Wall clock time and date at job start Wed Apr 1 2020 04:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34226 * 117.00464 * 2 1 4 4 O 1.20829 * 119.99992 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00053 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.46883 * 180.02562 * 5 3 2 7 7 C 1.36918 * 119.99804 * 263.72241 * 6 5 3 8 8 H 1.07997 * 119.99763 * 353.44096 * 7 6 5 9 9 C 1.39019 * 119.99923 * 173.43323 * 7 6 5 10 10 N 1.31379 * 119.99914 * 92.62435 * 9 7 6 11 11 Si 1.86797 * 120.00105 * 272.62489 * 9 7 6 12 12 H 1.48505 * 109.47080 * 5.02043 * 11 9 7 13 13 H 1.48502 * 109.47317 * 125.01866 * 11 9 7 14 14 H 1.48495 * 109.47586 * 245.02179 * 11 9 7 15 15 C 1.34772 * 120.00302 * 83.72697 * 6 5 3 16 16 O 1.21616 * 120.00096 * 183.61623 * 15 6 5 17 17 C 1.47610 * 120.00192 * 3.62021 * 15 6 5 18 18 C 1.41544 * 126.52557 * 174.57140 * 17 15 6 19 19 C 1.35347 * 105.50247 * 180.24501 * 18 17 15 20 20 N 1.35052 * 107.23904 * 359.63667 * 19 18 17 21 21 C 1.46504 * 124.87941 * 180.14517 * 20 19 18 22 22 C 1.52998 * 109.47244 * 123.55938 * 21 20 19 23 23 N 1.46500 * 109.47450 * 185.06498 * 22 21 20 24 24 C 1.34948 * 126.03871 * 124.71239 * 23 22 21 25 25 C 1.35316 * 107.74206 * 179.84314 * 24 23 22 26 26 C 1.39865 * 107.92572 * 0.42213 * 25 24 23 27 27 N 1.30842 * 108.20189 * 359.73957 * 26 25 24 28 28 N 1.28469 * 110.24388 * 0.38009 * 20 19 18 29 29 H 1.09002 * 109.46968 * 299.99908 * 1 2 3 30 30 H 1.09003 * 109.46854 * 59.99156 * 1 2 3 31 31 H 1.08996 * 109.47601 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47134 * 60.00102 * 5 3 2 33 33 H 1.09004 * 109.46884 * 299.99679 * 5 3 2 34 34 H 0.97006 * 120.00078 * 184.91084 * 10 9 7 35 35 H 1.08000 * 127.25303 * 359.97438 * 18 17 15 36 36 H 1.07994 * 126.38202 * 179.77331 * 19 18 17 37 37 H 1.09004 * 109.47342 * 243.56022 * 21 20 19 38 38 H 1.09004 * 109.46835 * 3.55773 * 21 20 19 39 39 H 1.09004 * 109.46961 * 305.06623 * 22 21 20 40 40 H 1.09004 * 109.47230 * 65.06389 * 22 21 20 41 41 H 1.08001 * 126.12373 * 0.02562 * 24 23 22 42 42 H 1.08006 * 126.03778 * 180.16064 * 25 24 23 43 43 H 1.07996 * 125.90524 * 179.71073 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6795 0.0002 7 6 4.2998 3.3000 -1.1782 8 1 4.3473 2.7287 -2.0935 9 6 4.5612 4.6652 -1.1965 10 7 5.7945 5.0996 -1.0690 11 14 3.1590 5.8821 -1.4022 12 1 1.8659 5.1518 -1.4026 13 1 3.1781 6.8539 -0.2795 14 1 3.3179 6.6079 -2.6879 15 6 4.0511 3.3612 1.1607 16 8 4.3320 4.5444 1.1551 17 6 3.7861 2.6716 2.4387 18 6 3.9239 3.2201 3.7362 19 6 3.5791 2.2261 4.5876 20 7 3.2479 1.1532 3.8372 21 6 2.8104 -0.1393 4.3704 22 6 1.4437 -0.4971 3.7830 23 7 0.9514 -1.7281 4.4062 24 6 -0.2320 -1.8804 5.0368 25 6 -0.3084 -3.1613 5.4663 26 6 0.8725 -3.8116 5.0937 27 7 1.6285 -2.9534 4.4582 28 7 3.3763 1.4274 2.5887 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.9557 0.7807 -0.8908 33 1 3.9564 0.7804 0.8892 34 1 5.9697 6.0519 -1.0101 35 1 4.2419 4.2198 3.9931 36 1 3.5684 2.2813 5.6661 37 1 3.5345 -0.9078 4.1000 38 1 2.7344 -0.0775 5.4560 39 1 0.7416 0.3140 3.9762 40 1 1.5385 -0.6471 2.7075 41 1 -0.9844 -1.1175 5.1716 42 1 -1.1337 -3.6025 6.0057 43 1 1.1182 -4.8436 5.2961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001360964522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:49 Heat of formation + Delta-G solvation = 101.868629 kcal Electronic energy + Delta-G solvation = -31449.434491 eV Core-core repulsion = 27115.631629 eV Total energy + Delta-G solvation = -4333.802863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.17368 -41.34370 -39.84480 -38.02221 -35.82674 -35.25859 -33.99833 -32.75933 -32.00730 -30.35595 -30.25273 -28.58063 -28.35554 -26.44783 -25.40553 -23.93622 -21.97736 -21.38204 -20.97833 -20.91015 -20.38326 -19.36083 -17.74319 -17.35551 -17.00782 -16.70976 -16.16806 -16.04616 -15.84201 -15.28681 -15.06455 -14.63691 -14.54463 -14.06817 -13.96158 -13.79208 -13.39979 -13.11166 -13.05122 -12.97686 -12.87176 -12.64016 -12.39763 -12.18130 -11.94846 -11.77999 -11.67392 -11.59457 -10.90784 -10.87212 -10.52615 -10.36982 -10.04476 -9.95022 -9.81383 -9.73099 -8.93346 -8.85861 -8.79855 -8.51518 -8.32194 -7.62832 -6.86176 -3.34609 1.60120 1.99432 2.21150 2.59350 2.73676 2.87154 2.97126 3.21493 3.40183 3.66099 3.78352 4.11397 4.22392 4.26494 4.55525 4.60388 4.64624 4.80589 4.86639 4.95039 5.07625 5.12468 5.22359 5.29702 5.34816 5.41311 5.44453 5.48683 5.52355 5.73045 5.75956 5.83750 5.91760 6.16727 6.20558 6.34139 6.36970 6.67081 6.88689 6.98167 7.16088 7.34300 7.42745 7.92480 8.43002 8.45089 8.71370 9.17609 9.45260 10.09831 10.23190 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.003529 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.385383 B = 7932.838990 C = 8896.838233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.449 3.551 4 O -0.490 6.490 5 C 0.114 3.886 6 N -0.366 5.366 7 C -0.501 4.501 8 H 0.106 0.894 9 C 0.237 3.763 10 N -0.688 5.688 11 Si 0.811 3.189 12 H -0.260 1.260 13 H -0.273 1.273 14 H -0.293 1.293 15 C 0.463 3.537 16 O -0.566 6.566 17 C 0.048 3.952 18 C -0.190 4.190 19 C -0.022 4.022 20 N -0.308 5.308 21 C 0.123 3.877 22 C 0.122 3.878 23 N -0.370 5.370 24 C 0.056 3.944 25 C -0.275 4.275 26 C 0.045 3.955 27 N -0.291 5.291 28 N -0.308 5.308 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.281 0.719 35 H 0.155 0.845 36 H 0.171 0.829 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.173 0.827 42 H 0.147 0.853 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.335 -15.294 12.852 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.285 6.285 3 C 0.290 3.710 4 O -0.374 6.374 5 C -0.014 4.014 6 N -0.081 5.081 7 C -0.616 4.616 8 H 0.123 0.877 9 C 0.001 3.999 10 N -0.307 5.307 11 Si 0.631 3.369 12 H -0.184 1.184 13 H -0.198 1.198 14 H -0.220 1.220 15 C 0.257 3.743 16 O -0.452 6.452 17 C -0.113 4.113 18 C -0.219 4.219 19 C -0.164 4.164 20 N -0.094 5.094 21 C 0.001 3.999 22 C 0.000 4.000 23 N -0.153 5.153 24 C -0.090 4.090 25 C -0.305 4.305 26 C -0.142 4.142 27 N -0.113 5.113 28 N -0.142 5.142 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.147 0.853 34 H 0.093 0.907 35 H 0.173 0.827 36 H 0.189 0.811 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.190 0.810 42 H 0.165 0.835 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.347 -15.120 11.626 20.819 hybrid contribution -1.809 1.267 1.004 2.426 sum -10.156 -13.852 12.630 21.320 Atomic orbital electron populations 1.23066 0.78280 1.02419 1.01985 1.86539 1.21950 1.34868 1.85157 1.24950 0.93089 0.80969 0.72006 1.90677 1.66592 1.36206 1.43963 1.21294 0.86562 0.87471 1.06078 1.43095 1.51679 1.07187 1.06183 1.18140 1.64067 0.92877 0.86528 0.87680 1.24756 0.93597 0.97553 0.84021 1.70696 1.24182 1.17888 1.17908 0.88007 0.90153 0.82086 0.76613 1.18372 1.19818 1.22018 1.16187 0.90583 0.86974 0.80537 1.90535 1.57078 1.14308 1.83305 1.22642 1.02232 0.89866 0.96521 1.21706 1.08391 1.00622 0.91158 1.22660 1.07479 0.87907 0.98401 1.45190 1.49739 1.10645 1.03857 1.21879 0.96212 0.83007 0.98810 1.21975 0.95844 0.82432 0.99757 1.48600 1.13804 1.09138 1.43732 1.22623 0.90172 0.99193 0.97049 1.21519 1.01889 0.94159 1.12928 1.23933 0.93007 0.99784 0.97445 1.77425 1.20803 0.90228 1.22809 1.73606 1.23433 1.18017 0.99141 0.92936 0.92293 0.89045 0.87418 0.85259 0.90710 0.82716 0.81147 0.87951 0.88203 0.88202 0.87509 0.81020 0.83508 0.79979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.20 10.56 -39.25 -0.41 -6.62 16 3 C 0.45 9.30 7.09 36.01 0.26 9.56 16 4 O -0.49 -12.07 16.03 -18.75 -0.30 -12.37 16 5 C 0.11 2.39 5.58 -5.19 -0.03 2.36 16 6 N -0.37 -9.57 2.18 -117.25 -0.26 -9.83 16 7 C -0.50 -14.08 9.48 -14.99 -0.14 -14.22 16 8 H 0.11 2.86 7.99 -52.49 -0.42 2.44 16 9 C 0.24 6.75 3.01 -17.46 -0.05 6.69 16 10 N -0.69 -19.35 13.53 55.50 0.75 -18.60 16 11 Si 0.81 22.00 28.28 -169.99 -4.81 17.19 16 12 H -0.26 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.27 -7.67 7.11 56.52 0.40 -7.27 16 14 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 15 C 0.46 12.50 7.36 -12.44 -0.09 12.41 16 16 O -0.57 -17.01 12.97 5.26 0.07 -16.94 16 17 C 0.05 1.06 6.81 -82.77 -0.56 0.50 16 18 C -0.19 -3.59 10.81 -39.35 -0.43 -4.02 16 19 C -0.02 -0.32 11.40 -17.17 -0.20 -0.51 16 20 N -0.31 -4.52 3.39 -61.33 -0.21 -4.73 16 21 C 0.12 1.33 6.58 -4.04 -0.03 1.30 16 22 C 0.12 1.29 6.63 -4.04 -0.03 1.26 16 23 N -0.37 -3.79 3.68 -61.36 -0.23 -4.01 16 24 C 0.06 0.46 11.45 -17.22 -0.20 0.26 16 25 C -0.28 -2.18 10.80 -40.01 -0.43 -2.62 16 26 C 0.04 0.40 12.03 -17.36 -0.21 0.19 16 27 N -0.29 -3.33 12.42 30.62 0.38 -2.95 16 28 N -0.31 -5.75 7.58 33.41 0.25 -5.50 16 29 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.11 2.03 7.94 -51.93 -0.41 1.61 16 33 H 0.13 2.54 5.34 -51.93 -0.28 2.27 16 34 H 0.28 7.32 8.32 -40.82 -0.34 6.98 16 35 H 0.16 2.85 8.06 -52.49 -0.42 2.42 16 36 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.10 0.84 8.04 -51.93 -0.42 0.42 16 39 H 0.10 0.96 8.07 -51.93 -0.42 0.55 16 40 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.15 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.18 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -37.57 378.20 -5.44 -43.01 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.31 Total: 0.89 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: -1.07 Total: 14.74 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.69 Total: -45.61 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.65 Total: -35.93 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.81 Total: 17.19 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.57 -5.44 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360964522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.880 kcal (2) G-P(sol) polarization free energy of solvation -37.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds