Wall clock time and date at job start Wed Apr 1 2020 05:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99681 * 2 1 4 4 H 1.48500 * 109.46915 * 269.99920 * 3 2 1 5 5 H 1.48505 * 109.47173 * 29.99916 * 3 2 1 6 6 H 1.48503 * 109.47038 * 149.99832 * 3 2 1 7 7 C 1.37875 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99860 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00087 * 179.97438 * 7 2 1 10 10 H 1.08998 * 109.47251 * 179.97438 * 9 7 2 11 11 O 1.45207 * 109.46842 * 60.00008 * 9 7 2 12 12 C 1.34229 * 116.99890 * 89.99885 * 11 9 7 13 13 O 1.20831 * 119.99830 * 359.97438 * 12 11 9 14 14 C 1.50700 * 120.00266 * 179.97438 * 12 11 9 15 15 C 1.52997 * 110.43550 * 180.02562 * 14 12 11 16 16 C 1.54891 * 110.75763 * 305.97052 * 15 14 12 17 17 C 1.54267 * 104.19324 * 156.25900 * 16 15 14 18 18 C 1.53876 * 106.59870 * 336.39035 * 17 16 15 19 19 C 1.54261 * 106.59990 * 0.02562 * 18 17 16 20 20 C 1.54631 * 110.47941 * 57.45960 * 14 12 11 21 21 C 1.54684 * 101.67155 * 265.90393 * 20 14 12 22 22 N 1.46771 * 105.53643 * 334.74655 * 21 20 14 23 23 C 1.34421 * 111.29749 * 16.91973 * 22 21 20 24 24 O 1.21280 * 124.94189 * 179.55838 * 23 22 21 25 25 C 1.50695 * 109.47402 * 300.00298 * 9 7 2 26 26 C 1.34517 * 125.78606 * 265.00271 * 25 9 7 27 27 C 1.41381 * 106.83798 * 179.97438 * 26 25 9 28 28 C 1.34511 * 106.84409 * 359.97438 * 27 26 25 29 29 O 1.34301 * 125.79120 * 84.68760 * 25 9 7 30 30 H 0.97005 * 120.00649 * 0.02562 * 1 2 3 31 31 H 1.09005 * 110.81411 * 182.63979 * 15 14 12 32 32 H 1.09004 * 110.48613 * 37.58272 * 16 15 14 33 33 H 1.08994 * 110.48745 * 274.93690 * 16 15 14 34 34 H 1.08995 * 110.03032 * 217.10762 * 17 16 15 35 35 H 1.08998 * 110.03405 * 95.67701 * 17 16 15 36 36 H 1.08998 * 110.02768 * 119.28860 * 18 17 16 37 37 H 1.08994 * 110.03051 * 240.71540 * 18 17 16 38 38 H 1.09000 * 110.48928 * 142.28640 * 19 18 17 39 39 H 1.08999 * 110.48469 * 264.93049 * 19 18 17 40 40 H 1.08997 * 110.97492 * 24.11437 * 20 14 12 41 41 H 1.09005 * 110.96654 * 147.87130 * 20 14 12 42 42 H 1.08996 * 110.30269 * 215.68210 * 21 20 14 43 43 H 1.09001 * 110.21124 * 93.76164 * 21 20 14 44 44 H 0.96988 * 124.35143 * 196.94254 * 22 21 20 45 45 H 1.07997 * 126.58153 * 359.96138 * 26 25 9 46 46 H 1.07998 * 126.57690 * 180.02562 * 27 26 25 47 47 H 1.07994 * 125.79150 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 1 3.8750 -2.2215 0.0010 11 8 3.9959 -0.5086 1.1849 12 6 4.1995 -1.2563 2.2809 13 8 3.9797 -2.4441 2.2512 14 6 4.7021 -0.6145 3.5484 15 6 4.8558 -1.6619 4.6530 16 6 3.5351 -2.4459 4.8537 17 6 3.9803 -3.7818 5.4839 18 6 5.4517 -3.9878 5.0836 19 6 5.8495 -2.7698 4.2248 20 6 3.7450 0.5129 4.0002 21 6 4.4032 1.7576 3.3597 22 7 5.8220 1.4156 3.2038 23 6 6.0179 0.0892 3.2997 24 8 7.0932 -0.4631 3.2008 25 6 4.0134 -0.4843 -1.2311 26 6 4.3649 -1.0714 -2.3892 27 6 4.7720 -0.0388 -3.2649 28 6 4.6445 1.1176 -2.5898 29 8 4.1801 0.8421 -1.3600 30 1 -0.4851 0.8400 -0.0004 31 1 5.1746 -1.1970 5.5860 32 1 3.0456 -2.6204 3.8955 33 1 2.8710 -1.9077 5.5299 34 1 3.3704 -4.5984 5.0976 35 1 3.8922 -3.7304 6.5691 36 1 6.0776 -4.0365 5.9746 37 1 5.5558 -4.9045 4.5031 38 1 6.8743 -2.4682 4.4418 39 1 5.7339 -2.9962 3.1649 40 1 2.7412 0.3537 3.6065 41 1 3.7273 0.5974 5.0868 42 1 4.2934 2.6224 4.0139 43 1 3.9554 1.9618 2.3871 44 1 6.5276 2.0634 3.0514 45 1 4.3409 -2.1287 -2.6080 46 1 5.1181 -0.1560 -4.2812 47 1 4.8730 2.1011 -2.9729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345977722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:17 Heat of formation + Delta-G solvation = -109.200750 kcal Electronic energy + Delta-G solvation = -33597.307433 eV Core-core repulsion = 29325.599508 eV Total energy + Delta-G solvation = -4271.707925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.57532 -42.62771 -40.49699 -38.91426 -37.51883 -37.18954 -35.05523 -33.99031 -33.42494 -32.26071 -29.88463 -29.41089 -28.74933 -27.53991 -25.23927 -23.84066 -23.03279 -22.65668 -21.98609 -21.49119 -20.90851 -20.65468 -19.37871 -18.84492 -18.63692 -18.18222 -17.60186 -17.25913 -16.87569 -16.61482 -16.13659 -16.08294 -15.91739 -15.33081 -15.11051 -14.92173 -14.72246 -14.48158 -14.19576 -14.11458 -14.00285 -13.74190 -13.44126 -13.35830 -13.30093 -13.03952 -12.70217 -12.59317 -12.32737 -12.15174 -12.01039 -11.92554 -11.85943 -11.64231 -11.50235 -11.28977 -11.01415 -10.98323 -10.89239 -10.59379 -10.56508 -10.04032 -9.34087 -8.50621 -6.71368 0.76441 1.09280 1.21835 1.35369 1.47732 1.55165 1.73942 2.01143 2.29716 2.34311 2.44338 2.91989 3.12143 3.27621 3.44580 3.70248 3.81821 3.89755 4.01701 4.12113 4.16545 4.23089 4.28615 4.41803 4.47836 4.60112 4.63827 4.69924 4.73996 4.77456 4.84919 4.89281 4.92824 5.00611 5.03617 5.07835 5.09485 5.15127 5.23764 5.26480 5.41006 5.43524 5.59826 5.65231 5.68534 5.79888 5.90938 6.00850 6.23091 6.38008 6.87168 7.07187 7.13498 8.59925 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.005023 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.325709 B = 5572.979559 C = 5738.698865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.044 3.956 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.043 0.957 9 C 0.263 3.737 10 H 0.074 0.926 11 O -0.352 6.352 12 C 0.470 3.530 13 O -0.510 6.510 14 C -0.084 4.084 15 C -0.056 4.056 16 C -0.131 4.131 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.119 4.119 21 C 0.088 3.912 22 N -0.705 5.705 23 C 0.535 3.465 24 O -0.553 6.553 25 C -0.009 4.009 26 C -0.227 4.227 27 C -0.205 4.205 28 C -0.072 4.072 29 O -0.182 6.182 30 H 0.275 0.725 31 H 0.116 0.884 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.043 0.957 40 H 0.084 0.916 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.067 0.933 44 H 0.424 0.576 45 H 0.152 0.848 46 H 0.180 0.820 47 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.276 6.443 8.889 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.160 4.160 3 Si 0.774 3.226 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.118 1.118 7 C -0.583 4.583 8 H 0.062 0.938 9 C 0.210 3.790 10 H 0.092 0.908 11 O -0.269 6.269 12 C 0.313 3.687 13 O -0.399 6.399 14 C -0.089 4.089 15 C -0.075 4.075 16 C -0.169 4.169 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.036 4.036 22 N -0.360 5.360 23 C 0.319 3.681 24 O -0.432 6.432 25 C -0.058 4.058 26 C -0.247 4.247 27 C -0.223 4.223 28 C -0.137 4.137 29 O -0.080 6.080 30 H 0.084 0.916 31 H 0.134 0.866 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.103 0.897 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.085 0.915 44 H 0.265 0.735 45 H 0.169 0.831 46 H 0.197 0.803 47 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 10.428 6.002 9.011 15.032 hybrid contribution -0.179 0.165 -1.139 1.165 sum 10.250 6.168 7.871 14.320 Atomic orbital electron populations 1.70035 1.08454 1.29227 1.47180 1.25963 0.95470 1.03656 0.90890 0.85812 0.80276 0.77154 0.79346 1.20574 1.21923 1.11774 1.21057 0.88815 0.94256 1.54140 0.93845 1.18802 0.92688 0.91111 0.76377 0.90817 1.86885 1.76005 1.43022 1.20993 1.23140 0.74197 0.85717 0.85661 1.90520 1.48100 1.17386 1.83880 1.21437 0.96376 0.98839 0.92232 1.21968 0.97370 0.93089 0.95049 1.22687 0.96204 0.96273 1.01705 1.22023 0.95557 0.96638 1.00875 1.22066 0.96738 0.97169 0.99384 1.22433 0.98298 0.95200 0.99732 1.22917 0.98103 0.90289 1.04382 1.22584 0.79306 0.99097 1.02607 1.45984 1.11033 1.07114 1.71846 1.20226 0.88734 0.83763 0.75367 1.90707 1.29602 1.70653 1.52189 1.22732 1.02697 0.81450 0.98960 1.21665 1.07851 1.01638 0.93519 1.22055 1.06874 0.91222 1.02170 1.24795 1.03087 1.02186 0.83657 1.84352 1.65048 1.24407 1.34218 0.91610 0.86597 0.92250 0.89953 0.92915 0.89703 0.90181 0.92960 0.91916 0.93813 0.89686 0.84548 0.84998 0.91519 0.73466 0.83069 0.80293 0.74955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.52 13.96 21.45 0.30 -54.22 16 2 C 0.04 2.47 5.45 84.66 0.46 2.93 16 3 Si 0.94 42.94 22.27 68.60 1.53 44.47 16 4 H -0.28 -12.61 6.01 99.48 0.60 -12.01 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.19 -8.02 3.06 99.48 0.30 -7.72 16 7 C -0.55 -31.42 9.51 25.60 0.24 -31.18 16 8 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 9 C 0.26 13.09 2.55 29.10 0.07 13.16 16 10 H 0.07 3.77 7.15 -2.39 -0.02 3.75 16 11 O -0.35 -15.92 6.30 -48.77 -0.31 -16.23 16 12 C 0.47 19.80 5.72 71.24 0.41 20.21 16 13 O -0.51 -23.78 10.78 21.95 0.24 -23.54 16 14 C -0.08 -2.68 0.36 -52.93 -0.02 -2.70 16 15 C -0.06 -1.60 2.14 -9.51 -0.02 -1.62 16 16 C -0.13 -3.79 5.60 31.67 0.18 -3.61 16 17 C -0.11 -2.87 6.80 31.32 0.21 -2.65 16 18 C -0.12 -3.07 6.80 31.32 0.21 -2.85 16 19 C -0.12 -3.83 4.86 31.66 0.15 -3.68 16 20 C -0.12 -2.92 5.86 31.72 0.19 -2.73 16 21 C 0.09 1.92 7.57 86.90 0.66 2.58 16 22 N -0.70 -17.13 6.24 -459.44 -2.87 -20.00 16 23 C 0.53 17.19 7.07 87.90 0.62 17.81 16 24 O -0.55 -21.17 15.96 -3.03 -0.05 -21.21 16 25 C -0.01 -0.39 5.34 24.83 0.13 -0.26 16 26 C -0.23 -9.11 10.81 22.19 0.24 -8.87 16 27 C -0.20 -6.67 10.91 22.19 0.24 -6.43 16 28 C -0.07 -2.38 11.72 66.97 0.79 -1.59 16 29 O -0.18 -7.64 4.86 0.85 0.00 -7.63 16 30 H 0.27 15.19 8.31 -92.70 -0.77 14.41 16 31 H 0.12 2.56 8.13 -2.38 -0.02 2.54 16 32 H 0.06 2.25 5.18 -2.38 -0.01 2.24 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 2.03 7.21 -2.39 -0.02 2.01 16 39 H 0.04 1.74 5.70 -2.39 -0.01 1.73 16 40 H 0.08 2.44 7.89 -2.39 -0.02 2.42 16 41 H 0.14 2.15 7.90 -2.38 -0.02 2.14 16 42 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.07 1.83 5.44 -2.39 -0.01 1.82 16 44 H 0.42 8.15 8.96 -92.72 -0.83 7.32 16 45 H 0.15 5.58 8.06 -2.91 -0.02 5.56 16 46 H 0.18 4.32 8.06 -2.91 -0.02 4.30 16 47 H 0.23 5.26 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -76.85 358.58 3.28 -73.56 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -0.33 Total: 36.29 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 4.77 Total: -11.48 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -2.57 Total: -74.22 kcal Atomic # 8 Polarization: -68.50 SS G_CDS: -0.11 Total: -68.62 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.53 Total: 44.47 kcal Total: -76.85 3.28 -73.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.637 kcal (2) G-P(sol) polarization free energy of solvation -76.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds