Wall clock time and date at job start Wed Apr 1 2020 04:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99669 * 2 1 4 4 H 1.48499 * 109.47313 * 239.99976 * 3 2 1 5 5 H 1.48497 * 109.47474 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47261 * 120.00176 * 3 2 1 7 7 C 1.37870 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00516 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.46758 * 59.99911 * 9 7 2 11 11 N 1.46899 * 109.47320 * 179.97438 * 9 7 2 12 12 C 1.46896 * 110.99972 * 204.99672 * 11 9 7 13 13 C 1.52998 * 109.47596 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.46661 * 305.00135 * 13 12 11 15 15 O 1.42899 * 109.46800 * 64.99729 * 13 12 11 16 16 C 1.52992 * 109.47705 * 185.00326 * 13 12 11 17 17 C 1.52997 * 109.47482 * 174.99884 * 16 13 12 18 18 O 1.42898 * 109.47319 * 180.02562 * 17 16 13 19 19 C 1.42902 * 114.00186 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47205 * 179.97438 * 19 18 17 21 21 C 1.38239 * 119.99967 * 269.73026 * 20 19 18 22 22 C 1.38238 * 119.99948 * 179.76864 * 21 20 19 23 23 C 1.38238 * 119.99808 * 0.50205 * 22 21 20 24 24 C 1.38229 * 120.00036 * 359.74700 * 23 22 21 25 25 C 1.38235 * 120.00235 * 0.02562 * 24 23 22 26 26 C 1.53003 * 109.46757 * 299.99964 * 9 7 2 27 27 F 1.39899 * 109.47391 * 299.99644 * 26 9 7 28 28 F 1.39905 * 109.47181 * 59.99793 * 26 9 7 29 29 F 1.39895 * 109.47055 * 179.97438 * 26 9 7 30 30 H 0.96992 * 120.00602 * 359.97438 * 1 2 3 31 31 H 1.00894 * 111.00229 * 328.95514 * 11 9 7 32 32 H 1.08998 * 109.47147 * 59.99875 * 12 11 9 33 33 H 1.09001 * 109.47561 * 300.00488 * 12 11 9 34 34 H 0.96705 * 114.00115 * 60.00909 * 15 13 12 35 35 H 1.09002 * 109.47103 * 54.99637 * 16 13 12 36 36 H 1.08998 * 109.46862 * 295.00449 * 16 13 12 37 37 H 1.09002 * 109.47153 * 59.99783 * 17 16 13 38 38 H 1.09001 * 109.46832 * 299.99974 * 17 16 13 39 39 H 1.09001 * 109.46918 * 299.99649 * 19 18 17 40 40 H 1.08999 * 109.46857 * 59.99535 * 19 18 17 41 41 H 1.08001 * 119.99967 * 359.97438 * 21 20 19 42 42 H 1.07997 * 119.99552 * 180.22485 * 22 21 20 43 43 H 1.07993 * 119.99849 * 179.72903 * 23 22 21 44 44 H 1.07999 * 120.00247 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.00313 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 1 0.6249 -2.5563 -0.8919 11 7 2.2058 -3.6157 -0.0027 12 6 1.6033 -4.8230 -0.5833 13 6 2.6250 -5.9617 -0.5665 14 1 3.5340 -5.6416 -1.0759 15 8 2.9327 -6.3056 0.7859 16 6 2.0416 -7.1812 -1.2828 17 6 3.1064 -8.2759 -1.3759 18 8 2.5617 -9.4147 -2.0455 19 6 3.4795 -10.5010 -2.1852 20 6 2.8028 -11.6416 -2.9007 21 6 2.1328 -12.6108 -2.1777 22 6 1.5079 -13.6545 -2.8343 23 6 1.5618 -13.7347 -4.2133 24 6 2.2361 -12.7683 -4.9359 25 6 2.8570 -11.7221 -4.2797 26 6 0.3711 -2.5811 1.2472 27 9 1.1749 -2.5077 2.3898 28 9 -0.5381 -1.5177 1.2476 29 9 -0.3288 -3.7924 1.2459 30 1 -0.4850 0.8399 0.0004 31 1 3.0542 -3.3656 -0.4882 32 1 1.3014 -4.6203 -1.6108 33 1 0.7297 -5.1106 0.0018 34 1 2.1688 -6.6003 1.3004 35 1 1.7249 -6.8962 -2.2861 36 1 1.1839 -7.5551 -0.7237 37 1 3.4232 -8.5609 -0.3726 38 1 3.9641 -7.9019 -1.9351 39 1 4.3454 -10.1733 -2.7607 40 1 3.8033 -10.8323 -1.1986 41 1 2.0948 -12.5508 -1.1000 42 1 0.9814 -14.4097 -2.2695 43 1 1.0773 -14.5524 -4.7259 44 1 2.2786 -12.8311 -6.0132 45 1 3.3842 -10.9673 -4.8442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336780743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:05 Heat of formation + Delta-G solvation = -214.175681 kcal Electronic energy + Delta-G solvation = -30097.409346 eV Core-core repulsion = 25279.292625 eV Total energy + Delta-G solvation = -4818.116720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.29113 -45.95445 -45.52606 -39.68097 -38.40498 -37.33769 -35.17696 -32.82591 -32.59388 -31.34446 -31.21833 -28.85305 -26.53797 -25.43519 -24.47549 -22.90068 -22.49725 -21.69673 -21.23950 -20.66416 -17.38160 -17.26351 -16.83675 -16.73055 -16.59121 -16.48125 -15.96756 -15.68544 -15.56363 -15.29975 -14.87810 -14.70397 -14.33040 -13.82052 -13.75179 -13.66214 -13.35837 -13.01208 -12.97063 -12.78158 -12.66210 -12.55347 -12.38390 -12.17529 -12.01948 -11.79623 -11.59008 -11.47644 -11.31785 -11.21157 -11.16922 -11.03844 -10.81800 -10.66943 -10.48786 -10.26707 -9.79405 -9.59393 -9.37345 -9.23363 -9.14446 -8.64133 -7.62497 -6.17118 -4.37851 0.94644 1.08894 3.22834 3.23310 3.28295 3.31061 3.76410 4.23646 4.43553 4.49455 4.57082 4.62888 4.69305 4.79442 4.87017 4.92269 4.95735 4.99973 5.05313 5.09501 5.21632 5.32084 5.33787 5.36985 5.51771 5.62235 5.64949 5.71827 5.83791 5.90477 5.98726 6.03555 6.12341 6.12806 6.18211 6.28072 6.34804 6.43742 6.65965 6.86525 7.00928 7.49161 7.67832 7.86228 7.90574 8.27016 8.66246 9.28687 10.75081 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.022311 B = 0.001774 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.682546 B =15777.118146 C =16105.956291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.061 3.939 3 Si 0.911 3.089 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.187 3.813 10 H 0.038 0.962 11 N -0.672 5.672 12 C 0.018 3.982 13 C 0.116 3.884 14 H 0.096 0.904 15 O -0.550 6.550 16 C -0.149 4.149 17 C 0.066 3.934 18 O -0.384 6.384 19 C 0.103 3.897 20 C -0.089 4.089 21 C -0.099 4.099 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.099 4.099 26 C 0.439 3.561 27 F -0.199 7.199 28 F -0.142 7.142 29 F -0.232 7.232 30 H 0.266 0.734 31 H 0.347 0.653 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.373 0.627 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.302 -22.511 -6.912 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.093 0.907 9 C 0.076 3.924 10 H 0.056 0.944 11 N -0.304 5.304 12 C -0.112 4.112 13 C 0.056 3.944 14 H 0.113 0.887 15 O -0.355 6.355 16 C -0.188 4.188 17 C -0.010 4.010 18 O -0.304 6.304 19 C 0.026 3.974 20 C -0.089 4.089 21 C -0.117 4.117 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.142 4.142 25 C -0.117 4.117 26 C 0.384 3.616 27 F -0.180 7.180 28 F -0.123 7.123 29 F -0.214 7.214 30 H 0.076 0.924 31 H 0.167 0.833 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.220 0.780 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.378 -22.381 -6.499 23.713 hybrid contribution -0.229 0.932 -0.484 1.075 sum 4.149 -21.449 -6.983 22.935 Atomic orbital electron populations 1.70379 1.05831 1.27114 1.44756 1.25119 0.95133 1.00141 0.94296 0.86331 0.79362 0.81582 0.78902 1.19938 1.21049 1.19830 1.20863 0.93686 0.88346 1.54726 0.90711 1.20073 0.91367 0.90914 0.90017 0.94445 1.60121 1.07813 1.03668 1.58847 1.22875 0.98029 0.92058 0.98270 1.21800 0.98244 0.91304 0.83007 0.88652 1.86558 1.38100 1.88211 1.22604 1.22234 0.98816 0.94997 1.02713 1.22472 0.96254 0.85825 0.96433 1.87948 1.38824 1.24449 1.79178 1.21276 0.91440 0.85809 0.98856 1.19653 0.99777 0.95597 0.93841 1.21101 0.96436 0.94098 1.00078 1.21166 0.99844 0.98516 0.94681 1.21205 0.99008 0.98937 0.94325 1.21161 0.98214 0.94849 0.99994 1.21095 0.99032 0.97899 0.93713 1.22564 0.79835 0.71835 0.87401 1.93004 1.74280 1.96017 1.54733 1.93400 1.68643 1.53961 1.96323 1.92935 1.81910 1.49466 1.97066 0.92386 0.83338 0.94870 0.89961 0.78027 0.90267 0.90652 0.92418 0.93351 0.92491 0.92423 0.85877 0.85897 0.86040 0.85908 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.40 9.50 55.43 0.53 -22.87 16 2 C 0.06 1.61 5.20 -17.82 -0.09 1.52 16 3 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.09 8.33 -34.44 -0.29 -14.38 16 8 H 0.07 1.90 7.62 -52.48 -0.40 1.50 16 9 C 0.19 4.54 2.26 -68.86 -0.16 4.39 16 10 H 0.04 0.97 7.80 -51.93 -0.40 0.57 16 11 N -0.67 -13.66 6.17 -107.95 -0.67 -14.32 16 12 C 0.02 0.29 5.03 -3.83 -0.02 0.28 16 13 C 0.12 1.56 3.14 -26.74 -0.08 1.48 16 14 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 15 O -0.55 -7.98 12.82 -35.23 -0.45 -8.43 16 16 C -0.15 -1.73 5.26 -26.74 -0.14 -1.87 16 17 C 0.07 0.72 5.84 37.16 0.22 0.94 16 18 O -0.38 -4.53 10.33 -35.23 -0.36 -4.89 16 19 C 0.10 0.96 6.06 36.00 0.22 1.18 16 20 C -0.09 -0.85 5.51 -104.62 -0.58 -1.42 16 21 C -0.10 -0.88 9.70 -39.58 -0.38 -1.26 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 25 C -0.10 -0.88 9.70 -39.58 -0.38 -1.26 16 26 C 0.44 11.14 2.81 37.16 0.10 11.24 16 27 F -0.20 -5.17 16.95 2.25 0.04 -5.13 16 28 F -0.14 -3.92 12.91 2.25 0.03 -3.89 16 29 F -0.23 -5.37 15.04 2.25 0.03 -5.33 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.35 6.71 8.22 -39.30 -0.32 6.39 16 32 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 33 H 0.08 1.45 6.03 -51.93 -0.31 1.14 16 34 H 0.37 4.55 9.05 45.56 0.41 4.96 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 40 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -30.31 385.48 -8.48 -38.79 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.63 Total: 7.85 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.78 Total: -3.19 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.14 Total: -37.19 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.82 Total: -13.32 kcal Atomic # 9 Polarization: -14.46 SS G_CDS: 0.10 Total: -14.36 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.31 -8.48 -38.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336780743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.386 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds