Wall clock time and date at job start Wed Apr 1 2020 04:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86801 * 119.99570 * 2 1 4 4 H 1.48505 * 109.47244 * 269.99772 * 3 2 1 5 5 H 1.48498 * 109.47579 * 29.99807 * 3 2 1 6 6 H 1.48500 * 109.47411 * 149.99892 * 3 2 1 7 7 C 1.38622 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00040 * 180.02562 * 7 2 1 9 9 O 1.34811 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.35779 * 116.99909 * 185.52801 * 9 7 2 11 11 C 1.38909 * 119.99926 * 6.34886 * 10 9 7 12 12 C 1.37998 * 120.00588 * 180.02562 * 11 10 9 13 13 C 1.38947 * 119.99382 * 0.02562 * 12 11 10 14 14 N 1.39891 * 120.00099 * 179.97438 * 13 12 11 15 15 C 1.34784 * 120.00250 * 33.44423 * 14 13 12 16 16 O 1.21634 * 119.99534 * 3.37748 * 15 14 13 17 17 C 1.47058 * 119.99815 * 183.09496 * 15 14 13 18 18 C 1.33018 * 119.99752 * 186.99606 * 17 15 14 19 19 C 1.50709 * 120.00091 * 14.84108 * 18 17 15 20 20 O 1.42898 * 109.46951 * 135.97355 * 19 18 17 21 21 C 1.42904 * 113.99566 * 179.97438 * 20 19 18 22 22 C 1.53180 * 109.54427 * 269.55465 * 21 20 19 23 23 C 1.53092 * 109.16368 * 183.15385 * 22 21 20 24 24 O 1.42904 * 109.41324 * 57.60746 * 23 22 21 25 25 C 1.42900 * 114.10283 * 298.84284 * 24 23 22 26 26 C 1.53095 * 109.41166 * 61.15745 * 25 24 23 27 27 C 1.38941 * 119.99160 * 0.24995 * 13 12 11 28 28 C 1.37994 * 119.99669 * 359.49179 * 27 13 12 29 29 H 0.96995 * 120.00373 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99901 * 359.97438 * 11 10 9 31 31 H 1.08000 * 120.00094 * 179.97438 * 12 11 10 32 32 H 0.96995 * 120.00193 * 213.44725 * 14 13 12 33 33 H 1.07998 * 120.00459 * 6.99214 * 17 15 14 34 34 H 1.08001 * 120.00313 * 194.83907 * 18 17 15 35 35 H 1.09002 * 109.46663 * 255.97331 * 19 18 17 36 36 H 1.09001 * 109.46833 * 15.97306 * 19 18 17 37 37 H 1.09000 * 109.54408 * 29.82328 * 21 20 19 38 38 H 1.08997 * 109.52587 * 303.06545 * 22 21 20 39 39 H 1.09006 * 109.52033 * 63.25279 * 22 21 20 40 40 H 1.09004 * 109.48043 * 297.62843 * 23 22 21 41 41 H 1.08996 * 109.48278 * 177.59645 * 23 22 21 42 42 H 1.08998 * 109.48112 * 301.17920 * 25 24 23 43 43 H 1.08992 * 109.48960 * 181.14490 * 25 24 23 44 44 H 1.09000 * 109.52067 * 182.48514 * 26 25 24 45 45 H 1.08995 * 109.52361 * 62.29782 * 26 25 24 46 46 H 1.08005 * 120.00207 * 179.74887 * 27 13 12 47 47 H 1.08005 * 119.99559 * 180.22877 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6528 0.7000 6 1 3.5472 1.4404 0.7000 7 6 2.0089 -1.2005 0.0005 8 1 3.0890 -1.2004 0.0010 9 8 1.3349 -2.3680 0.0005 10 6 2.0696 -3.5038 0.1176 11 6 3.4347 -3.4259 0.3624 12 6 4.1816 -4.5802 0.4809 13 6 3.5682 -5.8205 0.3548 14 7 4.3253 -6.9907 0.4744 15 6 5.3778 -7.0295 1.3153 16 8 5.6325 -6.0680 2.0155 17 6 6.2146 -8.2364 1.3908 18 6 7.1658 -8.3295 2.3160 19 6 7.1775 -7.3761 3.4832 20 8 7.4424 -8.0998 4.6866 21 6 7.4759 -7.2843 5.8597 22 6 8.9062 -6.7917 6.1006 23 6 8.9475 -5.9851 7.4011 24 8 8.4826 -6.7989 8.4799 25 6 7.1346 -7.2496 8.3319 26 6 7.0206 -8.1071 7.0688 27 6 2.2037 -5.8982 0.1042 28 6 1.4562 -4.7438 -0.0089 29 1 -0.4850 0.8400 -0.0004 30 1 3.9117 -2.4618 0.4592 31 1 5.2431 -4.5194 0.6709 32 1 4.0928 -7.7743 -0.0480 33 1 6.0569 -9.0473 0.6951 34 1 7.9296 -9.0882 2.2309 35 1 7.9538 -6.6261 3.3318 36 1 6.2076 -6.8847 3.5607 37 1 6.8118 -6.4299 5.7289 38 1 9.5773 -7.6469 6.1809 39 1 9.2185 -6.1592 5.2696 40 1 8.3073 -5.1080 7.3054 41 1 9.9712 -5.6680 7.5999 42 1 6.4708 -6.3892 8.2483 43 1 6.8523 -7.8435 9.2012 44 1 5.9843 -8.4154 6.9302 45 1 7.6535 -8.9888 7.1687 46 1 1.7274 -6.8622 0.0021 47 1 0.3949 -4.8043 -0.2000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335466299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:57 Heat of formation + Delta-G solvation = -124.111099 kcal Electronic energy + Delta-G solvation = -29209.458056 eV Core-core repulsion = 24937.103570 eV Total energy + Delta-G solvation = -4272.354487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.59964 -40.67185 -40.37515 -38.69917 -38.12225 -35.47944 -34.85947 -34.18081 -33.13811 -32.15805 -31.87474 -29.89074 -27.77792 -27.14762 -25.21491 -24.65299 -24.19358 -23.74388 -22.27492 -21.48035 -20.67345 -19.82830 -19.02421 -18.43666 -17.91417 -17.89928 -17.14375 -16.94543 -16.75088 -16.42538 -16.24743 -15.93497 -15.58040 -15.52455 -15.45362 -15.22883 -14.91600 -14.68862 -14.55451 -14.36678 -14.00915 -13.80318 -13.59702 -13.35368 -13.32459 -13.21545 -12.92513 -12.69721 -12.49430 -12.45895 -12.31406 -12.14845 -11.97885 -11.44229 -11.35138 -11.19032 -10.96461 -10.71450 -10.62213 -10.39170 -10.21083 -9.84819 -8.58846 -8.48451 -6.14973 0.11905 0.51574 0.67722 1.33848 1.42368 1.50895 2.11304 2.16031 2.20483 2.64520 2.82354 2.90584 3.14886 3.49873 3.68622 3.69275 3.78153 3.93179 3.95831 4.07413 4.09191 4.10959 4.20680 4.27567 4.39855 4.45628 4.47175 4.52586 4.60230 4.63039 4.71059 4.73177 4.76288 4.78806 4.98473 5.04815 5.05221 5.11605 5.13109 5.17901 5.33264 5.35750 5.48149 5.58751 5.68917 6.00580 6.13652 6.15178 6.16188 6.56508 6.96381 7.22729 7.75992 8.74526 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.002152 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.555677 B =13005.905077 C =14874.552755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.016 2.984 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.412 4.412 8 H 0.097 0.903 9 O -0.227 6.227 10 C 0.105 3.895 11 C -0.228 4.228 12 C -0.075 4.075 13 C 0.063 3.937 14 N -0.643 5.643 15 C 0.525 3.475 16 O -0.565 6.565 17 C -0.200 4.200 18 C -0.052 4.052 19 C 0.064 3.936 20 O -0.390 6.390 21 C 0.083 3.917 22 C -0.172 4.172 23 C 0.060 3.940 24 O -0.399 6.399 25 C 0.061 3.939 26 C -0.148 4.148 27 C -0.079 4.079 28 C -0.180 4.180 29 H 0.273 0.727 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.427 0.573 33 H 0.181 0.819 34 H 0.164 0.836 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.113 0.887 42 H 0.055 0.945 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.167 0.833 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.283 -20.580 8.441 28.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.218 4.218 3 Si 0.835 3.165 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.489 4.489 8 H 0.114 0.886 9 O -0.134 6.134 10 C 0.054 3.946 11 C -0.248 4.248 12 C -0.095 4.095 13 C -0.030 4.030 14 N -0.289 5.289 15 C 0.318 3.682 16 O -0.447 6.447 17 C -0.220 4.220 18 C -0.071 4.071 19 C -0.011 4.011 20 O -0.310 6.310 21 C 0.026 3.974 22 C -0.210 4.210 23 C -0.016 4.016 24 O -0.318 6.318 25 C -0.016 4.016 26 C -0.185 4.185 27 C -0.099 4.099 28 C -0.200 4.200 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.142 0.858 32 H 0.267 0.733 33 H 0.198 0.802 34 H 0.181 0.819 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.131 0.869 42 H 0.074 0.926 43 H 0.136 0.864 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.184 0.816 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 17.212 -20.020 9.047 27.909 hybrid contribution -0.237 1.197 -0.638 1.377 sum 16.975 -18.824 8.409 26.706 Atomic orbital electron populations 1.70172 1.07861 1.28814 1.48757 1.26526 0.96863 1.02576 0.95884 0.84628 0.77726 0.74792 0.79339 1.18617 1.19399 1.18094 1.21739 0.92321 0.81605 1.53193 0.88609 1.83947 1.35573 1.12456 1.81427 1.19951 0.91274 0.88345 0.95010 1.21086 0.93959 0.99248 1.10465 1.20820 0.99580 0.90845 0.98278 1.17388 0.90950 0.86149 1.08553 1.43090 1.28949 1.13691 1.43143 1.19493 0.80613 0.89402 0.78715 1.90736 1.71485 1.39473 1.42982 1.22746 0.96704 0.97420 1.05121 1.23659 0.95057 0.97362 0.91055 1.22079 1.01604 0.93655 0.83763 1.87814 1.92807 1.35559 1.14781 1.22203 0.96249 0.93473 0.85524 1.22673 0.97515 1.01676 0.99163 1.22677 1.01448 0.92237 0.85282 1.87909 1.29844 1.69512 1.44528 1.22722 0.83148 0.97732 0.97987 1.22268 1.03159 0.99764 0.93358 1.20786 0.90902 0.98404 0.99804 1.20332 1.00681 0.89397 1.09566 0.91772 0.86659 0.85779 0.73336 0.80170 0.81873 0.92292 0.91023 0.92878 0.90272 0.90434 0.92768 0.86943 0.92632 0.86446 0.89801 0.90233 0.81601 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.47 13.67 21.61 0.30 -56.18 16 2 C -0.02 -1.19 5.49 84.82 0.47 -0.73 16 3 Si 1.02 43.55 29.55 68.60 2.03 45.58 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 7 C -0.41 -24.40 9.43 67.91 0.64 -23.76 16 8 H 0.10 5.30 5.30 -2.91 -0.02 5.29 16 9 O -0.23 -13.75 9.75 -22.87 -0.22 -13.97 16 10 C 0.10 5.26 6.65 22.59 0.15 5.41 16 11 C -0.23 -10.57 9.12 22.37 0.20 -10.37 16 12 C -0.08 -2.95 8.65 22.38 0.19 -2.75 16 13 C 0.06 2.04 6.29 38.19 0.24 2.29 16 14 N -0.64 -14.46 5.34 -306.65 -1.64 -16.10 16 15 C 0.53 12.73 7.30 86.56 0.63 13.36 16 16 O -0.57 -18.58 10.97 -4.14 -0.05 -18.62 16 17 C -0.20 -2.95 10.01 23.42 0.23 -2.71 16 18 C -0.05 -0.81 9.94 24.52 0.24 -0.57 16 19 C 0.06 1.41 5.08 71.24 0.36 1.77 16 20 O -0.39 -8.41 9.98 -148.98 -1.49 -9.90 16 21 C 0.08 1.62 2.70 30.71 0.08 1.70 16 22 C -0.17 -2.88 5.76 30.69 0.18 -2.70 16 23 C 0.06 0.94 6.84 72.01 0.49 1.43 16 24 O -0.40 -7.38 10.76 -148.98 -1.60 -8.99 16 25 C 0.06 0.91 6.84 72.01 0.49 1.40 16 26 C -0.15 -2.42 5.79 30.69 0.18 -2.24 16 27 C -0.08 -2.48 9.95 22.38 0.22 -2.26 16 28 C -0.18 -7.36 9.98 22.37 0.22 -7.14 16 29 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.12 5.55 5.72 -2.91 -0.02 5.53 16 31 H 0.12 4.79 6.35 -2.91 -0.02 4.77 16 32 H 0.43 5.64 8.80 -92.71 -0.82 4.83 16 33 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.06 1.32 7.99 -2.39 -0.02 1.30 16 36 H 0.07 2.00 5.27 -2.39 -0.01 1.99 16 37 H 0.05 1.15 7.79 -2.39 -0.02 1.13 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.25 7.99 -2.38 -0.02 1.23 16 40 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.17 3.56 8.06 -2.91 -0.02 3.53 16 47 H 0.13 5.00 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -78.84 389.94 2.75 -76.10 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.18 Total: 29.95 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 5.24 Total: -27.87 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -1.34 Total: -72.27 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -3.36 Total: -51.47 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -78.84 2.75 -76.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335466299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.015 kcal (2) G-P(sol) polarization free energy of solvation -78.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds