Wall clock time and date at job start Wed Apr 1 2020 05:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99681 * 2 1 4 4 H 1.48500 * 109.46915 * 269.99920 * 3 2 1 5 5 H 1.48505 * 109.47173 * 29.99916 * 3 2 1 6 6 H 1.48503 * 109.47038 * 149.99832 * 3 2 1 7 7 C 1.37875 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99860 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00087 * 179.97438 * 7 2 1 10 10 H 1.08998 * 109.47251 * 179.97438 * 9 7 2 11 11 O 1.45207 * 109.46842 * 60.00008 * 9 7 2 12 12 C 1.34229 * 116.99890 * 89.99885 * 11 9 7 13 13 O 1.20831 * 119.99830 * 359.97438 * 12 11 9 14 14 C 1.50700 * 120.00266 * 179.97438 * 12 11 9 15 15 C 1.52997 * 110.43550 * 180.02562 * 14 12 11 16 16 C 1.54891 * 110.75763 * 305.97052 * 15 14 12 17 17 C 1.54267 * 104.19324 * 156.25900 * 16 15 14 18 18 C 1.53876 * 106.59870 * 336.39035 * 17 16 15 19 19 C 1.54261 * 106.59990 * 0.02562 * 18 17 16 20 20 C 1.54631 * 110.47941 * 57.45960 * 14 12 11 21 21 C 1.54684 * 101.67155 * 265.90393 * 20 14 12 22 22 N 1.46771 * 105.53643 * 334.74655 * 21 20 14 23 23 C 1.34421 * 111.29749 * 16.91973 * 22 21 20 24 24 O 1.21280 * 124.94189 * 179.55838 * 23 22 21 25 25 C 1.50695 * 109.47402 * 300.00298 * 9 7 2 26 26 C 1.34517 * 125.78606 * 265.00271 * 25 9 7 27 27 C 1.41381 * 106.83798 * 179.97438 * 26 25 9 28 28 C 1.34511 * 106.84409 * 359.97438 * 27 26 25 29 29 O 1.34301 * 125.79120 * 84.68760 * 25 9 7 30 30 H 0.97005 * 120.00649 * 0.02562 * 1 2 3 31 31 H 1.09005 * 110.81411 * 182.63979 * 15 14 12 32 32 H 1.09004 * 110.48613 * 37.58272 * 16 15 14 33 33 H 1.08994 * 110.48745 * 274.93690 * 16 15 14 34 34 H 1.08995 * 110.03032 * 217.10762 * 17 16 15 35 35 H 1.08998 * 110.03405 * 95.67701 * 17 16 15 36 36 H 1.08998 * 110.02768 * 119.28860 * 18 17 16 37 37 H 1.08994 * 110.03051 * 240.71540 * 18 17 16 38 38 H 1.09000 * 110.48928 * 142.28640 * 19 18 17 39 39 H 1.08999 * 110.48469 * 264.93049 * 19 18 17 40 40 H 1.08997 * 110.97492 * 24.11437 * 20 14 12 41 41 H 1.09005 * 110.96654 * 147.87130 * 20 14 12 42 42 H 1.08996 * 110.30269 * 215.68210 * 21 20 14 43 43 H 1.09001 * 110.21124 * 93.76164 * 21 20 14 44 44 H 0.96988 * 124.35143 * 196.94254 * 22 21 20 45 45 H 1.07997 * 126.58153 * 359.96138 * 26 25 9 46 46 H 1.07998 * 126.57690 * 180.02562 * 27 26 25 47 47 H 1.07994 * 125.79150 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 1 3.8750 -2.2215 0.0010 11 8 3.9959 -0.5086 1.1849 12 6 4.1995 -1.2563 2.2809 13 8 3.9797 -2.4441 2.2512 14 6 4.7021 -0.6145 3.5484 15 6 4.8558 -1.6619 4.6530 16 6 3.5351 -2.4459 4.8537 17 6 3.9803 -3.7818 5.4839 18 6 5.4517 -3.9878 5.0836 19 6 5.8495 -2.7698 4.2248 20 6 3.7450 0.5129 4.0002 21 6 4.4032 1.7576 3.3597 22 7 5.8220 1.4156 3.2038 23 6 6.0179 0.0892 3.2997 24 8 7.0932 -0.4631 3.2008 25 6 4.0134 -0.4843 -1.2311 26 6 4.3649 -1.0714 -2.3892 27 6 4.7720 -0.0388 -3.2649 28 6 4.6445 1.1176 -2.5898 29 8 4.1801 0.8421 -1.3600 30 1 -0.4851 0.8400 -0.0004 31 1 5.1746 -1.1970 5.5860 32 1 3.0456 -2.6204 3.8955 33 1 2.8710 -1.9077 5.5299 34 1 3.3704 -4.5984 5.0976 35 1 3.8922 -3.7304 6.5691 36 1 6.0776 -4.0365 5.9746 37 1 5.5558 -4.9045 4.5031 38 1 6.8743 -2.4682 4.4418 39 1 5.7339 -2.9962 3.1649 40 1 2.7412 0.3537 3.6065 41 1 3.7273 0.5974 5.0868 42 1 4.2934 2.6224 4.0139 43 1 3.9554 1.9618 2.3871 44 1 6.5276 2.0634 3.0514 45 1 4.3409 -2.1287 -2.6080 46 1 5.1181 -0.1560 -4.2812 47 1 4.8730 2.1011 -2.9729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345977722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:18 Heat of formation + Delta-G solvation = -87.262483 kcal Electronic energy + Delta-G solvation = -33596.356118 eV Core-core repulsion = 29325.599508 eV Total energy + Delta-G solvation = -4270.756611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.00204 -41.26923 -38.97200 -37.58745 -36.23919 -35.56705 -33.08215 -32.39816 -32.18008 -30.52973 -28.74566 -28.24835 -27.04969 -26.24141 -23.49607 -22.41056 -21.70193 -21.16827 -20.73356 -19.87499 -19.75817 -19.15990 -17.74075 -17.39685 -16.99585 -16.81151 -15.93600 -15.71784 -15.44806 -15.15750 -14.82821 -14.61860 -14.27335 -14.04090 -13.66752 -13.51728 -13.30633 -13.08560 -12.87935 -12.67180 -12.45459 -12.32908 -12.18897 -11.93349 -11.71360 -11.38592 -11.31546 -11.09881 -10.88854 -10.82411 -10.69736 -10.59532 -10.42690 -10.26665 -9.97653 -9.70308 -9.55044 -9.34335 -9.23261 -9.13584 -8.86856 -8.70411 -7.73920 -6.42784 -4.56741 2.34882 2.52290 2.85303 3.03663 3.16386 3.33073 3.36115 3.43877 3.65788 4.04629 4.26662 4.34256 4.44830 4.65094 4.92676 4.93087 5.02037 5.08417 5.16581 5.30792 5.50325 5.56848 5.60023 5.61376 5.70369 5.78432 5.91383 5.92414 5.97361 6.00833 6.03713 6.09497 6.18816 6.23111 6.27219 6.38224 6.41394 6.53403 6.63662 6.74928 6.77551 6.78201 6.83785 7.03341 7.05611 7.16025 7.41667 7.79740 8.06687 8.30243 8.50797 8.64714 9.15900 10.63778 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.005023 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.325709 B = 5572.979559 C = 5738.698865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.088 3.912 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.212 1.212 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.251 3.749 10 H 0.090 0.910 11 O -0.352 6.352 12 C 0.483 3.517 13 O -0.488 6.488 14 C -0.084 4.084 15 C -0.059 4.059 16 C -0.131 4.131 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.120 4.120 21 C 0.089 3.911 22 N -0.722 5.722 23 C 0.540 3.460 24 O -0.521 6.521 25 C 0.033 3.967 26 C -0.228 4.228 27 C -0.204 4.204 28 C -0.076 4.076 29 O -0.165 6.165 30 H 0.271 0.729 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.411 0.589 45 H 0.143 0.857 46 H 0.140 0.860 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.402 3.530 7.539 11.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.121 4.121 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.138 1.138 7 C -0.568 4.568 8 H 0.109 0.891 9 C 0.199 3.801 10 H 0.108 0.892 11 O -0.269 6.269 12 C 0.324 3.676 13 O -0.376 6.376 14 C -0.089 4.089 15 C -0.078 4.078 16 C -0.169 4.169 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.035 4.035 22 N -0.377 5.377 23 C 0.325 3.675 24 O -0.396 6.396 25 C -0.017 4.017 26 C -0.247 4.247 27 C -0.223 4.223 28 C -0.142 4.142 29 O -0.062 6.062 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.250 0.750 45 H 0.161 0.839 46 H 0.158 0.842 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 8.554 3.079 7.655 11.885 hybrid contribution 0.350 1.199 -0.627 1.398 sum 8.904 4.278 7.028 12.124 Atomic orbital electron populations 1.69926 1.06778 1.28173 1.45039 1.25187 0.94883 1.00290 0.91701 0.86738 0.80697 0.81721 0.79342 1.20266 1.22645 1.13809 1.21094 0.86735 0.95812 1.53193 0.89081 1.19294 0.94734 0.90984 0.75135 0.89192 1.86956 1.75809 1.43267 1.20868 1.22179 0.74759 0.85677 0.84940 1.90514 1.47352 1.16201 1.83541 1.21321 0.95652 0.97584 0.94365 1.21854 0.97897 0.93669 0.94410 1.22762 0.95990 0.94925 1.03178 1.22011 0.96256 0.97871 0.99224 1.22063 0.95949 0.98674 0.98964 1.22519 0.98013 0.93368 1.01636 1.22759 0.99862 0.91426 1.01720 1.22440 0.80532 0.97804 1.02728 1.46031 1.10071 1.08039 1.73537 1.20164 0.89308 0.82781 0.75289 1.90723 1.28564 1.69800 1.50517 1.23036 0.99232 0.80491 0.98941 1.21232 1.09468 1.00303 0.93676 1.21627 1.07442 0.92466 1.00785 1.23770 1.05265 0.99956 0.85250 1.84454 1.64323 1.25168 1.32281 0.91936 0.89988 0.88026 0.92417 0.91942 0.92741 0.92737 0.92121 0.91522 0.89868 0.87888 0.88890 0.90054 0.89226 0.75046 0.83933 0.84206 0.79531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.70 13.96 55.43 0.77 -23.93 16 2 C 0.09 2.38 5.45 -17.82 -0.10 2.28 16 3 Si 0.88 20.50 22.27 -169.99 -3.79 16.71 16 4 H -0.27 -6.54 6.01 56.52 0.34 -6.20 16 5 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.21 -4.57 3.06 56.52 0.17 -4.40 16 7 C -0.53 -14.32 9.51 -34.44 -0.33 -14.65 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 9 C 0.25 5.91 2.55 -29.04 -0.07 5.84 16 10 H 0.09 2.11 7.15 -51.93 -0.37 1.74 16 11 O -0.35 -7.74 6.30 -42.01 -0.26 -8.00 16 12 C 0.48 9.81 5.72 36.01 0.21 10.01 16 13 O -0.49 -10.58 10.78 -18.75 -0.20 -10.78 16 14 C -0.08 -1.38 0.36 -155.67 -0.06 -1.44 16 15 C -0.06 -0.89 2.14 -88.64 -0.19 -1.08 16 16 C -0.13 -1.94 5.60 -25.07 -0.14 -2.09 16 17 C -0.12 -1.54 6.80 -25.61 -0.17 -1.71 16 18 C -0.12 -1.62 6.80 -25.61 -0.17 -1.79 16 19 C -0.12 -1.89 4.86 -25.09 -0.12 -2.01 16 20 C -0.12 -1.62 5.86 -24.99 -0.15 -1.77 16 21 C 0.09 1.14 7.57 -3.01 -0.02 1.11 16 22 N -0.72 -9.84 6.24 -59.09 -0.37 -10.21 16 23 C 0.54 9.08 7.07 -10.86 -0.08 9.00 16 24 O -0.52 -10.09 15.96 5.56 0.09 -10.01 16 25 C 0.03 0.75 5.34 -35.63 -0.19 0.56 16 26 C -0.23 -4.60 10.81 -39.70 -0.43 -5.03 16 27 C -0.20 -3.62 10.91 -39.70 -0.43 -4.06 16 28 C -0.08 -1.39 11.72 29.41 0.34 -1.04 16 29 O -0.16 -3.59 4.86 2.19 0.01 -3.58 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.08 1.07 8.13 -51.93 -0.42 0.64 16 32 H 0.10 1.84 5.18 -51.93 -0.27 1.57 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.08 7.21 -51.93 -0.37 0.71 16 39 H 0.08 1.57 5.70 -51.93 -0.30 1.27 16 40 H 0.10 1.53 7.89 -51.93 -0.41 1.12 16 41 H 0.09 0.96 7.90 -51.93 -0.41 0.55 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.09 1.36 5.44 -51.93 -0.28 1.08 16 44 H 0.41 4.63 8.96 -40.82 -0.37 4.26 16 45 H 0.14 2.60 8.06 -52.49 -0.42 2.18 16 46 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 47 H 0.19 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 358.58 15.07 5.40 5.40 Total: -1.00 -32.05 358.58 -7.30 -39.36 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -6.86 Total: 12.89 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -2.10 Total: -7.85 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.40 Total: -34.14 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.37 Total: -32.37 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -3.79 Total: 16.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.05 -7.30 -39.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.906 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds