10 32 32 H 0.96995 * 120.00193 * 213.44725 * 14 13 12 33 33 H 1.07998 * 120.00459 * 6.99214 * 17 15 14 34 34 H 1.08001 * 120.00313 * 194.83907 * 18 17 15 35 35 H 1.09002 * 109.46663 * 255.97331 * 19 18 17 36 36 H 1.09001 * 109.46833 * 15.97306 * 19 18 17 37 37 H 1.09000 * 109.54408 * 29.82328 * 21 20 19 38 38 H 1.08997 * 109.52587 * 303.06545 * 22 21 20 39 39 H 1.09006 * 109.52033 * 63.25279 * 22 21 20 40 40 H 1.09004 * 109.48043 * 297.62843 * 23 22 21 41 41 H 1.08996 * 109.48278 * 177.59645 * 23 22 21 42 42 H 1.08998 * 109.48112 * 301.17920 * 25 24 23 43 43 H 1.08992 * 109.48960 * 181.14490 * 25 24 23 44 44 H 1.09000 * 109.52067 * 182.48514 * 26 25 24 45 45 H 1.08995 * 109.52361 * 62.29782 * 26 25 24 46 46 H 1.08005 * 120.00207 * 179.74887 * 27 13 12 47 47 H 1.08005 * 119.99559 * 180.22877 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6528 0.7000 6 1 3.5472 1.4404 0.7000 7 6 2.0089 -1.2005 0.0005 8 1 3.0890 -1.2004 0.0010 9 8 1.3349 -2.3680 0.0005 10 6 2.0696 -3.5038 0.1176 11 6 3.4347 -3.4259 0.3624 12 6 4.1816 -4.5802 0.4809 13 6 3.5682 -5.8205 0.3548 14 7 4.3253 -6.9907 0.4744 15 6 5.3778 -7.0295 1.3153 16 8 5.6325 -6.0680 2.0155 17 6 6.2146 -8.2364 1.3908 18 6 7.1658 -8.3295 2.3160 19 6 7.1775 -7.3761 3.4832 20 8 7.4424 -8.0998 4.6866 21 6 7.4759 -7.2843 5.8597 22 6 8.9062 -6.7917 6.1006 23 6 8.9475 -5.9851 7.4011 24 8 8.4826 -6.7989 8.4799 25 6 7.1346 -7.2496 8.3319 26 6 7.0206 -8.1071 7.0688 27 6 2.2037 -5.8982 0.1042 28 6 1.4562 -4.7438 -0.0089 29 1 -0.4850 0.8400 -0.0004 30 1 3.9117 -2.4618 0.4592 31 1 5.2431 -4.5194 0.6709 32 1 4.0928 -7.7743 -0.0480 33 1 6.0569 -9.0473 0.6951 34 1 7.9296 -9.0882 2.2309 35 1 7.9538 -6.6261 3.3318 36 1 6.2076 -6.8847 3.5607 37 1 6.8118 -6.4299 5.7289 38 1 9.5773 -7.6469 6.1809 39 1 9.2185 -6.1592 5.2696 40 1 8.3073 -5.1080 7.3054 41 1 9.9712 -5.6680 7.5999 42 1 6.4708 -6.3892 8.2483 43 1 6.8523 -7.8435 9.2012 44 1 5.9843 -8.4154 6.9302 45 1 7.6535 -8.9888 7.1687 46 1 1.7274 -6.8622 0.0021 47 1 0.3949 -4.8043 -0.2000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335466299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:58 Heat of formation + Delta-G solvation = -101.438040 kcal Electronic energy + Delta-G solvation = -29208.474879 eV Core-core repulsion = 24937.103570 eV Total energy + Delta-G solvation = -4271.371309 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.36094 -39.85370 -38.79098 -37.74561 -36.62472 -34.16069 -33.91938 -32.39181 -32.17400 -31.48954 -30.23978 -28.42195 -26.66066 -25.30821 -24.43285 -23.93307 -22.96757 -22.20005 -20.93215 -20.62794 -19.55226 -18.04507 -17.52957 -17.39976 -17.03048 -16.44144 -16.38959 -16.04277 -15.80786 -15.20791 -14.97431 -14.54745 -14.49231 -14.35216 -13.95999 -13.83150 -13.69235 -13.58870 -13.39724 -13.05835 -12.90749 -12.63386 -12.52711 -12.18436 -11.86314 -11.72221 -11.63207 -11.55775 -11.52332 -11.18004 -11.01314 -10.78502 -10.73536 -10.45756 -10.13333 -9.98656 -9.73533 -9.56141 -9.40934 -9.17492 -8.70037 -8.24025 -6.94835 -6.46803 -4.04336 1.01983 2.12713 2.22521 3.09602 3.13393 3.17025 3.18300 3.32783 3.44561 3.58177 3.95838 4.39491 4.43049 4.53337 4.60441 4.67216 4.71265 4.82293 4.86341 5.04856 5.08745 5.13669 5.15076 5.22028 5.28245 5.31437 5.33133 5.48029 5.53536 5.64230 5.65848 5.69410 5.75521 5.85668 5.94963 6.06471 6.15752 6.17094 6.32025 6.69511 6.81332 6.82797 6.97062 7.00354 7.06786 7.25904 7.40650 7.65037 7.75177 7.98044 8.30846 8.98936 9.68210 10.71108 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.002152 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.555677 B =13005.905077 C =14874.552755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.146 3.854 11 C -0.219 4.219 12 C -0.064 4.064 13 C 0.033 3.967 14 N -0.653 5.653 15 C 0.532 3.468 16 O -0.528 6.528 17 C -0.207 4.207 18 C -0.056 4.056 19 C 0.065 3.935 20 O -0.385 6.385 21 C 0.091 3.909 22 C -0.178 4.178 23 C 0.062 3.938 24 O -0.383 6.383 25 C 0.063 3.937 26 C -0.152 4.152 27 C -0.093 4.093 28 C -0.178 4.178 29 H 0.270 0.730 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.403 0.597 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.115 0.885 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.246 -17.491 8.476 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.092 3.908 11 C -0.239 4.239 12 C -0.084 4.084 13 C -0.059 4.059 14 N -0.296 5.296 15 C 0.322 3.678 16 O -0.407 6.407 17 C -0.228 4.228 18 C -0.076 4.076 19 C -0.010 4.010 20 O -0.304 6.304 21 C 0.033 3.967 22 C -0.216 4.216 23 C -0.014 4.014 24 O -0.302 6.302 25 C -0.014 4.014 26 C -0.190 4.190 27 C -0.113 4.113 28 C -0.197 4.197 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.237 0.763 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.133 0.867 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 15.139 -16.837 9.095 24.401 hybrid contribution 0.237 0.613 -0.732 0.984 sum 15.377 -16.224 8.363 23.866 Atomic orbital electron populations 1.70040 1.05950 1.27710 1.45991 1.25286 0.95852 0.98849 0.96534 0.85716 0.78964 0.80063 0.78737 1.19856 1.20238 1.19157 1.21319 0.91806 0.80841 1.52664 0.89082 1.83990 1.34224 1.11454 1.78257 1.19424 0.90422 0.88078 0.92905 1.21094 0.94203 0.98689 1.09918 1.20736 0.99497 0.90462 0.97667 1.17242 0.90441 0.85386 1.12835 1.43139 1.29442 1.14361 1.42645 1.18681 0.80906 0.88452 0.79746 1.90718 1.70773 1.37584 1.41642 1.22629 0.98028 0.98236 1.03942 1.23417 0.94448 0.97476 0.92228 1.22192 1.03284 0.92943 0.82614 1.87827 1.92836 1.35242 1.14530 1.22049 0.95613 0.93620 0.85384 1.22733 0.98456 1.01662 0.98771 1.22572 1.00511 0.92508 0.85852 1.87931 1.29057 1.69267 1.43948 1.22596 0.83706 0.97503 0.97604 1.22292 1.03101 0.99944 0.93689 1.20355 0.91308 0.97528 1.02130 1.19995 0.99849 0.89564 1.10336 0.91995 0.85214 0.86075 0.76250 0.84662 0.85090 0.91807 0.88246 0.91624 0.90192 0.90570 0.92829 0.88484 0.92780 0.88228 0.90076 0.90174 0.86704 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.54 29.55 -169.99 -5.02 15.51 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.89 9.43 30.87 0.29 -10.60 16 8 H 0.09 2.37 5.30 -52.48 -0.28 2.09 16 9 O -0.18 -4.99 9.75 0.01 0.00 -4.99 16 10 C 0.15 3.51 6.65 -39.08 -0.26 3.25 16 11 C -0.22 -4.89 9.12 -39.42 -0.36 -5.25 16 12 C -0.06 -1.26 8.65 -39.41 -0.34 -1.60 16 13 C 0.03 0.58 6.29 -83.66 -0.53 0.05 16 14 N -0.65 -8.62 5.34 -10.90 -0.06 -8.68 16 15 C 0.53 7.23 7.30 -12.68 -0.09 7.14 16 16 O -0.53 -8.94 10.97 5.25 0.06 -8.89 16 17 C -0.21 -1.99 10.01 -37.82 -0.38 -2.36 16 18 C -0.06 -0.54 9.94 -36.12 -0.36 -0.89 16 19 C 0.06 0.75 5.08 36.01 0.18 0.93 16 20 O -0.38 -4.39 9.98 -35.23 -0.35 -4.74 16 21 C 0.09 0.91 2.70 -26.54 -0.07 0.84 16 22 C -0.18 -1.56 5.76 -26.59 -0.15 -1.71 16 23 C 0.06 0.51 6.84 37.21 0.25 0.77 16 24 O -0.38 -3.75 10.76 -35.23 -0.38 -4.13 16 25 C 0.06 0.50 6.84 37.21 0.25 0.76 16 26 C -0.15 -1.32 5.79 -26.59 -0.15 -1.47 16 27 C -0.09 -1.60 9.95 -39.41 -0.39 -1.99 16 28 C -0.18 -3.65 9.98 -39.42 -0.39 -4.05 16 29 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.13 2.92 5.72 -52.49 -0.30 2.62 16 31 H 0.12 2.34 6.35 -52.49 -0.33 2.01 16 32 H 0.40 3.76 8.80 -40.82 -0.36 3.40 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.06 0.73 7.99 -51.93 -0.42 0.31 16 36 H 0.10 1.40 5.27 -51.93 -0.27 1.12 16 37 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.63 7.99 -51.93 -0.42 0.22 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 47 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 389.94 15.07 5.88 5.88 Total: -1.00 -33.33 389.94 -8.28 -41.60 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.56 Total: 8.07 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -2.59 Total: -15.22 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.70 Total: -33.10 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.67 Total: -22.75 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.33 -8.28 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335466299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.834 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds