Wall clock time and date at job start Wed Apr 1 2020 05:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99723 * 2 1 4 4 H 1.48499 * 109.46855 * 264.95689 * 3 2 1 5 5 H 1.48498 * 109.47124 * 24.95818 * 3 2 1 6 6 H 1.48500 * 109.46816 * 144.95976 * 3 2 1 7 7 C 1.37872 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00560 * 4.37476 * 7 2 1 9 9 C 1.50701 * 120.00023 * 184.38157 * 7 2 1 10 10 H 1.09001 * 109.46980 * 32.19443 * 9 7 2 11 11 O 1.45205 * 109.47048 * 272.20277 * 9 7 2 12 12 C 1.34225 * 117.00498 * 149.99711 * 11 9 7 13 13 O 1.20829 * 119.99706 * 0.02562 * 12 11 9 14 14 C 1.50697 * 120.00333 * 179.97438 * 12 11 9 15 15 C 1.53002 * 110.43377 * 181.84236 * 14 12 11 16 16 C 1.54889 * 110.75814 * 56.76599 * 15 14 12 17 17 C 1.54464 * 104.10065 * 203.89150 * 16 15 14 18 18 C 1.53873 * 106.68349 * 23.34271 * 17 16 15 19 19 C 1.54268 * 106.60066 * 0.15578 * 18 17 16 20 20 C 1.54628 * 110.48429 * 304.52579 * 14 12 11 21 21 C 1.54483 * 101.76563 * 143.47690 * 20 14 12 22 22 N 1.46769 * 105.47041 * 334.58253 * 21 20 14 23 23 C 1.34417 * 111.30148 * 17.01822 * 22 21 20 24 24 O 1.21282 * 124.94611 * 179.63053 * 23 22 21 25 25 C 1.50700 * 109.47642 * 152.20031 * 9 7 2 26 26 C 1.34509 * 125.78849 * 263.27905 * 25 9 7 27 27 C 1.41377 * 106.84226 * 180.02562 * 26 25 9 28 28 C 1.34513 * 106.83923 * 0.22874 * 27 26 25 29 29 O 1.34295 * 125.78847 * 83.30020 * 25 9 7 30 30 H 0.97006 * 120.00241 * 0.02562 * 1 2 3 31 31 H 1.09006 * 110.66719 * 180.02562 * 15 14 12 32 32 H 1.09001 * 110.48625 * 322.42405 * 16 15 14 33 33 H 1.09003 * 110.48211 * 85.06065 * 16 15 14 34 34 H 1.08994 * 109.85820 * 264.10586 * 17 16 15 35 35 H 1.09001 * 110.16234 * 142.74761 * 17 16 15 36 36 H 1.09008 * 110.03414 * 240.87083 * 18 17 16 37 37 H 1.09000 * 110.03369 * 119.44553 * 18 17 16 38 38 H 1.09004 * 110.48857 * 217.70970 * 19 18 17 39 39 H 1.09000 * 110.48396 * 95.06696 * 19 18 17 40 40 H 1.08995 * 110.96907 * 261.59332 * 20 14 12 41 41 H 1.08998 * 110.96999 * 25.35887 * 20 14 12 42 42 H 1.08998 * 110.24718 * 215.58958 * 21 20 14 43 43 H 1.09000 * 110.32165 * 93.61798 * 21 20 14 44 44 H 0.97000 * 124.35033 * 197.03791 * 22 21 20 45 45 H 1.08007 * 126.57928 * 0.05457 * 26 25 9 46 46 H 1.08004 * 126.58667 * 179.97438 * 27 26 25 47 47 H 1.07999 * 125.79091 * 179.76682 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6031 1.9849 -1.3947 5 1 1.3973 2.6811 0.5908 6 1 3.4893 1.4733 0.8039 7 6 2.0045 -1.1940 0.0005 8 1 1.4669 -2.1280 -0.0704 9 6 3.5082 -1.1959 0.1002 10 1 3.8334 -0.3480 0.7031 11 8 4.0816 -1.0923 -1.2298 12 6 5.2714 -0.4800 -1.3345 13 8 5.8161 -0.0454 -0.3474 14 6 5.9285 -0.3356 -2.6830 15 6 7.2889 0.3507 -2.5436 16 6 8.2007 -0.4315 -1.5659 17 6 9.2054 0.6271 -1.0599 18 6 8.5323 1.9985 -1.2439 19 6 7.1403 1.7283 -1.8514 20 6 6.0830 -1.7170 -3.3603 21 6 5.8264 -1.3709 -4.8439 22 7 4.9939 -0.1622 -4.8255 23 6 5.0371 0.4423 -3.6258 24 8 4.4468 1.4626 -3.3403 25 6 3.9673 -2.4774 0.7467 26 6 4.2643 -2.6393 2.0486 27 6 4.6481 -3.9896 2.2164 28 6 4.5676 -4.5708 1.0060 29 8 4.1497 -3.6514 0.1207 30 1 -0.4851 0.8401 -0.0004 31 1 7.7675 0.4575 -3.5171 32 1 7.6173 -0.8292 -0.7355 33 1 8.7194 -1.2353 -2.0884 34 1 10.1216 0.5789 -1.6483 35 1 9.4292 0.4593 -0.0064 36 1 9.1220 2.6160 -1.9216 37 1 8.4288 2.4960 -0.2796 38 1 6.8870 2.4969 -2.5817 39 1 6.3845 1.6817 -1.0674 40 1 7.0899 -2.1099 -3.2200 41 1 5.3366 -2.4192 -2.9889 42 1 5.2961 -2.1866 -5.3353 43 1 6.7685 -1.1721 -5.3546 44 1 4.4785 0.1589 -5.5819 45 1 4.2179 -1.8829 2.8182 46 1 4.9520 -4.4626 3.1386 47 1 4.7975 -5.6025 0.7843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345977721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:13 Heat of formation + Delta-G solvation = -127.904592 kcal Electronic energy + Delta-G solvation = -33305.358651 eV Core-core repulsion = 29032.839666 eV Total energy + Delta-G solvation = -4272.518985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.43015 -42.64687 -40.58878 -38.95580 -37.55833 -37.18026 -35.24470 -33.91731 -33.42742 -32.22223 -29.98461 -29.38137 -28.98071 -27.70846 -25.14012 -23.73886 -23.14062 -22.61336 -21.97258 -21.30803 -20.89013 -20.62758 -19.51902 -18.83250 -18.47864 -18.23531 -17.47071 -17.13302 -16.94756 -16.70970 -16.50688 -16.09283 -15.58225 -15.45841 -15.22481 -14.96657 -14.75725 -14.36051 -14.31114 -14.15913 -13.91946 -13.76683 -13.68497 -13.38527 -13.23693 -13.12935 -12.94960 -12.73547 -12.38078 -12.14715 -12.10681 -12.10067 -11.94704 -11.84290 -11.63933 -11.59274 -11.23124 -11.05650 -10.90416 -10.85701 -10.77118 -10.12683 -9.33792 -8.71237 -6.83846 0.83910 1.03454 1.10304 1.17278 1.27001 1.37271 1.68944 1.86680 2.00812 2.20723 2.34227 2.80798 3.12006 3.34363 3.39618 3.71379 3.79750 3.82235 3.96734 4.09549 4.14387 4.19550 4.24934 4.38679 4.42299 4.53590 4.55849 4.64208 4.67003 4.77681 4.80788 4.91939 4.92723 4.97159 4.99949 5.05551 5.06639 5.10917 5.20393 5.22339 5.32938 5.39562 5.55863 5.64975 5.70088 5.76152 5.90246 5.94395 6.27619 6.31667 6.84123 6.85984 7.11577 8.41728 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009003 B = 0.005830 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.448850 B = 4801.656489 C = 5737.021398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.258 1.258 6 H -0.259 1.259 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.257 3.743 10 H 0.067 0.933 11 O -0.365 6.365 12 C 0.461 3.539 13 O -0.518 6.518 14 C -0.088 4.088 15 C -0.054 4.054 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.136 4.136 20 C -0.123 4.123 21 C 0.106 3.894 22 N -0.714 5.714 23 C 0.523 3.477 24 O -0.569 6.569 25 C -0.014 4.014 26 C -0.230 4.230 27 C -0.215 4.215 28 C -0.051 4.051 29 O -0.186 6.186 30 H 0.281 0.719 31 H 0.125 0.875 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.136 0.864 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.423 0.577 45 H 0.142 0.858 46 H 0.180 0.820 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.465 -6.535 -9.254 23.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.191 1.191 5 H -0.182 1.182 6 H -0.184 1.184 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.205 3.795 10 H 0.085 0.915 11 O -0.282 6.282 12 C 0.305 3.695 13 O -0.407 6.407 14 C -0.093 4.093 15 C -0.073 4.073 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.152 4.152 19 C -0.174 4.174 20 C -0.160 4.160 21 C -0.017 4.017 22 N -0.369 5.369 23 C 0.308 3.692 24 O -0.447 6.447 25 C -0.064 4.064 26 C -0.249 4.249 27 C -0.233 4.233 28 C -0.117 4.117 29 O -0.083 6.083 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.154 0.846 41 H 0.097 0.903 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.263 0.737 45 H 0.160 0.840 46 H 0.197 0.803 47 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 20.109 -5.885 -9.002 22.804 hybrid contribution -1.059 1.384 0.499 1.812 sum 19.050 -4.502 -8.503 21.342 Atomic orbital electron populations 1.69905 1.07178 1.29293 1.46630 1.25532 0.95411 1.01471 0.91868 0.86420 0.79752 0.80923 0.80365 1.19115 1.18228 1.18394 1.20833 0.87844 0.94442 1.52107 0.92461 1.19321 0.91827 0.88890 0.79429 0.91505 1.86984 1.32966 1.69733 1.38480 1.23549 0.80070 0.74184 0.91725 1.90509 1.63730 1.46035 1.40461 1.21574 0.97062 1.01188 0.89514 1.21993 0.89469 0.94304 1.01515 1.22621 0.96599 0.98353 0.98244 1.22054 0.98442 0.93160 1.01252 1.22042 0.94539 0.98374 1.00259 1.22601 0.98863 0.96474 0.99421 1.22972 1.06535 0.91712 0.94790 1.22465 0.96940 0.86600 0.95648 1.46119 1.49613 1.28282 1.12930 1.20535 0.80295 0.83812 0.84560 1.90786 1.47949 1.26429 1.79531 1.22795 1.03673 0.86732 0.93221 1.21732 1.08114 0.99600 0.95459 1.22071 1.07744 0.93154 1.00377 1.24962 1.03092 0.95955 0.87735 1.84020 1.66405 1.18142 1.39697 0.90859 0.85738 0.92895 0.88218 0.89047 0.92553 0.90034 0.93348 0.93219 0.93764 0.84607 0.90274 0.86891 0.86323 0.73676 0.84040 0.80302 0.73544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.49 13.96 21.44 0.30 -55.19 16 2 C 0.06 3.86 5.47 84.65 0.46 4.32 16 3 Si 0.90 49.26 27.48 68.60 1.89 51.14 16 4 H -0.27 -15.47 7.11 99.48 0.71 -14.76 16 5 H -0.26 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -14.17 6.10 99.48 0.61 -13.56 16 7 C -0.52 -31.42 9.23 25.60 0.24 -31.18 16 8 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 9 C 0.26 13.86 1.77 29.10 0.05 13.91 16 10 H 0.07 3.81 4.54 -2.39 -0.01 3.80 16 11 O -0.36 -18.47 9.14 -48.93 -0.45 -18.92 16 12 C 0.46 20.29 5.71 71.24 0.41 20.69 16 13 O -0.52 -24.32 10.79 21.95 0.24 -24.08 16 14 C -0.09 -2.84 0.35 -52.93 -0.02 -2.86 16 15 C -0.05 -1.42 2.22 -9.50 -0.02 -1.44 16 16 C -0.12 -2.85 5.28 31.74 0.17 -2.68 16 17 C -0.11 -2.38 6.81 31.39 0.21 -2.16 16 18 C -0.11 -2.90 6.80 31.32 0.21 -2.68 16 19 C -0.14 -4.47 5.25 31.67 0.17 -4.31 16 20 C -0.12 -2.60 6.07 31.65 0.19 -2.41 16 21 C 0.11 1.50 7.78 86.83 0.68 2.18 16 22 N -0.71 -16.90 6.24 -459.79 -2.87 -19.77 16 23 C 0.52 18.79 6.81 87.90 0.60 19.39 16 24 O -0.57 -26.90 17.52 -3.04 -0.05 -26.95 16 25 C -0.01 -0.65 6.17 24.83 0.15 -0.50 16 26 C -0.23 -9.64 10.81 22.19 0.24 -9.40 16 27 C -0.21 -6.91 10.91 22.19 0.24 -6.67 16 28 C -0.05 -1.56 12.09 66.97 0.81 -0.75 16 29 O -0.19 -7.82 10.64 0.23 0.00 -7.82 16 30 H 0.28 16.17 8.31 -92.70 -0.77 15.40 16 31 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.05 1.68 5.52 -2.39 -0.01 1.66 16 33 H 0.10 1.55 7.60 -2.39 -0.02 1.53 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.04 1.90 5.39 -2.39 -0.01 1.89 16 40 H 0.14 1.83 6.86 -2.39 -0.02 1.82 16 41 H 0.08 2.07 7.55 -2.39 -0.02 2.06 16 42 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.42 8.40 8.96 -92.71 -0.83 7.56 16 45 H 0.14 5.75 8.06 -2.91 -0.02 5.72 16 46 H 0.18 4.23 8.06 -2.91 -0.02 4.21 16 47 H 0.25 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -87.58 377.68 3.92 -83.65 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.08 Total: 24.48 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.79 Total: -6.55 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -2.57 Total: -74.96 kcal Atomic # 8 Polarization: -77.51 SS G_CDS: -0.26 Total: -77.77 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 1.89 Total: 51.14 kcal Total: -87.58 3.92 -83.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.251 kcal (2) G-P(sol) polarization free energy of solvation -87.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds