Wall clock time and date at job start Wed Apr 1 2020 05:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99723 * 2 1 4 4 H 1.48499 * 109.46855 * 264.95689 * 3 2 1 5 5 H 1.48498 * 109.47124 * 24.95818 * 3 2 1 6 6 H 1.48500 * 109.46816 * 144.95976 * 3 2 1 7 7 C 1.37872 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00560 * 4.37476 * 7 2 1 9 9 C 1.50701 * 120.00023 * 184.38157 * 7 2 1 10 10 H 1.09001 * 109.46980 * 32.19443 * 9 7 2 11 11 O 1.45205 * 109.47048 * 272.20277 * 9 7 2 12 12 C 1.34225 * 117.00498 * 149.99711 * 11 9 7 13 13 O 1.20829 * 119.99706 * 0.02562 * 12 11 9 14 14 C 1.50697 * 120.00333 * 179.97438 * 12 11 9 15 15 C 1.53002 * 110.43377 * 181.84236 * 14 12 11 16 16 C 1.54889 * 110.75814 * 56.76599 * 15 14 12 17 17 C 1.54464 * 104.10065 * 203.89150 * 16 15 14 18 18 C 1.53873 * 106.68349 * 23.34271 * 17 16 15 19 19 C 1.54268 * 106.60066 * 0.15578 * 18 17 16 20 20 C 1.54628 * 110.48429 * 304.52579 * 14 12 11 21 21 C 1.54483 * 101.76563 * 143.47690 * 20 14 12 22 22 N 1.46769 * 105.47041 * 334.58253 * 21 20 14 23 23 C 1.34417 * 111.30148 * 17.01822 * 22 21 20 24 24 O 1.21282 * 124.94611 * 179.63053 * 23 22 21 25 25 C 1.50700 * 109.47642 * 152.20031 * 9 7 2 26 26 C 1.34509 * 125.78849 * 263.27905 * 25 9 7 27 27 C 1.41377 * 106.84226 * 180.02562 * 26 25 9 28 28 C 1.34513 * 106.83923 * 0.22874 * 27 26 25 29 29 O 1.34295 * 125.78847 * 83.30020 * 25 9 7 30 30 H 0.97006 * 120.00241 * 0.02562 * 1 2 3 31 31 H 1.09006 * 110.66719 * 180.02562 * 15 14 12 32 32 H 1.09001 * 110.48625 * 322.42405 * 16 15 14 33 33 H 1.09003 * 110.48211 * 85.06065 * 16 15 14 34 34 H 1.08994 * 109.85820 * 264.10586 * 17 16 15 35 35 H 1.09001 * 110.16234 * 142.74761 * 17 16 15 36 36 H 1.09008 * 110.03414 * 240.87083 * 18 17 16 37 37 H 1.09000 * 110.03369 * 119.44553 * 18 17 16 38 38 H 1.09004 * 110.48857 * 217.70970 * 19 18 17 39 39 H 1.09000 * 110.48396 * 95.06696 * 19 18 17 40 40 H 1.08995 * 110.96907 * 261.59332 * 20 14 12 41 41 H 1.08998 * 110.96999 * 25.35887 * 20 14 12 42 42 H 1.08998 * 110.24718 * 215.58958 * 21 20 14 43 43 H 1.09000 * 110.32165 * 93.61798 * 21 20 14 44 44 H 0.97000 * 124.35033 * 197.03791 * 22 21 20 45 45 H 1.08007 * 126.57928 * 0.05457 * 26 25 9 46 46 H 1.08004 * 126.58667 * 179.97438 * 27 26 25 47 47 H 1.07999 * 125.79091 * 179.76682 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6031 1.9849 -1.3947 5 1 1.3973 2.6811 0.5908 6 1 3.4893 1.4733 0.8039 7 6 2.0045 -1.1940 0.0005 8 1 1.4669 -2.1280 -0.0704 9 6 3.5082 -1.1959 0.1002 10 1 3.8334 -0.3480 0.7031 11 8 4.0816 -1.0923 -1.2298 12 6 5.2714 -0.4800 -1.3345 13 8 5.8161 -0.0454 -0.3474 14 6 5.9285 -0.3356 -2.6830 15 6 7.2889 0.3507 -2.5436 16 6 8.2007 -0.4315 -1.5659 17 6 9.2054 0.6271 -1.0599 18 6 8.5323 1.9985 -1.2439 19 6 7.1403 1.7283 -1.8514 20 6 6.0830 -1.7170 -3.3603 21 6 5.8264 -1.3709 -4.8439 22 7 4.9939 -0.1622 -4.8255 23 6 5.0371 0.4423 -3.6258 24 8 4.4468 1.4626 -3.3403 25 6 3.9673 -2.4774 0.7467 26 6 4.2643 -2.6393 2.0486 27 6 4.6481 -3.9896 2.2164 28 6 4.5676 -4.5708 1.0060 29 8 4.1497 -3.6514 0.1207 30 1 -0.4851 0.8401 -0.0004 31 1 7.7675 0.4575 -3.5171 32 1 7.6173 -0.8292 -0.7355 33 1 8.7194 -1.2353 -2.0884 34 1 10.1216 0.5789 -1.6483 35 1 9.4292 0.4593 -0.0064 36 1 9.1220 2.6160 -1.9216 37 1 8.4288 2.4960 -0.2796 38 1 6.8870 2.4969 -2.5817 39 1 6.3845 1.6817 -1.0674 40 1 7.0899 -2.1099 -3.2200 41 1 5.3366 -2.4192 -2.9889 42 1 5.2961 -2.1866 -5.3353 43 1 6.7685 -1.1721 -5.3546 44 1 4.4785 0.1589 -5.5819 45 1 4.2179 -1.8829 2.8182 46 1 4.9520 -4.4626 3.1386 47 1 4.7975 -5.6025 0.7843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345977721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:14 Heat of formation + Delta-G solvation = -103.299183 kcal Electronic energy + Delta-G solvation = -33304.291681 eV Core-core repulsion = 29032.839666 eV Total energy + Delta-G solvation = -4271.452014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.87222 -41.30090 -39.02147 -37.64441 -36.23455 -35.53801 -33.13715 -32.31296 -32.20418 -30.47295 -28.92350 -28.32861 -27.24208 -26.45775 -23.32712 -22.37725 -21.92889 -21.09507 -20.75294 -19.87168 -19.71985 -19.07181 -17.51742 -17.38389 -16.94761 -16.67734 -16.17403 -15.74566 -15.36073 -15.18081 -15.02151 -14.46885 -14.36099 -14.08794 -13.76361 -13.67308 -13.17663 -13.09957 -12.90604 -12.64567 -12.38697 -12.15586 -12.12370 -12.07343 -11.86283 -11.57797 -11.37833 -11.19935 -11.07307 -10.88393 -10.85422 -10.83400 -10.48946 -10.20721 -10.00985 -9.69340 -9.62928 -9.55882 -9.39726 -9.25579 -9.06330 -8.89059 -7.76441 -6.46846 -4.57952 2.40331 2.58817 2.79877 3.15283 3.27564 3.32858 3.37201 3.44744 3.53960 3.73992 4.21250 4.28742 4.42684 4.51148 4.80829 4.85271 4.90519 5.01944 5.06857 5.28376 5.34982 5.39964 5.50013 5.58913 5.60540 5.65801 5.71184 5.78215 5.81357 5.86440 5.92980 6.00052 6.04433 6.11667 6.22483 6.25337 6.42272 6.45115 6.52382 6.58372 6.70048 6.73814 6.81786 7.01794 7.10301 7.12302 7.44336 7.86346 8.07079 8.32753 8.58959 8.60489 9.09540 10.60609 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009003 B = 0.005830 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.448850 B = 4801.656489 C = 5737.021398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.097 3.903 3 Si 0.852 3.148 4 H -0.244 1.244 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.505 4.505 8 H 0.089 0.911 9 C 0.246 3.754 10 H 0.089 0.911 11 O -0.350 6.350 12 C 0.472 3.528 13 O -0.502 6.502 14 C -0.089 4.089 15 C -0.060 4.060 16 C -0.124 4.124 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.129 4.129 20 C -0.125 4.125 21 C 0.106 3.894 22 N -0.730 5.730 23 C 0.539 3.461 24 O -0.505 6.505 25 C 0.034 3.966 26 C -0.227 4.227 27 C -0.209 4.209 28 C -0.072 4.072 29 O -0.169 6.169 30 H 0.276 0.724 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.413 0.587 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.452 -4.135 -7.472 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.113 4.113 3 Si 0.676 3.324 4 H -0.168 1.168 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.540 4.540 8 H 0.107 0.893 9 C 0.195 3.805 10 H 0.106 0.894 11 O -0.267 6.267 12 C 0.314 3.686 13 O -0.391 6.391 14 C -0.094 4.094 15 C -0.079 4.079 16 C -0.161 4.161 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.166 4.166 20 C -0.163 4.163 21 C -0.019 4.019 22 N -0.387 5.387 23 C 0.323 3.677 24 O -0.378 6.378 25 C -0.017 4.017 26 C -0.246 4.246 27 C -0.228 4.228 28 C -0.140 4.140 29 O -0.064 6.064 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.252 0.748 45 H 0.160 0.840 46 H 0.158 0.842 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 16.079 -3.453 -7.192 17.950 hybrid contribution 0.073 0.782 -0.048 0.787 sum 16.153 -2.671 -7.240 17.902 Atomic orbital electron populations 1.69857 1.06421 1.28456 1.44362 1.25069 0.94918 0.99530 0.91771 0.87164 0.80630 0.82744 0.81855 1.16757 1.20452 1.17819 1.20789 0.85752 0.95803 1.51656 0.89265 1.19898 0.93599 0.87604 0.79435 0.89410 1.87159 1.30850 1.68632 1.40016 1.22620 0.81160 0.75307 0.89519 1.90512 1.63653 1.45918 1.39055 1.21394 0.96892 0.98316 0.92847 1.21845 0.90443 0.96031 0.99560 1.22649 0.96869 0.97176 0.99398 1.22040 0.97613 0.94743 1.00918 1.22031 0.95931 0.96916 1.00583 1.22660 0.98459 0.94787 1.00698 1.22814 1.04924 0.94906 0.93657 1.22050 0.95099 0.87488 0.97218 1.46053 1.50253 1.28085 1.14319 1.20126 0.80440 0.84195 0.82919 1.90823 1.45322 1.23594 1.78106 1.23245 0.99653 0.86427 0.92417 1.21383 1.09396 0.97476 0.96348 1.21669 1.07794 0.95018 0.98368 1.23814 1.06617 0.94931 0.88633 1.84061 1.65799 1.18152 1.38436 0.91413 0.89788 0.89131 0.92185 0.92525 0.91906 0.92590 0.91953 0.92309 0.88760 0.88392 0.88056 0.89687 0.90946 0.74838 0.84020 0.84232 0.79024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.31 13.96 55.43 0.77 -24.54 16 2 C 0.10 2.79 5.47 -17.82 -0.10 2.69 16 3 Si 0.85 22.20 27.48 -169.99 -4.67 17.53 16 4 H -0.24 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.25 -6.53 6.10 56.52 0.34 -6.18 16 7 C -0.51 -14.39 9.23 -34.44 -0.32 -14.71 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 C 0.25 6.23 1.77 -29.03 -0.05 6.18 16 10 H 0.09 2.32 4.54 -51.93 -0.24 2.08 16 11 O -0.35 -8.40 9.14 -41.80 -0.38 -8.78 16 12 C 0.47 9.98 5.71 36.00 0.21 10.18 16 13 O -0.50 -11.14 10.79 -18.75 -0.20 -11.34 16 14 C -0.09 -1.47 0.35 -155.67 -0.05 -1.52 16 15 C -0.06 -0.85 2.22 -88.63 -0.20 -1.05 16 16 C -0.12 -1.63 5.28 -24.97 -0.13 -1.76 16 17 C -0.12 -1.40 6.81 -25.51 -0.17 -1.57 16 18 C -0.12 -1.55 6.80 -25.61 -0.17 -1.72 16 19 C -0.13 -2.09 5.25 -25.07 -0.13 -2.22 16 20 C -0.13 -1.53 6.07 -25.10 -0.15 -1.68 16 21 C 0.11 1.00 7.78 -3.12 -0.02 0.98 16 22 N -0.73 -9.41 6.24 -59.20 -0.37 -9.78 16 23 C 0.54 9.66 6.81 -10.86 -0.07 9.58 16 24 O -0.51 -11.36 17.52 5.56 0.10 -11.26 16 25 C 0.03 0.78 6.17 -35.63 -0.22 0.56 16 26 C -0.23 -4.71 10.81 -39.71 -0.43 -5.14 16 27 C -0.21 -3.62 10.91 -39.71 -0.43 -4.05 16 28 C -0.07 -1.22 12.09 29.42 0.36 -0.86 16 29 O -0.17 -3.56 10.64 2.93 0.03 -3.53 16 30 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.47 5.52 -51.93 -0.29 1.19 16 33 H 0.06 0.63 7.60 -51.93 -0.39 0.24 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.90 5.39 -51.93 -0.28 1.62 16 40 H 0.10 0.92 6.86 -51.93 -0.36 0.57 16 41 H 0.10 1.40 7.55 -51.93 -0.39 1.01 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.41 4.49 8.96 -40.82 -0.37 4.12 16 45 H 0.14 2.78 8.06 -52.48 -0.42 2.36 16 46 H 0.14 1.94 8.06 -52.48 -0.42 1.51 16 47 H 0.19 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 377.68 15.07 5.69 5.69 Total: -1.00 -34.88 377.68 -7.71 -42.59 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -6.58 Total: 9.55 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.10 Total: -6.13 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.40 Total: -34.32 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.46 Total: -34.92 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.88 -7.71 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.708 kcal (2) G-P(sol) polarization free energy of solvation -34.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds