Wall clock time and date at job start Wed Apr 1 2020 04:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 11 11 O 1.45200 * 109.46946 * 180.02562 * 9 7 2 12 12 C 1.34237 * 116.99983 * 209.99989 * 11 9 7 13 13 O 1.20826 * 120.00047 * 0.02562 * 12 11 9 14 14 C 1.50697 * 119.99854 * 179.97438 * 12 11 9 15 15 O 1.42906 * 109.47070 * 180.02562 * 14 12 11 16 16 C 1.42896 * 114.00334 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47426 * 180.02562 * 16 15 14 18 18 N 1.46498 * 109.47320 * 64.99476 * 17 16 15 19 19 C 1.34779 * 120.00011 * 180.02562 * 18 17 16 20 20 O 1.21548 * 120.00039 * 0.02562 * 19 18 17 21 21 C 1.47842 * 119.99950 * 179.97438 * 19 18 17 22 22 C 1.39577 * 120.14665 * 359.73187 * 21 19 18 23 23 C 1.37956 * 119.85562 * 179.74454 * 22 21 19 24 24 C 1.38360 * 120.14459 * 0.52677 * 23 22 21 25 25 C 1.38357 * 120.28847 * 359.74246 * 24 23 22 26 26 C 1.37954 * 120.14898 * 359.97438 * 25 24 23 27 27 C 1.53008 * 109.47347 * 299.99866 * 9 7 2 28 28 C 1.52999 * 117.49893 * 248.75206 * 27 9 7 29 29 C 1.52998 * 117.49827 * 180.09059 * 27 9 7 30 30 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47338 * 299.99413 * 14 12 11 32 32 H 1.08994 * 109.47348 * 60.00218 * 14 12 11 33 33 H 1.09002 * 109.47182 * 300.00148 * 16 15 14 34 34 H 1.08994 * 109.47030 * 59.99707 * 16 15 14 35 35 H 1.08995 * 109.47639 * 185.00235 * 17 16 15 36 36 H 1.09010 * 109.46835 * 304.99820 * 17 16 15 37 37 H 0.97001 * 120.00074 * 0.02562 * 18 17 16 38 38 H 1.08010 * 120.06951 * 359.97438 * 22 21 19 39 39 H 1.07997 * 119.92800 * 180.27187 * 23 22 21 40 40 H 1.07993 * 119.85344 * 179.72616 * 24 23 22 41 41 H 1.08001 * 119.92436 * 180.02562 * 25 24 23 42 42 H 1.08006 * 120.07405 * 179.97438 * 26 25 24 43 43 H 1.08996 * 115.54647 * 34.41664 * 27 9 7 44 44 H 1.09005 * 117.49957 * 359.97438 * 28 27 9 45 45 H 1.09000 * 117.50113 * 145.01940 * 28 27 9 46 46 H 1.08999 * 117.49595 * 214.98168 * 29 27 9 47 47 H 1.09000 * 117.49853 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.6280 -2.5591 -0.8867 11 8 2.1943 -3.6028 0.0130 12 6 1.8057 -4.7407 -0.5838 13 8 0.7135 -4.8119 -1.0957 14 6 2.7320 -5.9289 -0.6163 15 8 2.0965 -7.0097 -1.3020 16 6 2.8941 -8.1922 -1.3889 17 6 2.1183 -9.2767 -2.1390 18 7 1.9018 -8.8526 -3.5244 19 6 1.2350 -9.6544 -4.3783 20 8 0.8129 -10.7291 -3.9987 21 6 1.0160 -9.2261 -5.7763 22 6 1.4936 -7.9896 -6.2136 23 6 1.2905 -7.5982 -7.5208 24 6 0.6055 -8.4236 -8.3948 25 6 0.1246 -9.6481 -7.9662 26 6 0.3260 -10.0540 -6.6632 27 6 0.3660 -2.5771 1.2516 28 6 0.7431 -3.6023 2.3229 29 6 -0.4833 -3.8362 1.4371 30 1 -0.4851 -0.8400 -0.0004 31 1 3.6508 -5.6591 -1.1370 32 1 2.9680 -6.2336 0.4032 33 1 3.8168 -7.9695 -1.9248 34 1 3.1327 -8.5439 -0.3853 35 1 2.6892 -10.2052 -2.1283 36 1 1.1556 -9.4366 -1.6533 37 1 2.2383 -7.9947 -3.8273 38 1 2.0243 -7.3422 -5.5310 39 1 1.6633 -6.6437 -7.8615 40 1 0.4453 -8.1107 -9.4159 41 1 -0.4089 -10.2879 -8.6535 42 1 -0.0503 -11.0099 -6.3298 43 1 -0.0571 -1.6305 1.5876 44 1 1.6213 -4.2216 2.1400 45 1 0.5676 -3.3304 3.3637 46 1 -1.4651 -3.7179 1.8956 47 1 -0.4120 -4.6087 0.6715 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345975192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:36 Heat of formation + Delta-G solvation = -112.389637 kcal Electronic energy + Delta-G solvation = -29592.570688 eV Core-core repulsion = 25320.724482 eV Total energy + Delta-G solvation = -4271.846206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.43874 -40.04459 -38.69025 -38.07348 -36.63767 -35.06163 -34.89305 -33.08462 -31.93059 -31.25096 -30.00918 -28.36832 -26.82465 -24.43300 -23.50252 -23.03994 -22.37079 -21.68349 -21.02705 -20.74317 -19.19122 -18.46557 -17.65177 -17.34239 -16.96210 -16.74984 -16.36028 -16.14602 -15.75437 -15.39966 -15.20620 -14.95065 -14.74472 -14.12303 -13.94092 -13.87553 -13.71149 -13.61073 -13.23769 -12.88997 -12.70509 -12.57838 -12.42424 -12.03145 -11.98333 -11.66068 -11.60515 -11.41066 -11.05762 -10.85119 -10.76033 -10.23362 -10.21875 -9.98135 -9.85912 -9.84939 -9.75325 -9.45981 -9.32548 -9.23014 -9.18671 -8.52855 -8.47370 -6.55934 -4.32671 0.54865 1.03833 2.61807 2.70704 2.72336 2.89681 3.34995 3.38387 3.54690 3.59178 3.93238 4.37525 4.39900 4.47761 4.60901 4.62030 4.67113 4.74364 4.81370 4.94991 5.03773 5.04170 5.12158 5.15543 5.15895 5.25632 5.38188 5.45477 5.57344 5.62509 5.64687 5.81781 5.86252 5.97588 6.05535 6.10692 6.12402 6.25877 6.42032 6.54157 6.56120 6.76424 6.80025 6.88109 7.14188 7.22805 7.35824 7.83889 7.95187 8.17170 8.51039 8.63752 9.37416 10.80651 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011930 B = 0.002222 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.366211 B =12600.620697 C =13995.007610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.026 3.974 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.599 4.599 8 H 0.065 0.935 9 C 0.242 3.758 10 H 0.043 0.957 11 O -0.343 6.343 12 C 0.449 3.551 13 O -0.494 6.494 14 C 0.069 3.931 15 O -0.364 6.364 16 C 0.047 3.953 17 C 0.124 3.876 18 N -0.719 5.719 19 C 0.560 3.440 20 O -0.541 6.541 21 C -0.135 4.135 22 C -0.083 4.083 23 C -0.127 4.127 24 C -0.095 4.095 25 C -0.130 4.130 26 C -0.061 4.061 27 C -0.147 4.147 28 C -0.181 4.181 29 C -0.207 4.207 30 H 0.278 0.722 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.405 0.595 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.135 0.865 43 H 0.123 0.877 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.998 -17.975 -10.072 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.908 3.092 4 H -0.212 1.212 5 H -0.207 1.207 6 H -0.212 1.212 7 C -0.637 4.637 8 H 0.083 0.917 9 C 0.189 3.811 10 H 0.061 0.939 11 O -0.260 6.260 12 C 0.290 3.710 13 O -0.383 6.383 14 C -0.008 4.008 15 O -0.283 6.283 16 C -0.030 4.030 17 C 0.001 3.999 18 N -0.372 5.372 19 C 0.347 3.653 20 O -0.420 6.420 21 C -0.138 4.138 22 C -0.102 4.102 23 C -0.144 4.144 24 C -0.113 4.113 25 C -0.148 4.148 26 C -0.080 4.080 27 C -0.166 4.166 28 C -0.218 4.218 29 C -0.244 4.244 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.241 0.759 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.153 0.847 43 H 0.141 0.859 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.973 -17.054 -9.969 20.638 hybrid contribution 0.430 -1.194 0.101 1.273 sum 6.404 -18.248 -9.868 21.712 Atomic orbital electron populations 1.70761 1.06807 1.31605 1.44951 1.25909 0.96373 1.02422 0.93181 0.83371 0.74588 0.74246 0.77001 1.21168 1.20712 1.21169 1.21808 0.95302 0.89334 1.57251 0.91665 1.20245 0.86440 0.81336 0.93101 0.93950 1.86487 1.49020 1.21433 1.69055 1.22891 0.86670 0.85028 0.76412 1.90625 1.22249 1.83102 1.42280 1.21729 0.94502 0.85655 0.98947 1.88018 1.41799 1.21100 1.77382 1.22853 0.94028 0.85609 1.00521 1.21405 1.01736 0.95910 0.80889 1.45831 1.57874 1.22330 1.11152 1.18275 0.77637 0.84063 0.85299 1.90763 1.50334 1.22490 1.78368 1.19945 1.03573 0.96452 0.93880 1.21381 0.97721 0.94725 0.96385 1.21167 0.99606 1.00271 0.93405 1.21411 0.96019 0.93994 0.99888 1.21175 1.00817 0.96956 0.95855 1.21289 0.94846 0.99269 0.92577 1.23256 1.00481 0.93981 0.98889 1.22738 0.98549 1.04761 0.95730 1.23212 0.94812 1.02764 1.03604 0.91041 0.89247 0.89305 0.92075 0.90874 0.89469 0.90064 0.75894 0.85485 0.85171 0.85502 0.85291 0.84670 0.85921 0.89639 0.89971 0.90076 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.24 12.84 55.43 0.71 -25.52 16 2 C 0.03 0.71 5.20 -17.82 -0.09 0.62 16 3 Si 1.08 24.07 29.90 -169.99 -5.08 18.98 16 4 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.29 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.60 -16.46 8.90 -34.44 -0.31 -16.76 16 8 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.24 6.20 2.12 -27.88 -0.06 6.15 16 10 H 0.04 1.21 7.03 -51.93 -0.36 0.85 16 11 O -0.34 -7.65 8.38 -39.28 -0.33 -7.98 16 12 C 0.45 8.77 6.98 36.00 0.25 9.02 16 13 O -0.49 -11.25 13.55 -25.48 -0.35 -11.60 16 14 C 0.07 0.91 6.53 36.00 0.24 1.15 16 15 O -0.36 -4.78 9.82 -55.18 -0.54 -5.32 16 16 C 0.05 0.39 6.07 37.16 0.23 0.62 16 17 C 0.12 1.18 6.06 -4.04 -0.02 1.16 16 18 N -0.72 -7.59 5.45 -61.25 -0.33 -7.92 16 19 C 0.56 7.02 7.77 -12.33 -0.10 6.92 16 20 O -0.54 -8.37 16.35 5.32 0.09 -8.29 16 21 C -0.14 -1.48 5.87 -104.97 -0.62 -2.10 16 22 C -0.08 -0.78 9.54 -39.19 -0.37 -1.15 16 23 C -0.13 -1.03 10.03 -39.64 -0.40 -1.43 16 24 C -0.09 -0.71 10.04 -39.49 -0.40 -1.11 16 25 C -0.13 -1.04 10.03 -39.64 -0.40 -1.44 16 26 C -0.06 -0.61 9.60 -39.19 -0.38 -0.99 16 27 C -0.15 -3.52 4.66 -90.62 -0.42 -3.94 16 28 C -0.18 -3.65 9.80 -26.69 -0.26 -3.91 16 29 C -0.21 -4.36 9.85 -26.69 -0.26 -4.63 16 30 H 0.28 8.06 5.71 -40.82 -0.23 7.83 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.40 3.72 6.51 -40.82 -0.27 3.46 16 38 H 0.13 0.99 6.41 -52.48 -0.34 0.66 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.14 1.34 7.65 -52.48 -0.40 0.94 16 43 H 0.12 3.19 6.15 -51.93 -0.32 2.87 16 44 H 0.09 1.66 6.91 -51.93 -0.36 1.30 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 47 H 0.10 2.14 5.37 -51.93 -0.28 1.86 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -34.92 395.52 -9.66 -44.58 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.41 Total: 8.95 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.37 Total: -11.83 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.38 Total: -33.45 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -1.13 Total: -33.19 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.08 Total: 18.98 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.92 -9.66 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.811 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds