Wall clock time and date at job start Wed Apr 1 2020 04:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99669 * 2 1 4 4 H 1.48499 * 109.47313 * 239.99976 * 3 2 1 5 5 H 1.48497 * 109.47474 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47261 * 120.00176 * 3 2 1 7 7 C 1.37870 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00516 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.46758 * 59.99911 * 9 7 2 11 11 N 1.46899 * 109.47320 * 179.97438 * 9 7 2 12 12 C 1.46896 * 110.99972 * 204.99672 * 11 9 7 13 13 C 1.52998 * 109.47596 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.46661 * 305.00135 * 13 12 11 15 15 O 1.42899 * 109.46800 * 64.99729 * 13 12 11 16 16 C 1.52992 * 109.47705 * 185.00326 * 13 12 11 17 17 C 1.52997 * 109.47482 * 174.99884 * 16 13 12 18 18 O 1.42898 * 109.47319 * 180.02562 * 17 16 13 19 19 C 1.42902 * 114.00186 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47205 * 179.97438 * 19 18 17 21 21 C 1.38239 * 119.99967 * 269.73026 * 20 19 18 22 22 C 1.38238 * 119.99948 * 179.76864 * 21 20 19 23 23 C 1.38238 * 119.99808 * 0.50205 * 22 21 20 24 24 C 1.38229 * 120.00036 * 359.74700 * 23 22 21 25 25 C 1.38235 * 120.00235 * 0.02562 * 24 23 22 26 26 C 1.53003 * 109.46757 * 299.99964 * 9 7 2 27 27 F 1.39899 * 109.47391 * 299.99644 * 26 9 7 28 28 F 1.39905 * 109.47181 * 59.99793 * 26 9 7 29 29 F 1.39895 * 109.47055 * 179.97438 * 26 9 7 30 30 H 0.96992 * 120.00602 * 359.97438 * 1 2 3 31 31 H 1.00894 * 111.00229 * 328.95514 * 11 9 7 32 32 H 1.08998 * 109.47147 * 59.99875 * 12 11 9 33 33 H 1.09001 * 109.47561 * 300.00488 * 12 11 9 34 34 H 0.96705 * 114.00115 * 60.00909 * 15 13 12 35 35 H 1.09002 * 109.47103 * 54.99637 * 16 13 12 36 36 H 1.08998 * 109.46862 * 295.00449 * 16 13 12 37 37 H 1.09002 * 109.47153 * 59.99783 * 17 16 13 38 38 H 1.09001 * 109.46832 * 299.99974 * 17 16 13 39 39 H 1.09001 * 109.46918 * 299.99649 * 19 18 17 40 40 H 1.08999 * 109.46857 * 59.99535 * 19 18 17 41 41 H 1.08001 * 119.99967 * 359.97438 * 21 20 19 42 42 H 1.07997 * 119.99552 * 180.22485 * 22 21 20 43 43 H 1.07993 * 119.99849 * 179.72903 * 23 22 21 44 44 H 1.07999 * 120.00247 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.00313 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 1 0.6249 -2.5563 -0.8919 11 7 2.2058 -3.6157 -0.0027 12 6 1.6033 -4.8230 -0.5833 13 6 2.6250 -5.9617 -0.5665 14 1 3.5340 -5.6416 -1.0759 15 8 2.9327 -6.3056 0.7859 16 6 2.0416 -7.1812 -1.2828 17 6 3.1064 -8.2759 -1.3759 18 8 2.5617 -9.4147 -2.0455 19 6 3.4795 -10.5010 -2.1852 20 6 2.8028 -11.6416 -2.9007 21 6 2.1328 -12.6108 -2.1777 22 6 1.5079 -13.6545 -2.8343 23 6 1.5618 -13.7347 -4.2133 24 6 2.2361 -12.7683 -4.9359 25 6 2.8570 -11.7221 -4.2797 26 6 0.3711 -2.5811 1.2472 27 9 1.1749 -2.5077 2.3898 28 9 -0.5381 -1.5177 1.2476 29 9 -0.3288 -3.7924 1.2459 30 1 -0.4850 0.8399 0.0004 31 1 3.0542 -3.3656 -0.4882 32 1 1.3014 -4.6203 -1.6108 33 1 0.7297 -5.1106 0.0018 34 1 2.1688 -6.6003 1.3004 35 1 1.7249 -6.8962 -2.2861 36 1 1.1839 -7.5551 -0.7237 37 1 3.4232 -8.5609 -0.3726 38 1 3.9641 -7.9019 -1.9351 39 1 4.3454 -10.1733 -2.7607 40 1 3.8033 -10.8323 -1.1986 41 1 2.0948 -12.5508 -1.1000 42 1 0.9814 -14.4097 -2.2695 43 1 1.0773 -14.5524 -4.7259 44 1 2.2786 -12.8311 -6.0132 45 1 3.3842 -10.9673 -4.8442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336780743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:04 Heat of formation + Delta-G solvation = -233.838825 kcal Electronic energy + Delta-G solvation = -30098.262003 eV Core-core repulsion = 25279.292625 eV Total energy + Delta-G solvation = -4818.969378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.32113 -47.96312 -47.62516 -40.31644 -39.42428 -38.32891 -36.80835 -34.51306 -33.55237 -32.29680 -31.80127 -30.42136 -27.61009 -26.57515 -26.40484 -23.70539 -23.48955 -22.69730 -22.45055 -22.05012 -19.28020 -18.77600 -18.59216 -17.93701 -17.55049 -17.46149 -17.34061 -17.04678 -16.74716 -16.50664 -16.22164 -15.67272 -15.35414 -15.26317 -14.97144 -14.90692 -14.67441 -14.55650 -14.37879 -14.28221 -14.20823 -13.94312 -13.89469 -13.66107 -13.59422 -13.33941 -12.93897 -12.83036 -12.61631 -12.50344 -12.36488 -12.23131 -12.08900 -11.88084 -11.87549 -11.63849 -11.35847 -10.85942 -10.62054 -10.56710 -9.83534 -9.76947 -9.28999 -8.17989 -6.44684 0.32794 0.48724 1.44011 1.47056 1.54494 2.35815 2.49956 2.58972 2.97046 3.00105 3.30131 3.61314 3.79023 3.89385 3.90358 3.96696 4.00911 4.06680 4.13770 4.20808 4.27524 4.31797 4.34851 4.39508 4.47701 4.51080 4.64275 4.68111 4.70329 4.75851 4.84193 4.93150 5.06617 5.08417 5.14520 5.24909 5.53892 5.56028 5.60038 5.65843 5.70960 6.08440 6.10128 6.22810 6.53646 6.71494 6.91047 7.25541 8.74235 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.022311 B = 0.001774 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.682546 B =15777.118146 C =16105.956291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.013 3.987 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.192 3.808 10 H 0.019 0.981 11 N -0.673 5.673 12 C 0.018 3.982 13 C 0.129 3.871 14 H 0.103 0.897 15 O -0.562 6.562 16 C -0.140 4.140 17 C 0.070 3.930 18 O -0.403 6.403 19 C 0.100 3.900 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.114 4.114 26 C 0.436 3.564 27 F -0.204 7.204 28 F -0.157 7.157 29 F -0.220 7.220 30 H 0.265 0.735 31 H 0.353 0.647 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.382 0.618 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.129 0.871 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 -23.447 -7.589 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.192 4.192 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.590 4.590 8 H 0.096 0.904 9 C 0.081 3.919 10 H 0.036 0.964 11 N -0.306 5.306 12 C -0.112 4.112 13 C 0.070 3.930 14 H 0.121 0.879 15 O -0.369 6.369 16 C -0.179 4.179 17 C -0.006 4.006 18 O -0.324 6.324 19 C 0.024 3.976 20 C -0.109 4.109 21 C -0.133 4.133 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.149 4.149 25 C -0.133 4.133 26 C 0.380 3.620 27 F -0.185 7.185 28 F -0.138 7.138 29 F -0.202 7.202 30 H 0.075 0.925 31 H 0.173 0.827 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.230 0.770 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.147 0.853 42 H 0.160 0.840 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.296 -23.345 -7.181 24.992 hybrid contribution -0.547 1.112 -0.276 1.270 sum 4.748 -22.232 -7.457 23.926 Atomic orbital electron populations 1.70498 1.07131 1.27756 1.45631 1.25939 0.95915 1.03432 0.93900 0.85360 0.78147 0.77581 0.79120 1.18610 1.20876 1.19915 1.21180 0.94034 0.89291 1.54538 0.90390 1.19858 0.91491 0.91995 0.88592 0.96393 1.60077 1.07377 1.03431 1.59682 1.22950 0.98610 0.91630 0.97973 1.21669 0.97538 0.90789 0.83029 0.87922 1.86534 1.38972 1.88215 1.23144 1.22090 0.98954 0.94431 1.02376 1.22407 0.95998 0.85508 0.96684 1.87910 1.40013 1.25118 1.79327 1.21400 0.91363 0.85225 0.99567 1.19822 1.00650 0.96025 0.94379 1.21315 0.96815 0.94526 1.00615 1.21473 0.99630 0.98629 0.95221 1.21555 0.98631 0.99401 0.94401 1.21471 0.97789 0.94541 1.01149 1.21314 0.99560 0.98642 0.93735 1.22699 0.79825 0.71851 0.87631 1.92984 1.74415 1.96076 1.55069 1.93368 1.69173 1.54896 1.96401 1.92949 1.81685 1.48550 1.97035 0.92486 0.82701 0.94408 0.91005 0.76977 0.90145 0.90760 0.92280 0.92432 0.91473 0.91602 0.85294 0.84025 0.83792 0.84008 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.65 9.50 21.45 0.20 -48.44 16 2 C 0.01 0.67 5.20 84.65 0.44 1.11 16 3 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -28.77 8.33 25.60 0.21 -28.56 16 8 H 0.08 3.91 7.62 -2.91 -0.02 3.89 16 9 C 0.19 9.35 2.26 44.17 0.10 9.45 16 10 H 0.02 0.97 7.80 -2.39 -0.02 0.95 16 11 N -0.67 -26.92 6.17 -495.46 -3.06 -29.98 16 12 C 0.02 0.58 5.03 86.30 0.43 1.02 16 13 C 0.13 3.30 3.14 30.59 0.10 3.39 16 14 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 15 O -0.56 -15.51 12.82 -148.98 -1.91 -17.42 16 16 C -0.14 -3.06 5.26 30.59 0.16 -2.89 16 17 C 0.07 1.42 5.84 71.98 0.42 1.84 16 18 O -0.40 -9.10 10.33 -148.98 -1.54 -10.64 16 19 C 0.10 1.79 6.06 71.24 0.43 2.22 16 20 C -0.11 -2.01 5.51 -19.87 -0.11 -2.12 16 21 C -0.11 -1.95 9.70 22.27 0.22 -1.74 16 22 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 23 C -0.12 -1.63 10.05 22.27 0.22 -1.40 16 24 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 25 C -0.11 -1.94 9.70 22.27 0.22 -1.72 16 26 C 0.44 22.15 2.81 71.98 0.20 22.35 16 27 F -0.20 -10.57 16.95 44.97 0.76 -9.81 16 28 F -0.16 -8.76 12.91 44.97 0.58 -8.18 16 29 F -0.22 -10.16 15.04 44.97 0.68 -9.49 16 30 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.35 13.32 8.22 -89.70 -0.74 12.58 16 32 H 0.04 1.21 8.05 -2.39 -0.02 1.19 16 33 H 0.07 2.49 6.03 -2.39 -0.01 2.47 16 34 H 0.38 8.86 9.05 -74.05 -0.67 8.19 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.18 7.82 -2.39 -0.02 1.16 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 40 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 41 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 42 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 44 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 45 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -63.36 385.48 0.85 -62.51 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -0.38 Total: 27.93 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 3.49 Total: -0.38 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -2.85 Total: -78.42 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -3.45 Total: -28.06 kcal Atomic # 9 Polarization: -29.50 SS G_CDS: 2.02 Total: -27.48 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -63.36 0.85 -62.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336780743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.324 kcal (2) G-P(sol) polarization free energy of solvation -63.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds